Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000426

Physical Location & Seq

Genomic Coordinates Forward (+)

67930873 .. 67931781

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG371500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTGATGGGGCTTTCATTGCATCTGTTGCTTCTATTTGTTCACTCGGTTATATGTTCTTCAGGGCAAACATTCCCCTATGTGACTTCAGATGTCCAAGAAGTCTCCGGTAGGTTCTTCGACTACATTGTGGTTGGAGGAGGCACTGCCGGCTGCCCCCTAGCTGCAACCTTGTCTGAGAAATTCTCAGTGCTGTTGGTGGAACGAGGTGGCTCGCCTTATGGAGACCCCTTCATCTTAGAGTCGAAGTACTACGGATTCTCATTGCTCCGAACGGATGAATATACATCAGCTGCACAAAGATTTGTCCCGACAGATGGTGTCAGCAATTTCAGAGGAAGAGTGCTAGGAGGATCAGCTGCTATCGATGGTGGGTTTTACGGCAGAGCAAGTAAGGATTTTGTCAAAAAGGTTGGTTGGGATAATGAGGGAGTAAGGGATGCTTATGAATGGGTGGAATCTCGAATCATCTCTAAACCTGATCATTTGACTCCATGGTCGCATGCTGCTGCGTTTAGCTTTCTTGAAGCTGGAATTTCCCCTTATAATGGTTTCAGTTTGGAGCATATTCAGGGAACAAAGATTGTTGGGAGTTCGTTCGATAACCAGGGAAGAAGACACTTACCAGCTGATCTTCTACAGGCAGGAAATCCAAGCAAGATCACGGTTCTCTTGAATGCAACTGTAGACAAAGTTATCTTTCAAAGAACTCGTACCAGAGATGAGAAGATAGCTCGAGGTATAAGGTTGATCAAGAGTGATGGCAGCTCAAACCAGACTTATGAAGCTTACCTCAACCAGCCAGACAACTCAGGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

273

Amino Acids

29.82

Weight (kDa)

6.6

Isoelectric Point (pI)

23.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14185 AT1G14190 AT1G14190
fragaria_vesca	FvH4_4g31240
malus_domestica	MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica	Prupe.1G275800_v2.0.a1
pyrus_communis	pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis	RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata	RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora	Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii	Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa	Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha	Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana	Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AasI	GACNNNNNNGTC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	687
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	182, 534
AcuI	CTGAAG	2 cut(s)	45, 72
AfaI	GTAC	2 cut(s)	251, 715
AfiI	CCNNNNNNNGG	2 cut(s)	317, 548
AgsI	TTSAA	3 cut(s)	527, 676, 704
AjnI	CCWGG	1 cut(s)	606
AluBI	AGCT	9 cut(s)	164, 293, 359, 519, 530, 629, 734, 768, 788
AluI	AGCT	9 cut(s)	164, 293, 359, 519, 530, 629, 734, 768, 788
Alw26I	GTCTC	2 cut(s)	109, 219
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	735
ApeKI	GCWGC	7 cut(s)	153, 164, 293, 359, 506, 509, 765
ApoI	RAATTY	2 cut(s)	182, 534
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	7 cut(s)	140, 151, 280, 346, 493, 496, 777
BccI	CCATC	3 cut(s)	311, 362, 755
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	608
BclI	TGATCA	2 cut(s)	481, 750
BcoDI	GTCTC	2 cut(s)	109, 219
BfaI	CTAG	2 cut(s)	161, 347
BfmI	CTRYAG	2 cut(s)	638, 684
BisI	GCNGC	7 cut(s)	154, 165, 294, 360, 507, 510, 766
BlsI	GCNGC	7 cut(s)	155, 166, 295, 361, 508, 511, 767
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	735
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	31, 430
BpiI	GAAGAC	1 cut(s)	622
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bsa29I	ATCGAT	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	494, 607
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 548
Bse118I	RCCGGY	1 cut(s)	149
Bse3DI	GCAATG	2 cut(s)	17, 263
BseBI	CCWGG	1 cut(s)	608
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	494, 607
BseGI	GGATG	2 cut(s)	283, 445
BseLI	CCNNNNNNNGG	2 cut(s)	317, 548
BseMI	GCAATG	2 cut(s)	17, 263
BseMII	CTCAG	2 cut(s)	168, 201
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	7 cut(s)	140, 151, 280, 346, 493, 496, 777
BsgI	GTGCAG	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	2 cut(s)	108, 150
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	317, 548
BsmAI	GTCTC	2 cut(s)	109, 219
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	682
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	735
Bsp143I	GATC	5 cut(s)	353, 481, 631, 660, 750
Bsp19I	CCATGG	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	169, 200
BspDI	ATCGAT	1 cut(s)	366
BspPI	GGATC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	17, 263
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	494, 607
BssMI	GATC	5 cut(s)	353, 481, 631, 660, 750
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	667, 685
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	151, 215, 504
BstDEI	CTNAG	4 cut(s)	177, 187, 238, 811
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	283, 445
BstKTI	GATC	5 cut(s)	356, 484, 634, 663, 753
BstMAI	GTCTC	2 cut(s)	109, 219
BstMBI	GATC	5 cut(s)	353, 481, 631, 660, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 28, 150
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	2 cut(s)	638, 684
BstV1I	GCAGC	7 cut(s)	140, 151, 280, 346, 493, 496, 777
BstV2I	GAAGAC	1 cut(s)	622
Bsu15I	ATCGAT	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	283, 445
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 195
Cac8I	GCNNGC	3 cut(s)	151, 215, 504
Cfr10I	RCCGGY	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	250, 714
CviAII	CATG	2 cut(s)	495, 503
CviQI	GTAC	2 cut(s)	250, 714
DdeI	CTNAG	4 cut(s)	177, 187, 238, 811
DpnI	GATC	5 cut(s)	355, 483, 633, 662, 752
DpnII	GATC	5 cut(s)	353, 481, 631, 660, 750
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	45, 72
Eco88I	CYCGRG	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	2 cut(s)	498, 506
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	494, 502
FbaI	TGATCA	2 cut(s)	481, 750
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	7 cut(s)	154, 165, 294, 360, 507, 510, 766
FokI	GGATG	2 cut(s)	290, 452
Fsp4HI	GCNGC	7 cut(s)	154, 165, 294, 360, 507, 510, 766
FspBI	CTAG	2 cut(s)	161, 347
GluI	GCNGC	7 cut(s)	154, 165, 294, 360, 507, 510, 766
HapII	CCGG	2 cut(s)	108, 150
Hin1II	CATG	2 cut(s)	498, 506
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	5 cut(s)	242, 258, 458, 465, 490
HpaII	CCGG	2 cut(s)	108, 150
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	43, 688
Hpy188I	TCNGA	4 cut(s)	91, 178, 272, 335
Hpy188III	TCNNGA	5 cut(s)	310, 462, 524, 673, 754
Hpy8I	GTNNAC	2 cut(s)	43, 688
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	667, 685
HpyCH4V	TGCA	4 cut(s)	22, 167, 296, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 28, 150
HpyF3I	CTNAG	4 cut(s)	177, 187, 238, 811
Hsp92II	CATG	2 cut(s)	498, 506
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	481, 750
Kzo9I	GATC	5 cut(s)	353, 481, 631, 660, 750
LmnI	GCTCC	2 cut(s)	273, 562
Lsp1109I	GCAGC	7 cut(s)	140, 151, 280, 346, 493, 496, 777
LweI	GCATC	2 cut(s)	31, 430
MaeI	CTAG	2 cut(s)	161, 347
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	355, 483, 633, 662, 752
MboI	GATC	5 cut(s)	353, 481, 631, 660, 750
MboII	GAAGA	7 cut(s)	51, 109, 351, 624, 626, 627, 739
MluCI	AATT	3 cut(s)	182, 328, 534
MlyI	GAGTC	2 cut(s)	251, 484
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	8 cut(s)	131, 134, 200, 329, 344, 421, 731, 803
MroNI	GCCGGC	1 cut(s)	149
MspA1I	CMGCKG	3 cut(s)	293, 359, 629
MspI	CCGG	2 cut(s)	108, 150
MspR9I	CCNGG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	19, 28, 150
NaeI	GCCGGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	5 cut(s)	353, 481, 631, 660, 750
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	498, 506
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	735
PctI	GAATGC	1 cut(s)	682
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	3 cut(s)	258, 458, 465
PkrI	GCNGC	7 cut(s)	155, 166, 295, 361, 508, 511, 767
PleI	GAGTC	2 cut(s)	250, 484
PpsI	GAGTC	2 cut(s)	250, 484
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspXI	VCTCGAGB	1 cut(s)	735
PvuII	CAGCTG	3 cut(s)	293, 359, 629
RsaI	GTAC	2 cut(s)	251, 715
RsaNI	GTAC	2 cut(s)	250, 714
SatI	GCNGC	7 cut(s)	154, 165, 294, 360, 507, 510, 766
Sau3AI	GATC	5 cut(s)	353, 481, 631, 660, 750
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	2 cut(s)	251, 484
ScrFI	CCNGG	1 cut(s)	608
SfaNI	GCATC	2 cut(s)	31, 430
SfcI	CTRYAG	2 cut(s)	638, 684
Sfr274I	CTCGAG	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	182, 328, 534
SspMI	CTAG	2 cut(s)	161, 347
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	667, 685
TaqI	TCGA	6 cut(s)	120, 245, 366, 463, 600, 736
TasI	AATT	3 cut(s)	182, 328, 534
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	258, 458, 465
TscAI	CASTG	2 cut(s)	151, 195
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	7 cut(s)	153, 164, 293, 359, 506, 509, 765
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	6 cut(s)	6, 223, 294, 462, 798, 807
TspGWI	ACGGA	2 cut(s)	270, 290
TspRI	CASTG	2 cut(s)	151, 195
XapI	RAATTY	2 cut(s)	182, 534
XceI	RCATGY	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	735
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	2 cut(s)	161, 347
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.