pycom13g06360

GMC oxidoreductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
4133938 .. 4134501
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06360.1

Sequence Viewer

Length: 507 bp
ATGAGTTCAGATGTCAATGAAGTTTCGGGCAAGTCCTTCAACTACGTTGTCATTGGAGGAGGTACTGCAGGCTGTCCCCTAGCTGCAACCCTGTCGGAGAAATTCTCAGTGCTCTTGGGATTCTCATTGCTCCAAACTTATCAATATACATCAGTTGCACAAAGCTTAGTGTCCAATGACGGTGTGAGCAATCTCAGAGGCAGAGTTCGAGGAGGAGCATTAGCTATAAATGGCGGGTTTTACAGCAGAGCAAGTGAGGATTTTGTCGAAAAGGTTGCATGGGATAAGGAGATGGTAACAAATGCTTATCAATGGGTCGAATCTAGAGTCATCTTTAAACCCGAACTGACCCCGTGGCAGTATGCTGCTGAGTTTAGCTTTCTTGAGGCAGGGGTTTTCCCTAACAATGGTTTTAGTTTGGATCGATCTTCGACATCGAGGGAACAAAGGTCGGTGCAAGTGTGTTTGATGAACAGGGAAGAAGACACACCTCAGCTGATCTTCTAG

Protein Analysis

169

Amino Acids

18.52

Weight (kDa)

4.89

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14185 AT1G14190 AT1G14190
fragaria_vesca FvH4_4g31240
malus_domestica MD13G1071000.v1.1 MD13G1071100.v1.1 MD16G1071700.v1.1 MD16G1071800.v1.1
prunus_persica Prupe.1G275800_v2.0.a1
pyrus_communis pycom13g06360 pycom13g06370 pycom16g06200
rosa_chinensis RchiOBHm_Chr1g0339361 RchiOBHm_Chr1g0339551 RchiOBHm_Chr4g0439631 RchiOBHm_Chr4g0439641 RchiOBHm_Chr4g0439661 RchiOBHm_Chr4g0439681 RchiOBHm_Chr5g0043441 RchiOBHm_Chr5g0076991
rosa_laevigata RLG00000006247 RLG00000006249 RLG00000006250 RLG00000006251 RLG00000006252 RLG00000029228 RLG00000029236 RLG00000034187 RLG00000036640
rosa_multiflora Rmu_co8382505.1_g000001 Rmu_co8503591.1_g000001 Rmu_sc0000613.1_g000004 Rmu_sc0000729.1_g000011 Rmu_sc0002549.1_g000002 Rmu_sc0002549.1_g000008 Rmu_sc0004655.1_g000021 Rmu_sc0005220.1_g000001 Rmu_sc0007322.1_g000009 Rmu_sc0008285.1_g000002 Rmu_sc0009495.1_g000002 Rmu_ssc0000067.1_g000054
rosa_roxburghii Rroxscaffold_1G00005160 Rroxscaffold_1G00037450 Rroxscaffold_4G00313450 Rroxscaffold_4G00313520 Rroxscaffold_5G00380580 Rroxscaffold_5G00380590
rosa_rugosa Rorug01G0141000.1 Rorug01G0142300.1 Rorug01G0142400.1 Rorug04G0320400 Rorug04G0320500 Rorug04G0320500 Rorug04G0320800 Rorug04G0320900 Rorug05G0205800 Rorug05G0449900
rosa_samantha Rh1AG158500 Rh1AG159100 Rh1BG126000 Rh1CG108300 Rh1CG147800 Rh1CG148300 Rh1DG116900 Rh4AG371400 Rh4AG371500 Rh4AG371600 Rh4AG371700 Rh4BG383200 Rh4BG383300 Rh4BG383400 Rh4BG383700 Rh4CG397800 Rh4CG398000 Rh4CG398100 Rh4CG398400 Rh4DG378000 Rh4DG378100 Rh4DG378200 Rh5AG291600 Rh5AG454300 Rh5AG504700 Rh5BG298300 Rh5BG526400 Rh5CG327800 Rh5CG550200 Rh5DG307600 Rh5DG538500
rosa_wichuraiana Rw1G013210 Rw1G013570 Rw4G031660 Rw4G031680 Rw4G031690 Rw4G031710 Rw5G027060 Rw5G047170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 429
AcsI RAATTY 1 cut(s) 101
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 5 cut(s) 83, 165, 224, 378, 496
AluI AGCT 5 cut(s) 83, 165, 224, 378, 496
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 83, 365
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 70, 352
BccI CCATC 1 cut(s) 286
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 257, 291
BfaI CTAG 3 cut(s) 80, 324, 505
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 84, 366
BlsI GCNGC 2 cut(s) 85, 367
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 4 cut(s) 120, 208, 360, 506
BseRI GAGGAG 3 cut(s) 72, 225, 228
BseXI GCAGC 2 cut(s) 70, 352
BshVI ATCGAT 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 421, 425, 498
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 4 cut(s) 119, 207, 361, 505
BspDI ATCGAT 1 cut(s) 424
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 421, 425, 498
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 5 cut(s) 106, 166, 194, 369, 492
BstDSI CCRYGG 1 cut(s) 353
BstKTI GATC 3 cut(s) 424, 428, 501
BstMBI GATC 3 cut(s) 421, 425, 498
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 70, 352
BstV2I GAAGAC 1 cut(s) 489
Bsu15I ATCGAT 1 cut(s) 424
BsuTUI ATCGAT 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 424
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 279
CviJI RGCY 6 cut(s) 72, 83, 165, 224, 378, 496
CviKI_1 RGCY 6 cut(s) 72, 83, 165, 224, 378, 496
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 5 cut(s) 106, 166, 194, 369, 492
DpnI GATC 3 cut(s) 423, 427, 500
DpnII GATC 3 cut(s) 421, 425, 498
DraI TTTAAA 1 cut(s) 337
FaeI CATG 1 cut(s) 282
FaiI YATR 4 cut(s) 147, 227, 280, 363
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 84, 366
Fsp4HI GCNGC 2 cut(s) 84, 366
FspBI CTAG 3 cut(s) 80, 324, 505
GluI GCNGC 2 cut(s) 84, 366
Hin1II CATG 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 3 cut(s) 120, 320, 327
Hpy188I TCNGA 3 cut(s) 10, 97, 197
Hpy188III TCNNGA 2 cut(s) 324, 383
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 5 cut(s) 68, 86, 158, 278, 457
HpyF3I CTNAG 5 cut(s) 106, 166, 194, 369, 492
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 3 cut(s) 421, 425, 498
LmnI GCTCC 2 cut(s) 135, 215
LpnPI CCDG 4 cut(s) 54, 104, 375, 460
Lsp1109I GCAGC 2 cut(s) 70, 352
MaeI CTAG 3 cut(s) 80, 324, 505
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 423, 427, 500
MboI GATC 3 cut(s) 421, 425, 498
MboII GAAGA 4 cut(s) 420, 491, 493, 494
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 101
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 9 cut(s) 50, 53, 191, 203, 206, 250, 379, 432, 501
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 496
NdeII GATC 3 cut(s) 421, 425, 498
NlaIII CATG 1 cut(s) 282
PfeI GAWTC 2 cut(s) 120, 320
PkrI GCNGC 2 cut(s) 85, 367
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 84, 366
Sau3AI GATC 3 cut(s) 421, 425, 498
SchI GAGTC 1 cut(s) 336
SduI GDGCHC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 101
SsiI CCGC 1 cut(s) 234
SspMI CTAG 3 cut(s) 80, 324, 505
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 48
TaqI TCGA 6 cut(s) 208, 267, 318, 424, 431, 437
TasI AATT 1 cut(s) 101
TfiI GAWTC 2 cut(s) 120, 320
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 114
TseI GCWGC 2 cut(s) 83, 365
TspDTI ATGAA 2 cut(s) 33, 485
TspRI CASTG 1 cut(s) 114
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 323
XspI CTAG 3 cut(s) 80, 324, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.