Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

12923525 .. 12929912

Gene Structure 6388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1164000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTGCATCTTCTCTTGGAAATTCTTCAGGCTCCTGATCCCTCTACCCTGGAAAATTTTCTTGGGAGGATCCCTATGGTGTTCAATGTTGTCATAGTGTCGCCACACGGCTACTTTGGCCAAGCTAACGTCTTGGGTTTGCCTGACACTGGAGGGCAGGTTGTTTATATACTGGATCAAGTGCGTGCCCTGGAGAGTGAGATGCTTCTTAGAATACAAAATCAAGGATTGGATGTTATTCCAGAAATTCTGATTGTTACCCGACTGATACCGGATGCAAAAGGGACAACATGCAACCGAAGATTAGAAGGAGTCAGTGGTACAGAATACACACATATCTTACGGGTACCTTTCAGGACTGAGAATGAGATACTGCGGAAATGGATTTCAAGGTTTGATGTGTGGCCTTACTTGGAGACCTTTGCAGAGGATGCCTCGAATGAAATTGCCACTGAGTTGCAGCGTGTTCCAGATCTAATCATTGGAAACTATAGTGATGGAAATCTTGTTGCAACTCTGTTGTCGTATAAACTGGGAATCACACAGAGGGCTCAAACGAGCCCTCTGGCCAGCCCTCGATTAGAAATGGCCTTATATGGTGCTGAGCAGAACGACGAGCATATTGGGCTGTTGAGTGATAGATCAAAGCCTATTGTCTTTTCCATGGCAAGACTTGACAGAGTGAAAATTTTAACTGGACTTGTTGAGTGCTATGCTAAGAGCGCCAAGCTAAGAGAAATGATAAACCTTGTTGTGGTTGGTGGTTACATGGATGTCAAGAACTCTAGGGATAGAGAAGAAATTGCAGAGATTGAAAAGATGCATGACCTCATTAAGAAATACAACATGAGTGGTCAGTTCCAATGGATAGCAGCACAAATGAACCGTGCTCGTAATGGTGAGCTCTTCTCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

306

Amino Acids

34.49

Weight (kDa)

5.67

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	16 - 187	2.1e-88	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	4 cut(s)	32, 64, 77, 183
AcoI	YGGCCR	2 cut(s)	118, 567
AcsI	RAATTY	4 cut(s)	21, 55, 246, 687
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	322, 348
AfiI	CCNNNNNNNGG	2 cut(s)	149, 754
AgsI	TTSAA	3 cut(s)	85, 390, 815
AjnI	CCWGG	2 cut(s)	48, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	3 cut(s)	125, 730, 904
AluI	AGCT	3 cut(s)	125, 730, 904
Alw21I	GWGCWC	2 cut(s)	892, 906
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	4 cut(s)	32, 64, 77, 183
Ama87I	CYCGRG	1 cut(s)	910
AoxI	GGCC	4 cut(s)	118, 404, 567, 588
ApeKI	GCWGC	2 cut(s)	460, 872
ApoI	RAATTY	4 cut(s)	21, 55, 246, 687
Asp700I	GAANNNNTTC	2 cut(s)	24, 57
Asp718I	GGTACC	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	725
AsuHPI	GGTGA	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	910
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	2 cut(s)	120, 569
BamHI	GGATCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	3 cut(s)	553, 563, 906
Bbv12I	GWGCWC	2 cut(s)	892, 906
BbvI	GCAGC	2 cut(s)	472, 884
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	50, 191
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	2 cut(s)	461, 873
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	2 cut(s)	462, 874
Bme1390I	CCNGG	2 cut(s)	50, 191
BmeT110I	CYCGRG	1 cut(s)	910
BmiI	GGNNCC	3 cut(s)	33, 71, 348
BmrFI	CCNGG	2 cut(s)	50, 191
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	5 cut(s)	16, 192, 265, 421, 810
BmuI	ACTGGG	1 cut(s)	542
BplI	GAGNNNNNCTC	3 cut(s)	419, 451, 893
BpmI	CTGGAG	2 cut(s)	171, 212
Bpu1102I	GCTNAGC	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	48, 189, 663
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 754
Bse1I	ACTGG	4 cut(s)	154, 177, 537, 700
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	50, 191
BseDI	CCNNGG	3 cut(s)	48, 189, 663
BseGI	GGATG	4 cut(s)	238, 280, 436, 778
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	149, 754
BseMII	CTCAG	3 cut(s)	351, 444, 594
BseNI	ACTGG	4 cut(s)	154, 177, 537, 700
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	472, 884
BshFI	GGCC	4 cut(s)	120, 406, 569, 590
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	892, 906
BsiHKCI	CYCGRG	1 cut(s)	910
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	149, 754
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	120, 406, 569, 590
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	910
Bsp1286I	GDGCHC	5 cut(s)	190, 553, 563, 892, 906
Bsp143I	GATC	5 cut(s)	37, 69, 175, 472, 641
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	4 cut(s)	120, 406, 569, 590
BspCNI	CTCAG	3 cut(s)	352, 445, 595
BspLI	GGNNCC	3 cut(s)	33, 71, 348
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	4 cut(s)	32, 64, 77, 183
BspQI	GCTCTTC	1 cut(s)	911
BspT107I	GGYRCC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	4 cut(s)	154, 177, 537, 700
BssECI	CCNNGG	3 cut(s)	48, 189, 663
BssMI	GATC	5 cut(s)	37, 69, 175, 472, 641
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	50, 191
Bst4CI	ACNGT	1 cut(s)	887
Bst6I	CTCTTC	1 cut(s)	911
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	186, 571
BstDEI	CTNAG	6 cut(s)	209, 360, 453, 603, 717, 731
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	4 cut(s)	238, 280, 436, 778
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	5 cut(s)	40, 72, 178, 475, 644
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	5 cut(s)	37, 69, 175, 472, 641
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 431, 625, 722
BstNI	CCWGG	2 cut(s)	50, 191
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	48, 189
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	472, 884
BstX2I	RGATCY	2 cut(s)	69, 472
BstYI	RGATCY	2 cut(s)	69, 472
BsuRI	GGCC	4 cut(s)	120, 406, 569, 590
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	4 cut(s)	238, 280, 436, 778
BtsIMutI	CAGTG	3 cut(s)	147, 322, 450
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	186, 571
CfoI	GCGC	1 cut(s)	725
Csp6I	GTAC	2 cut(s)	321, 347
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	5 cut(s)	291, 664, 769, 824, 847
CviQI	GTAC	2 cut(s)	321, 347
DdeI	CTNAG	6 cut(s)	209, 360, 453, 603, 717, 731
DpnI	GATC	5 cut(s)	39, 71, 177, 474, 643
DpnII	GATC	5 cut(s)	37, 69, 175, 472, 641
EaeI	YGGCCR	2 cut(s)	118, 567
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	553, 563, 906
Eco31I	GGTCTC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	910
EcoICRI	GAGCTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	48, 189
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	3 cut(s)	553, 563, 906
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	5 cut(s)	294, 667, 772, 827, 850
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	290, 663, 768, 823, 846
Fnu4HI	GCNGC	2 cut(s)	461, 873
FokI	GGATG	4 cut(s)	245, 287, 443, 785
FriOI	GRGCYC	3 cut(s)	553, 563, 906
Fsp4HI	GCNGC	2 cut(s)	461, 873
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	2 cut(s)	461, 873
GsuI	CTGGAG	2 cut(s)	171, 212
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	4 cut(s)	120, 406, 569, 590
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	294, 667, 772, 827, 850
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	2 cut(s)	312, 537
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	911
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	7 cut(s)	35, 242, 355, 470, 778, 910, 912
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	887
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	7, 278, 294, 425, 460, 512, 806, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 431, 625, 722
HpyF3I	CTNAG	6 cut(s)	209, 360, 453, 603, 717, 731
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	294, 667, 772, 827, 850
HspAI	GCGC	1 cut(s)	723
KpnI	GGTACC	1 cut(s)	350
Kzo9I	GATC	5 cut(s)	37, 69, 175, 472, 641
LguI	GCTCTTC	1 cut(s)	911
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	472, 884
LweI	GCATC	5 cut(s)	16, 192, 265, 421, 810
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	256, 764
MalI	GATC	5 cut(s)	39, 71, 177, 474, 643
MboI	GATC	5 cut(s)	37, 69, 175, 472, 641
MboII	GAAGA	4 cut(s)	17, 312, 809, 898
MflI	RGATCY	2 cut(s)	69, 472
MhlI	GDGCHC	5 cut(s)	190, 553, 563, 892, 906
MlsI	TGGCCA	2 cut(s)	120, 569
MluCI	AATT	6 cut(s)	21, 55, 246, 444, 687, 801
MluNI	TGGCCA	2 cut(s)	120, 569
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	52, 60, 146, 421, 445, 540, 573, 585, 839
Mox20I	TGGCCA	2 cut(s)	120, 569
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	2 cut(s)	24, 57
MscI	TGGCCA	2 cut(s)	120, 569
MseI	TTAA	2 cut(s)	692, 834
Msp20I	TGGCCA	2 cut(s)	120, 569
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	50, 191
MvaI	CCWGG	2 cut(s)	50, 191
MwoI	GCNNNNNNNGC	4 cut(s)	117, 431, 625, 722
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	5 cut(s)	37, 69, 175, 472, 641
NlaIII	CATG	5 cut(s)	294, 667, 772, 827, 850
NlaIV	GGNNCC	3 cut(s)	33, 71, 348
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	910
PciSI	GCTCTTC	1 cut(s)	911
PdmI	GAANNNNTTC	2 cut(s)	24, 57
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	462, 874
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	906
Psp6I	CCWGG	2 cut(s)	48, 189
PspGI	CCWGG	2 cut(s)	48, 189
PspN4I	GGNNCC	3 cut(s)	33, 71, 348
PsuI	RGATCY	2 cut(s)	69, 472
RsaI	GTAC	2 cut(s)	322, 348
RsaNI	GTAC	2 cut(s)	321, 347
SacI	GAGCTC	1 cut(s)	906
SapI	GCTCTTC	1 cut(s)	911
SaqAI	TTAA	2 cut(s)	692, 834
SatI	GCNGC	2 cut(s)	461, 873
Sau3AI	GATC	5 cut(s)	37, 69, 175, 472, 641
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	50, 191
SduI	GDGCHC	5 cut(s)	190, 553, 563, 892, 906
SfaNI	GCATC	5 cut(s)	16, 192, 265, 421, 810
SfcI	CTRYAG	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	910
SlaI	CTCGAG	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse9I	AATT	6 cut(s)	21, 55, 246, 444, 687, 801
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	1 cut(s)	906
StyD4I	CCNGG	2 cut(s)	48, 189
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	887
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	437, 577, 911
TasI	AATT	6 cut(s)	21, 55, 246, 444, 687, 801
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	692, 834
Tru9I	TTAA	2 cut(s)	692, 834
TscAI	CASTG	3 cut(s)	154, 322, 457
TseI	GCWGC	2 cut(s)	460, 872
TspDTI	ATGAA	2 cut(s)	456, 896
TspRI	CASTG	3 cut(s)	154, 322, 457
XapI	RAATTY	4 cut(s)	21, 55, 246, 687
XceI	RCATGY	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	910
XmnI	GAANNNNTTC	2 cut(s)	24, 57
XspI	CTAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.