Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Reverse (-)

47168653 .. 47173061

Gene Structure 4409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCGGGAGAGGATTCAGGACACGCTCGCCGCACACCGGAACGAACTTGTTTCTCTTCTCTCCAGGTATGTTGCTCGAGGAAATGGGATACTACAGCCTCATCAGATAATCAACGAGCTCGAAAAGGTGATCGAAGAGGATGAGAAGATGAAGAAGCTAAAGGATAGCCCCTTCAGCAAAGTTCTACAGTCTGCACAGGAAGCAATTGTTCTGCCTCCTTTTGTGGCTTTTGCTCTTCGTCCAAGACCTGGTGTGTGGGAATATGTCCGTGTCAATGTATATGAACTCAGTGTGGATCATCTGAGTGTTGCAGAGTATCTCCTGTTCAAGGAAGAACTTCTGGATGGAGAGTGCAATGACAATTATGTGCTTGAACTTGATTTGGAGCCATTTAATGCAACATTCCCTCGGCCAACCCGTTCATCATCCATTGGGAATGGGGTTCAATTCCTTAACCGTCACTTATCTTCAATTATGTTCCGTAACAAAGAAAGTTTGGAGCCTCTTCTTGATTTCCTTCGTACGCATAAACATGATGGCCATCTTCGATCTGCTTTAGCCAAGGCAGAGGAATATCTTTCTAAGTTCCCCCCAATGACACCATATTCTGAGTTTGAGTTTGAGTATGCAATTCATCTATTTTCAAATAATTTGATGTCCGGTAACTTAAAGAGGCGCTTGATTTATTTAGACATTACCATTATCGTCTTCACTCTAAGTGTAGGTTACAAGGAATGGGATTTGAGAGAGGGTGGGGTGACACCGCAGACGGGTGTCGAGATGGTGCATCTACTCTTGGAAATTCTTCAGGCTCCAGATCCTTCTACACTTGAAACATTTCTTGGCAGGATTCCTATGGTGTTCAATGTTGTCATTGTGTCTCCACACGGCTACTTTGGCCAAGCAAATGTATTGGGTTTGCCGGACACCGGTGGGCAGAGCACCAATCTAAGAGAAATGGTAAATCTTGTTGTGGTTGGTGGTTACATGGACGCCAAGAACTCTAGGGATAGAGAAGAAATGGAAGAGATTGAAAAGATGCATGACCTCATTAAGAAGTACGATTTGAATGGCCGTTTCGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

362

Amino Acids

41.43

Weight (kDa)

5.39

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_N	PF24861	1 - 111	2.9e-48	Sucrose synthase N-terminal
SUS_EPBD	PF24862	146 - 208	2.1e-13	Sucrose synthase EPBD domain
GT-B_Sucrose_synth	PF00862	276 - 317	5.9e-16	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	3 cut(s)	4, 30, 764
AclWI	GGATC	2 cut(s)	303, 812
AcoI	YGGCCR	4 cut(s)	410, 538, 898, 1072
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	2 cut(s)	157, 791
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	2 cut(s)	523, 1061
AfiI	CCNNNNNNNGG	5 cut(s)	36, 248, 328, 770, 929
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	9 cut(s)	328, 374, 446, 471, 645, 833, 865, 1034, 1069
AjnI	CCWGG	2 cut(s)	62, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AluBI	AGCT	2 cut(s)	118, 157
AluI	AGCT	2 cut(s)	118, 157
Alw21I	GWGCWC	2 cut(s)	120, 944
Alw26I	GTCTC	1 cut(s)	885
AlwI	GGATC	2 cut(s)	303, 812
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	4 cut(s)	410, 538, 898, 1072
ApoI	RAATTY	1 cut(s)	801
AsiGI	ACCGGT	1 cut(s)	929
Asp700I	GAANNNNTTC	3 cut(s)	336, 804, 837
AspLEI	GCGC	1 cut(s)	678
AsuHPI	GGTGA	2 cut(s)	139, 769
AvaI	CYCGRG	1 cut(s)	75
BalI	TGGCCA	2 cut(s)	540, 900
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	2 cut(s)	120, 944
BccI	CCATC	5 cut(s)	338, 530, 549, 775, 1076
BceAI	ACGGC	2 cut(s)	904, 1059
BciT130I	CCWGG	2 cut(s)	64, 249
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	1 cut(s)	1005
BfmI	CTRYAG	2 cut(s)	92, 185
BfoI	RGCGCY	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	64, 249
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	387, 501, 813
BmrFI	CCNGG	2 cut(s)	64, 249
BmsI	GCATC	2 cut(s)	796, 1029
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	2 cut(s)	46, 798
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	407, 561
BsaWI	WCCGGW	3 cut(s)	36, 659, 929
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 248, 328, 770, 929
Bse118I	RCCGGY	1 cut(s)	929
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	64, 249
BseDI	CCNNGG	2 cut(s)	407, 561
BseGI	GGATG	3 cut(s)	145, 349, 425
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	5 cut(s)	36, 248, 328, 770, 929
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	293, 301, 600
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	412, 540, 900, 1074
BshTI	ACCGGT	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	120, 944
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	37, 660, 923, 930
BsiWI	CGTACG	1 cut(s)	521
BslI	CCNNNNNNNGG	5 cut(s)	36, 248, 328, 770, 929
BsmAI	GTCTC	1 cut(s)	885
BsnI	GGCC	4 cut(s)	412, 540, 900, 1074
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	120, 944
Bsp143I	GATC	4 cut(s)	129, 295, 548, 817
BspACI	CCGC	3 cut(s)	4, 30, 764
BspANI	GGCC	4 cut(s)	412, 540, 900, 1074
BspCNI	CTCAG	3 cut(s)	294, 300, 601
BspLI	GGNNCC	3 cut(s)	387, 501, 813
BspPI	GGATC	2 cut(s)	303, 812
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	929
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	407, 561
BssMI	GATC	4 cut(s)	129, 295, 548, 817
BssNI	GRCGYC	1 cut(s)	993
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	64, 249
Bst4CI	ACNGT	2 cut(s)	189, 458
Bst6I	CTCTTC	5 cut(s)	60, 129, 240, 510, 1020
BstACI	GRCGYC	1 cut(s)	993
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	6 cut(s)	287, 302, 582, 609, 716, 950
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	145, 349, 425
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	4 cut(s)	132, 298, 551, 820
BstMAI	GTCTC	1 cut(s)	885
BstMBI	GATC	4 cut(s)	129, 295, 548, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 200, 897
BstNI	CCWGG	2 cut(s)	64, 249
BstPAI	GACNNNNGTC	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	62, 247
BstSFI	CTRYAG	2 cut(s)	92, 185
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	412, 540, 900, 1074
BtsCI	GGATG	3 cut(s)	145, 349, 425
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	678
Cfr10I	RCCGGY	1 cut(s)	929
CseI	GACGC	1 cut(s)	1001
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	522, 1060
CspAI	ACCGGT	1 cut(s)	929
CviAII	CATG	3 cut(s)	533, 988, 1043
CviQI	GTAC	2 cut(s)	522, 1060
DdeI	CTNAG	6 cut(s)	287, 302, 582, 609, 716, 950
DpnI	GATC	4 cut(s)	131, 297, 550, 819
DpnII	GATC	4 cut(s)	129, 295, 548, 817
EaeI	YGGCCR	4 cut(s)	410, 538, 898, 1072
Eam1104I	CTCTTC	5 cut(s)	60, 129, 240, 510, 1020
EarI	CTCTTC	5 cut(s)	60, 129, 240, 510, 1020
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	157, 791
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	62, 247
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	1044
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	536, 991, 1046
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	3 cut(s)	532, 987, 1042
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	3 cut(s)	152, 356, 412
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	1005
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	46, 798
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	4 cut(s)	412, 540, 900, 1074
HapII	CCGG	4 cut(s)	37, 660, 923, 930
HgaI	GACGC	1 cut(s)	1001
HhaI	GCGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	3 cut(s)	536, 991, 1046
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	13, 850
HpaII	CCGG	4 cut(s)	37, 660, 923, 930
HphI	GGTGA	2 cut(s)	139, 769
Hpy188I	TCNGA	3 cut(s)	105, 303, 610
Hpy188III	TCNNGA	5 cut(s)	17, 341, 509, 778, 815
HpyAV	CCTTC	3 cut(s)	181, 527, 831
HpyCH4III	ACNGT	2 cut(s)	189, 458
HpyCH4V	TGCA	7 cut(s)	194, 311, 354, 398, 629, 787, 1042
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 200, 897
HpyF3I	CTNAG	6 cut(s)	287, 302, 582, 609, 716, 950
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	3 cut(s)	536, 991, 1046
HspAI	GCGC	1 cut(s)	676
Kzo9I	GATC	4 cut(s)	129, 295, 548, 817
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	3 cut(s)	385, 499, 817
LweI	GCATC	2 cut(s)	796, 1029
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	1 cut(s)	1005
MaeIII	GTNAC	6 cut(s)	458, 482, 662, 725, 757, 983
MalI	GATC	4 cut(s)	131, 297, 550, 819
MboI	GATC	4 cut(s)	129, 295, 548, 817
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	2 cut(s)	120, 944
MlsI	TGGCCA	2 cut(s)	540, 900
MluCI	AATT	7 cut(s)	204, 361, 446, 471, 630, 649, 801
MluNI	TGGCCA	2 cut(s)	540, 900
Mox20I	TGGCCA	2 cut(s)	540, 900
Mph1103I	ATGCAT	1 cut(s)	1044
MroXI	GAANNNNTTC	3 cut(s)	336, 804, 837
MscI	TGGCCA	2 cut(s)	540, 900
MseI	TTAA	4 cut(s)	393, 453, 668, 1053
MslI	CAYNNNNRTG	2 cut(s)	303, 531
Msp20I	TGGCCA	2 cut(s)	540, 900
MspI	CCGG	4 cut(s)	37, 660, 923, 930
MspR9I	CCNGG	2 cut(s)	64, 249
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	64, 249
MwoI	GCNNNNNNNGC	3 cut(s)	174, 200, 897
NdeII	GATC	4 cut(s)	129, 295, 548, 817
NlaIII	CATG	3 cut(s)	536, 991, 1046
NlaIV	GGNNCC	3 cut(s)	387, 501, 813
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	458, 757
NsiI	ATGCAT	1 cut(s)	1044
PaeR7I	CTCGAG	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PdmI	GAANNNNTTC	3 cut(s)	336, 804, 837
PfeI	GAWTC	2 cut(s)	13, 850
Pfl23II	CGTACG	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	929
PkrI	GCNGC	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	62, 247
PspGI	CCWGG	2 cut(s)	62, 247
PspLI	CGTACG	1 cut(s)	521
PspN4I	GGNNCC	3 cut(s)	387, 501, 813
PspXI	VCTCGAGB	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	308, 340
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	2 cut(s)	523, 1061
RsaNI	GTAC	2 cut(s)	522, 1060
RseI	CAYNNNNRTG	2 cut(s)	303, 531
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	393, 453, 668, 1053
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	129, 295, 548, 817
ScrFI	CCNGG	2 cut(s)	64, 249
SduI	GDGCHC	2 cut(s)	120, 944
SetI	ASST	7 cut(s)	68, 120, 129, 159, 250, 727, 1050
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	796, 1029
SfcI	CTRYAG	2 cut(s)	92, 185
Sfr274I	CTCGAG	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	303, 531
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	7 cut(s)	204, 361, 446, 471, 630, 649, 801
SsiI	CCGC	3 cut(s)	4, 30, 764
SspMI	CTAG	1 cut(s)	1005
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	62, 247
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	189, 458
TaqI	TCGA	6 cut(s)	76, 120, 132, 547, 777, 1080
TasI	AATT	7 cut(s)	204, 361, 446, 471, 630, 649, 801
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	13, 850
Tru1I	TTAA	4 cut(s)	393, 453, 668, 1053
Tru9I	TTAA	4 cut(s)	393, 453, 668, 1053
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	458, 757
Tsp45I	GTSAC	2 cut(s)	458, 757
TspDTI	ATGAA	4 cut(s)	164, 297, 411, 623
TspGWI	ACGGA	2 cut(s)	257, 470
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	801
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	3 cut(s)	336, 804, 837
XspI	CTAG	1 cut(s)	1005
Zsp2I	ATGCAT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.