Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000893.1

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

39100 .. 39685

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000893.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgcagtgcaacatcgctcatgcattggagaagacaatgtacccagattctgatatattttggaaaagctatgaggacaagtaccatttctcaagtcaaatcaccgctgatctcattgcaatgaacaatgcagattccataatcaccagtacataccaagagattgcaggaagccagaacaatgttggacagtatcagagccacacagctttcactcttcctgggctgtatccagttgttcacggggttgatgtttttgatcctaagtttaatattgtgtctccaggagcagatatgtgcatattggcatcgaaacccatcttgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

109

Amino Acids

12.11

Weight (kDa)

4.79

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	254
AfaI	GTAC	3 cut(s)	41, 83, 151
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	220, 283
AluBI	AGCT	2 cut(s)	69, 209
AluI	AGCT	2 cut(s)	69, 209
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	94, 136
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	222, 285
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	222, 285
BmrFI	CCNGG	2 cut(s)	222, 285
BmsI	GCATC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	147, 233
Bse3DI	GCAATG	2 cut(s)	114, 126
BseBI	CCWGG	2 cut(s)	222, 285
BseDI	CCNNGG	1 cut(s)	221
BseMI	GCAATG	2 cut(s)	114, 126
BseNI	ACTGG	2 cut(s)	147, 233
BsmAI	GTCTC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	109, 259
BspACI	CCGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	114, 126
BsrI	ACTGG	2 cut(s)	147, 233
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	109, 259
Bst2UI	CCWGG	2 cut(s)	222, 285
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	112, 262
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	109, 259
BstNI	CCWGG	2 cut(s)	222, 285
BstSCI	CCNGG	2 cut(s)	220, 283
BstV2I	GAAGAC	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	40, 82, 150
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	5 cut(s)	69, 174, 201, 209, 226
CviKI_1	RGCY	5 cut(s)	69, 174, 201, 209, 226
CviQI	GTAC	3 cut(s)	40, 82, 150
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	111, 261
DpnII	GATC	2 cut(s)	109, 259
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	220, 283
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	1 cut(s)	23
FaiI	YATR	7 cut(s)	21, 56, 72, 140, 154, 296, 302
FatI	CATG	1 cut(s)	19
FspBI	CTAG	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	267
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	2 cut(s)	47, 134
HphI	GGTGA	2 cut(s)	94, 136
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	52, 198
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	7 cut(s)	4, 9, 23, 119, 131, 167, 300
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	109, 259
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	9 cut(s)	57, 153, 160, 188, 207, 234, 246, 270, 297
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	328
MalI	GATC	2 cut(s)	111, 261
MboI	GATC	2 cut(s)	109, 259
MboII	GAAGA	2 cut(s)	43, 209
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	222, 285
MvaI	CCWGG	2 cut(s)	222, 285
NdeII	GATC	2 cut(s)	109, 259
NlaIII	CATG	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	47, 134
PfoI	TCCNGGA	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	220, 283
PspGI	CCWGG	2 cut(s)	220, 283
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	41, 83, 151
RsaNI	GTAC	3 cut(s)	40, 82, 150
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	109, 259
ScrFI	CCNGG	2 cut(s)	222, 285
SetI	ASST	2 cut(s)	71, 211
SfaNI	GCATC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	328
StyD4I	CCNGG	2 cut(s)	220, 283
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	311
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	47, 134
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.