Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

11445099 .. 11446465

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATGCATCTTCTCCTAGATATCTTACGTGCTCCCGATCCTACTACCTTAGAGACATTTCTAGGGAGAGTACCAATGGTTTTTAATGTTGTCATTTCGTCTCCACATGGATACTTTGGGCAAGCAAATGTCTTAGGCTTACCCGACACCGGTGGGCAGGTTGTCTATATACCGGACCAAGAGCGTGCCCTTGAGAATGAAATGCTTCAAAGAATTAAGAGGCAAGGATTAAACTTCAATCCAAGGGTCCTTATTGTAACCGAGGCTAATACACGATGCCAAGGGAACTACATGCAACTAGCGGCTAGAAAGAGTCATTGGAACAGAGCACAGCCATATTTTGCAAGTGGACCAGGTGAAAAACATGGTGGTTTGGTTGAATCCTATGGTAAGAATGCCAAACTAAGGGAACTAATAAACCTTGTCTTGGTGGCTGGTTACAATGATGGGAAGAAGTCAAAAGATAGAGAAAAGATTGCTGAGATTGAAAAGATGCATGCTCTCATTAAGGAGTACAACTTGAATGGTCAATTTCGATGGATATCTTCCCAAACTAACCGAGCACGTCATGGTGAGCTATATCGTTACATTGCAAATACCGGAGGTGTTTTTGTTCAGCCTGCACTTTATGCAGCTTTTGGACTCACGGTTGTGGAGGCCATGACTTGTGGCCTTCAAACATTTGCGACAATCGATGGTGGTCGTGTAGAGATCATGGCTGCAATTATGGCTGATTTCTTTCAATGTAGTAAGGAGGATCCTAGCTACTGGAAGAAAATTACGGATGGGGGCACGAAAAGAATTTTTGACTTATATAAGCTCTATGTTGTGGTTTATAGTGTTTTCATCAATAATGCTGGAAATTTGCTTCCCGATGACTCATTTTGGATAATGGTAAGAAATGCCAAGTTATTTTATGAATATATGAATGTGCTTGCCAACATGCTTTTAAAGAGTGTTAGTAAGGAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009414 GO:0009415 GO:0009628 GO:0009743 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0010555 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0042221 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

324

Amino Acids

36.67

Weight (kDa)

9.14

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	16 - 96	3.3e-33	Sucrose synthase first GT-B domain
Glycos_transf_1	PF00534	144 - 239	2.5e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	970
AciI	CCGC	2 cut(s)	302, 970
AclWI	GGATC	3 cut(s)	32, 752, 765
AcsI	RAATTY	2 cut(s)	801, 862
AfaI	GTAC	2 cut(s)	72, 515
AfiI	CCNNNNNNNGG	3 cut(s)	149, 405, 427
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	7 cut(s)	209, 238, 380, 488, 523, 677, 743
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	4 cut(s)	577, 635, 765, 820
AluI	AGCT	4 cut(s)	577, 635, 765, 820
Alw21I	GWGCWC	3 cut(s)	34, 331, 565
Alw26I	GTCTC	2 cut(s)	47, 105
AlwI	GGATC	3 cut(s)	32, 752, 765
AoxI	GGCC	2 cut(s)	657, 670
ApeKI	GCWGC	2 cut(s)	632, 719
ApoI	RAATTY	2 cut(s)	801, 862
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	175, 247, 350
AsuHPI	GGTGA	2 cut(s)	368, 584
AvaII	GGWCC	3 cut(s)	175, 247, 350
BaeGI	GKGCMC	2 cut(s)	190, 794
BamHI	GGATCC	1 cut(s)	757
Bbv12I	GWGCWC	3 cut(s)	34, 331, 565
BbvI	GCAGC	2 cut(s)	644, 706
BccI	CCATC	4 cut(s)	440, 531, 689, 779
BciT130I	CCWGG	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	47, 105
BfaI	CTAG	5 cut(s)	17, 62, 299, 306, 762
BfuAI	ACCTGC	1 cut(s)	148
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	3 cut(s)	303, 633, 720
BlsI	GCNGC	3 cut(s)	304, 634, 721
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	3 cut(s)	175, 247, 350
BmgBI	CACGTC	1 cut(s)	566
BmgT120I	GGNCC	3 cut(s)	175, 247, 350
BmiI	GGNNCC	2 cut(s)	248, 759
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	3 cut(s)	16, 266, 483
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	242, 261, 280
BsaWI	WCCGGW	3 cut(s)	149, 172, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 405, 427
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	242, 261, 280
BseGI	GGATG	1 cut(s)	790
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	3 cut(s)	149, 405, 427
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	773
BseSI	GKGCMC	2 cut(s)	190, 794
BseXI	GCAGC	2 cut(s)	644, 706
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	659, 672
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	693
BsiHKAI	GWGCWC	3 cut(s)	34, 331, 565
BsiSI	CCGG	3 cut(s)	150, 173, 600
BslI	CCNNNNNNNGG	3 cut(s)	149, 405, 427
BsmAI	GTCTC	2 cut(s)	47, 105
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	659, 672
Bsp1286I	GDGCHC	5 cut(s)	34, 190, 331, 565, 794
Bsp143I	GATC	3 cut(s)	37, 711, 757
BspACI	CCGC	2 cut(s)	302, 970
BspANI	GGCC	2 cut(s)	659, 672
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	248, 759
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	32, 752, 765
BsrBI	CCGCTC	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	773
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	242, 261, 280
BssMI	GATC	3 cut(s)	37, 711, 757
BssT1I	CCWWGG	2 cut(s)	242, 280
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	123, 186, 498, 621, 936
BstDEI	CTNAG	4 cut(s)	49, 133, 404, 480
BstF5I	GGATG	1 cut(s)	790
BstKTI	GATC	3 cut(s)	40, 714, 760
BstMAI	GTCTC	2 cut(s)	47, 105
BstMBI	GATC	3 cut(s)	37, 711, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 728
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	3 cut(s)	295, 500, 946
BstSCI	CCNGG	1 cut(s)	352
BstSLI	GKGCMC	2 cut(s)	190, 794
BstV1I	GCAGC	2 cut(s)	644, 706
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
Bsu15I	ATCGAT	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	659, 672
BsuTUI	ATCGAT	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	790
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	5 cut(s)	123, 186, 498, 621, 936
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	175, 247, 350
ClaI	ATCGAT	1 cut(s)	693
CsiI	ACCWGGT	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	71, 514
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	8 cut(s)	107, 292, 365, 497, 569, 661, 715, 943
CviQI	GTAC	2 cut(s)	71, 514
DdeI	CTNAG	4 cut(s)	49, 133, 404, 480
DpnI	GATC	3 cut(s)	39, 713, 759
DpnII	GATC	3 cut(s)	37, 711, 757
DraI	TTTAAA	1 cut(s)	951
Eco130I	CCWWGG	2 cut(s)	242, 280
Eco32I	GATATC	2 cut(s)	22, 543
Eco47I	GGWCC	3 cut(s)	175, 247, 350
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	2 cut(s)	22, 543
EcoT14I	CCWWGG	2 cut(s)	242, 280
EcoT22I	ATGCAT	2 cut(s)	9, 498
ErhI	CCWWGG	2 cut(s)	242, 280
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	8 cut(s)	110, 295, 368, 500, 572, 664, 718, 946
FatI	CATG	8 cut(s)	106, 291, 364, 496, 568, 660, 714, 942
Fnu4HI	GCNGC	3 cut(s)	303, 633, 720
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	3 cut(s)	303, 633, 720
FspBI	CTAG	5 cut(s)	17, 62, 299, 306, 762
GluI	GCNGC	3 cut(s)	303, 633, 720
HaeIII	GGCC	2 cut(s)	659, 672
HapII	CCGG	3 cut(s)	150, 173, 600
Hin1II	CATG	8 cut(s)	110, 295, 368, 500, 572, 664, 718, 946
HinfI	GANTC	4 cut(s)	313, 380, 642, 878
HpaII	CCGG	3 cut(s)	150, 173, 600
HphI	GGTGA	2 cut(s)	368, 584
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188III	TCNNGA	2 cut(s)	35, 872
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	2 cut(s)	28, 565
HpyCH4V	TGCA	8 cut(s)	7, 295, 344, 496, 593, 623, 632, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 728
HpyF3I	CTNAG	4 cut(s)	49, 133, 404, 480
HpySE526I	ACGT	2 cut(s)	28, 565
Hsp92II	CATG	8 cut(s)	110, 295, 368, 500, 572, 664, 718, 946
Kzo9I	GATC	3 cut(s)	37, 711, 757
LmnI	GCTCC	2 cut(s)	37, 967
Lsp1109I	GCAGC	2 cut(s)	644, 706
LweI	GCATC	3 cut(s)	16, 266, 483
MabI	ACCWGGT	1 cut(s)	352
MaeI	CTAG	5 cut(s)	17, 62, 299, 306, 762
MaeII	ACGT	2 cut(s)	28, 565
MaeIII	GTNAC	3 cut(s)	256, 437, 584
MalI	GATC	3 cut(s)	39, 713, 759
MbiI	CCGCTC	1 cut(s)	970
MboI	GATC	3 cut(s)	37, 711, 757
MboII	GAAGA	3 cut(s)	463, 537, 784
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	5 cut(s)	34, 190, 331, 565, 794
MluCI	AATT	6 cut(s)	213, 530, 723, 777, 801, 862
MlyI	GAGTC	3 cut(s)	322, 636, 872
MnlI	CCTC	5 cut(s)	213, 256, 596, 649, 748
Mph1103I	ATGCAT	2 cut(s)	9, 498
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	5 cut(s)	84, 216, 230, 507, 950
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	3 cut(s)	150, 173, 600
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	629, 728
NdeII	GATC	3 cut(s)	37, 711, 757
NlaIII	CATG	8 cut(s)	110, 295, 368, 500, 572, 664, 718, 946
NlaIV	GGNNCC	2 cut(s)	248, 759
NsiI	ATGCAT	2 cut(s)	9, 498
NspI	RCATGY	3 cut(s)	295, 500, 946
OliI	CACNNNNGTG	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	380
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	304, 634, 721
PleI	GAGTC	3 cut(s)	321, 636, 872
PpsI	GAGTC	3 cut(s)	321, 636, 872
Ppu21I	YACGTR	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	248, 759
PspPI	GGNCC	3 cut(s)	175, 247, 350
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	2 cut(s)	72, 515
RsaNI	GTAC	2 cut(s)	71, 514
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	5 cut(s)	84, 216, 230, 507, 950
SatI	GCNGC	3 cut(s)	303, 633, 720
Sau3AI	GATC	3 cut(s)	37, 711, 757
Sau96I	GGNCC	3 cut(s)	175, 247, 350
SchI	GAGTC	3 cut(s)	322, 636, 872
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	5 cut(s)	34, 190, 331, 565, 794
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	3 cut(s)	16, 266, 483
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	3 cut(s)	175, 247, 350
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	6 cut(s)	213, 530, 723, 777, 801, 862
SsiI	CCGC	2 cut(s)	302, 970
SspMI	CTAG	5 cut(s)	17, 62, 299, 306, 762
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	2 cut(s)	242, 280
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	2 cut(s)	31, 568
TaqI	TCGA	2 cut(s)	535, 693
TasI	AATT	6 cut(s)	213, 530, 723, 777, 801, 862
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	5 cut(s)	84, 216, 230, 507, 950
Tru9I	TTAA	5 cut(s)	84, 216, 230, 507, 950
TseI	GCWGC	2 cut(s)	632, 719
TspDTI	ATGAA	4 cut(s)	213, 835, 933, 941
TspGWI	ACGGA	1 cut(s)	797
VpaK11BI	GGWCC	3 cut(s)	175, 247, 350
XapI	RAATTY	2 cut(s)	801, 862
XceI	RCATGY	3 cut(s)	295, 500, 946
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	5 cut(s)	17, 62, 299, 306, 762
Zsp2I	ATGCAT	2 cut(s)	9, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.