Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Reverse (-)

32648408 .. 32648967

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAGAGCTTTTAAGACATCCAAGAGTAATGAAAAAATTGCAAAATGAGGTCAGGGAAATAGCAGGAAACAAAGTAGAGATCACCGAGGATGATTTGAATGGAATGAAGTACTTGAAGGCTGTGATCAAAGAAACTCTTCGCTTACATCCTCCGTTTACTTTATTATTCAGGATGTCAACTGAAGATAAGAAAATAAAGGGTTACAACATTAAAGCCAACACTCAAATTATAGTTAACGCATGGCAGATAGGAAGAGATCCCAAATCATACAACAACCCAGACAACTATGAACCAGAAAGGTTTTTGAACAGTGATGTAGATTATATAGGGAATCATTTCGAATTTATTCCATTTGGGGCTGGAAGGAGGAGATGTCCCGGAATTCAGTTTGCCGCTATGGTTAGTGAGATTGCTTTGGCAAATTTGGTGTACCTGTTCGACTGGGCAGTGCCCGGTGGACTAGGGGTACATGATATAGACATGACTGAATCCACTGGCGTTATAACACAAATGAAGTATCCTCTCAAAGCCGTTGCTATCCCCTATTTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

185

Amino Acids

21.06

Weight (kDa)

7.81

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 170	5e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	3 cut(s)	344, 384, 424
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	113, 434, 471
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	100, 118, 310
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AlwI	GGATC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	344, 384, 424
Asp700I	GAANNNNTTC	3 cut(s)	138, 338, 348
AsuC2I	CCSGG	2 cut(s)	381, 456
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	518
BciVI	GTATCC	1 cut(s)	531
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	381, 456
BfaI	CTAG	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	381, 456
BmrFI	CCNGG	2 cut(s)	381, 456
BmrI	ACTGGG	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	381, 456
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	449, 502
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	19, 97, 148, 180
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseNI	ACTGG	2 cut(s)	449, 502
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	381, 456
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	81, 126, 259
BspACI	CCGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	449, 502
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	81, 126, 259
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	144, 250
BstBI	TTCGAA	1 cut(s)	342
BstF5I	GGATG	4 cut(s)	19, 97, 148, 180
BstKTI	GATC	3 cut(s)	84, 129, 262
BstMBI	GATC	3 cut(s)	81, 126, 259
BstSCI	CCNGG	2 cut(s)	379, 454
BstSLI	GKGCMC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	531
BtsCI	GGATG	4 cut(s)	19, 97, 148, 180
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	319, 456, 495
Csp6I	GTAC	3 cut(s)	112, 433, 470
CviAII	CATG	3 cut(s)	243, 473, 484
CviJI	RGCY	5 cut(s)	10, 122, 218, 362, 533
CviKI_1	RGCY	5 cut(s)	10, 122, 218, 362, 533
CviQI	GTAC	3 cut(s)	112, 433, 470
DpnI	GATC	3 cut(s)	83, 128, 261
DpnII	GATC	3 cut(s)	81, 126, 259
Eam1104I	CTCTTC	2 cut(s)	144, 250
EarI	CTCTTC	2 cut(s)	144, 250
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	384
FaeI	CATG	3 cut(s)	246, 476, 487
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	3 cut(s)	242, 472, 483
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	4 cut(s)	6, 104, 135, 187
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	1 cut(s)	396
HapII	CCGG	2 cut(s)	381, 456
Hin1II	CATG	3 cut(s)	246, 476, 487
HincII	GTYRAC	2 cut(s)	180, 238
HindII	GTYRAC	2 cut(s)	180, 238
HinfI	GANTC	2 cut(s)	334, 491
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	381, 456
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	5 cut(s)	159, 180, 238, 433, 461
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	5 cut(s)	159, 180, 238, 433, 461
HpyAV	CCTTC	2 cut(s)	112, 360
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	246, 476, 487
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	81, 126, 259
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	83, 128, 261
MboI	GATC	3 cut(s)	81, 126, 259
MboII	GAAGA	3 cut(s)	131, 197, 267
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	5 cut(s)	38, 228, 344, 384, 424
MnlI	CCTC	5 cut(s)	43, 82, 162, 363, 534
MroXI	GAANNNNTTC	3 cut(s)	138, 338, 348
MseI	TTAA	3 cut(s)	14, 213, 237
MspI	CCGG	2 cut(s)	381, 456
MspR9I	CCNGG	2 cut(s)	381, 456
NciI	CCSGG	2 cut(s)	381, 456
NdeII	GATC	3 cut(s)	81, 126, 259
NlaIII	CATG	3 cut(s)	246, 476, 487
NspV	TTCGAA	1 cut(s)	342
PdmI	GAANNNNTTC	3 cut(s)	138, 338, 348
PfeI	GAWTC	2 cut(s)	334, 491
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	3 cut(s)	113, 434, 471
RsaNI	GTAC	3 cut(s)	112, 433, 470
SaqAI	TTAA	3 cut(s)	14, 213, 237
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	81, 126, 259
ScaI	AGTACT	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	381, 456
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	4 cut(s)	12, 54, 305, 438
SfuI	TTCGAA	1 cut(s)	342
Sse9I	AATT	5 cut(s)	38, 228, 344, 384, 424
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	379, 454
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	342, 441
TasI	AATT	5 cut(s)	38, 228, 344, 384, 424
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	334, 491
Tru1I	TTAA	3 cut(s)	14, 213, 237
Tru9I	TTAA	3 cut(s)	14, 213, 237
TscAI	CASTG	3 cut(s)	319, 456, 502
TspDTI	ATGAA	4 cut(s)	47, 122, 306, 530
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	3 cut(s)	319, 456, 502
XapI	RAATTY	3 cut(s)	344, 384, 424
XmnI	GAANNNNTTC	3 cut(s)	138, 338, 348
XspI	CTAG	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.