Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

53591591 .. 53592263

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

GTTACTCGACTGCTACCTGATGCAAAAGGAACAACATGCAACCAGAGATTGGAAAGAGTTGGTGGTACAGAAAACACATATATCTTGCGGGTACCCTTCAGGACTAAGAATGGAATTCTCCGGAAATGGATTTCAAGGTTTGATGTCTGGCCTTACTTGGAGACCTTTGCAGAGGATGCATCAAACGAAATTGCTGCTGAGCTACTGGGTGTTCCAGATCTGATCATTGGAAACTACAATGATGGAAATCTTGTTGCAACTTTGTTATCTTATAAACTAGGAATCACACAATGCAACATCGCTCATGCATTGGAGAAGACAAAGTACCCAGATTCTGATATATTTTGGAAAAGCTATGAGGACAAGTACCATTTCTCAAGTCAATTCACCGCCAATCTCATTGCAATGAACAATGCAGATTTCATAATCACCAGTACATACCAAGAGATTGCGGGAAGGTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

155

Amino Acids

17.64

Weight (kDa)

5.69

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	1 - 152	1.6e-83	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	3 cut(s)	88, 390, 452
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	5 cut(s)	67, 93, 326, 368, 436
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	135
AluBI	AGCT	2 cut(s)	202, 354
AluI	AGCT	2 cut(s)	202, 354
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	379, 421
BanI	GGYRCC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	278, 466
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	93
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	10, 166, 188
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	210, 432
Bse3DI	GCAATG	2 cut(s)	399, 411
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	120
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	399, 411
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	210, 432
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	217, 222
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	88, 390, 452
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	399, 411
BsrI	ACTGG	2 cut(s)	210, 432
BssMI	GATC	2 cut(s)	217, 222
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	105, 198
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	220, 225
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	217, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	335
Csp6I	GTAC	5 cut(s)	66, 92, 325, 367, 435
CviAII	CATG	2 cut(s)	36, 305
CviJI	RGCY	3 cut(s)	151, 202, 354
CviKI_1	RGCY	3 cut(s)	151, 202, 354
CviQI	GTAC	5 cut(s)	66, 92, 325, 367, 435
DdeI	CTNAG	2 cut(s)	105, 198
DpnI	GATC	2 cut(s)	219, 224
DpnII	GATC	2 cut(s)	217, 222
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	114
EcoT22I	ATGCAT	2 cut(s)	181, 310
FaeI	CATG	2 cut(s)	39, 308
FaiI	YATR	9 cut(s)	37, 79, 81, 273, 306, 341, 357, 425, 439
FatI	CATG	2 cut(s)	35, 304
FauI	CCCGC	2 cut(s)	81, 445
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	278, 466
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	2 cut(s)	39, 308
HinfI	GANTC	2 cut(s)	282, 332
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	379, 421
Hpy188I	TCNGA	2 cut(s)	222, 337
Hpy188III	TCNNGA	3 cut(s)	100, 121, 215
HpyAV	CCTTC	2 cut(s)	106, 450
HpyCH4V	TGCA	9 cut(s)	23, 39, 170, 179, 257, 294, 308, 404, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	105, 198
Hsp92II	CATG	2 cut(s)	39, 308
Kpn2I	TCCGGA	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	217, 222
LpnPI	CCDG	9 cut(s)	30, 56, 85, 133, 134, 191, 228, 342, 445
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	3 cut(s)	10, 166, 188
MaeI	CTAG	2 cut(s)	278, 466
MalI	GATC	2 cut(s)	219, 224
MboI	GATC	2 cut(s)	217, 222
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	3 cut(s)	114, 189, 383
MnlI	CCTC	2 cut(s)	166, 352
Mph1103I	ATGCAT	2 cut(s)	181, 310
MroI	TCCGGA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	217, 222
NlaIII	CATG	2 cut(s)	39, 308
NlaIV	GGNNCC	1 cut(s)	93
NsiI	ATGCAT	2 cut(s)	181, 310
NspI	RCATGY	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	282, 332
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	5 cut(s)	67, 93, 326, 368, 436
RsaNI	GTAC	5 cut(s)	66, 92, 325, 367, 435
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	217, 222
SetI	ASST	6 cut(s)	19, 140, 167, 204, 356, 461
SfaNI	GCATC	3 cut(s)	10, 166, 188
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	3 cut(s)	114, 189, 383
SsiI	CCGC	3 cut(s)	88, 390, 452
SspMI	CTAG	2 cut(s)	278, 466
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	114, 189, 383
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	282, 332
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	412, 422
Van91I	CCANNNNNTGG	1 cut(s)	49
XapI	RAATTY	1 cut(s)	114
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	2 cut(s)	278, 466
Zsp2I	ATGCAT	2 cut(s)	181, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.