Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

41628250 .. 41642111

Gene Structure 13862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAACAACCACCCATTGAAGTATACACTTTTCAGTCAGATGAAAGACAAAGTAGCCATACTAGAACCTCCGGAGAAGACATGCTCGATCTGCTCCGACTCATTCACCCTGCTCCGTACGCTCCCTCTGAACTTTAGGAAGCTGAAGAATGTGAATGACTTCTACGTGCTGACACATGCAAGAGATTGGTGCACATCTTCTTTGCTCAATGTGGAACATCAAAGCCTCAAGAATCTGGACCACCCTTTCTCTAACACACTTGTTGAGTCAAAGGTTACTCTACTGCTACCTGATGCAAAAGGAACAACATGCAACCAGAGATTGGAAAGAGTTAGTGGTACAGAAAACACATATATCTTGCGGGTACCCTTCAGGACTAAGAATGGAATTCTTCGGAAATGGATTTCAAGGTTTGATGTCTGGCCTTACTTGGAGACCTTTGCAGAGGATGCATCAAATGAAATTGCTGCTGAGCTACAGGGTGTTCCAGATCTGATCATTGGAAACTGCAGTGATGGAAATCTTGTTGCAACTTTGTTATCTTATAAACTAGGAATCACACAGGTGAACTTTGATTTTTCAATCATTTATTTCGCGAAATGTGAAAGAACAAAGGTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

207

Amino Acids

23.64

Weight (kDa)

8.18

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	56 - 193	6.2e-47	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	1 cut(s)	596
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	164, 355
AfaI	GTAC	3 cut(s)	118, 340, 366
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	19, 408, 582
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	2 cut(s)	142, 475
AluI	AGCT	2 cut(s)	142, 475
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	428
Alw44I	GTGCAC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	422
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	158
Asp718I	GGTACC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	97, 577
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	62, 551
BfmI	CTRYAG	2 cut(s)	476, 508
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	3 cut(s)	283, 439, 461
BpiI	GAAGAC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	70
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	462
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	1 cut(s)	424
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	71
BsiWI	CGTACG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	424
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	87, 490, 495
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp68I	TCGCGA	1 cut(s)	596
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	463
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	428
BssMI	GATC	3 cut(s)	87, 490, 495
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	378, 471
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	3 cut(s)	90, 493, 498
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	3 cut(s)	87, 490, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 118, 449
BstNSI	RCATGY	3 cut(s)	84, 179, 312
BstSFI	CTRYAG	2 cut(s)	476, 508
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BstZ17I	GTATAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
BtuMI	TCGCGA	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	117, 339, 365
CviAII	CATG	3 cut(s)	81, 176, 309
CviJI	RGCY	5 cut(s)	56, 142, 225, 424, 475
CviKI_1	RGCY	5 cut(s)	56, 142, 225, 424, 475
CviQI	GTAC	3 cut(s)	117, 339, 365
DdeI	CTNAG	2 cut(s)	378, 471
DpnI	GATC	3 cut(s)	89, 492, 497
DpnII	GATC	3 cut(s)	87, 490, 495
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	164, 355
EcoRI	GAATTC	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	3 cut(s)	84, 179, 312
FaiI	YATR	9 cut(s)	24, 59, 82, 177, 310, 352, 354, 546, 622
FatI	CATG	3 cut(s)	80, 175, 308
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	62, 551
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	3 cut(s)	84, 179, 312
HinfI	GANTC	4 cut(s)	98, 232, 266, 555
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	97, 577
Hpy166II	GTNNAC	3 cut(s)	24, 192, 568
Hpy188I	TCNGA	5 cut(s)	39, 97, 129, 396, 495
Hpy188III	TCNNGA	6 cut(s)	71, 229, 236, 373, 488, 595
Hpy8I	GTNNAC	3 cut(s)	24, 192, 568
HpyAV	CCTTC	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	8 cut(s)	179, 192, 296, 312, 443, 452, 510, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 118, 449
HpyF3I	CTNAG	2 cut(s)	378, 471
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	84, 179, 312
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	87, 490, 495
LmnI	GCTCC	3 cut(s)	98, 117, 126
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	3 cut(s)	283, 439, 461
MaeI	CTAG	2 cut(s)	62, 551
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	89, 492, 497
MboI	GATC	3 cut(s)	87, 490, 495
MboII	GAAGA	4 cut(s)	88, 157, 189, 383
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	2 cut(s)	387, 462
MlyI	GAGTC	2 cut(s)	92, 275
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	78, 135, 236, 439
Mph1103I	ATGCAT	1 cut(s)	454
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	563
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	90, 118, 449
NdeII	GATC	3 cut(s)	87, 490, 495
NlaIII	CATG	3 cut(s)	84, 179, 312
NlaIV	GGNNCC	1 cut(s)	366
NruI	TCGCGA	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	3 cut(s)	84, 179, 312
OliI	CACNNNNGTG	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	232, 555
Pfl23II	CGTACG	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	2 cut(s)	92, 274
PpsI	GAGTC	2 cut(s)	92, 274
Ppu21I	YACGTR	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	546
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	490
RruI	TCGCGA	1 cut(s)	596
RsaI	GTAC	3 cut(s)	118, 340, 366
RsaNI	GTAC	3 cut(s)	117, 339, 365
RseI	CAYNNNNRTG	1 cut(s)	563
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	87, 490, 495
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	92, 275
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	3 cut(s)	283, 439, 461
SfcI	CTRYAG	2 cut(s)	476, 508
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	387, 462
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	62, 551
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	387, 462
TfiI	GAWTC	2 cut(s)	232, 555
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	3 cut(s)	17, 56, 474
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	322
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	3 cut(s)	84, 179, 312
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	62, 551
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.