Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Reverse (-)

32519814 .. 32522435

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGGGTTTTTGTTTTCACACAGGGCTCGAGATACCATTGAACTTGATGAAACTGAAGACAAGATCTTTGAGAGGCAGCTTGGAACGCTTGACCATTATGGACTTAAGACTGAGCTTCGTGTCGCAGGTGGATGGGTCATTGATAAGCTTCTGGGAAAAGAGTGCAAGGATATCGACATTGCTTTGGAAAATATGATGGGCAGCAAATTTGTTGACAAGGTGAGAGACTGCTTGTTGTCTGTGGGGGAAGAGGTTCAAGGAATCGCTATCATTCCAAGTAATCCCGATCAATCAAAACATTTGGAAACGGCGAGGATGCGCATCTTAAATGTATGGGTTGATTTTGTGAACTTACATTGTGAAGAGTACAGTGATGATAGCCGGATTCCTACTATGGTAAATTCTTGCTCTGGGATGTATGGATCTTCTAGAGTTTTGTTTGTTACTGATTTGAGCTTGAGGACATTAGTCACATTACCTTACTTTGAAATAAAGGTAGAGAGTACACTGAAAATAGCCACATCCTCTTACTTTTGTCTAAGGAAGGATGGAACCAGATTTAGGCATTTAGCTCTTAAAGTTCTGAGATCGACAGTGTCTTTTGAGTGTATAAGCTCCATTATTTTGGGCAATTCAAAAGCTATGGGAGATTTGACATCTTCATATGTGTTCTGTCTCACAAACAAAATAACACCAAGATCTGGAGTTATGATGGGTGAGGAAAAGGAAACTAGATTATACATGAAGCCAAGCGCAAAGTTCAATTTCATACTCGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAAAGCGAATTGGAGCTGAAATTGATCTGATGATCTCTGCAAACCAACCTGTCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCGCACTGTGAGCCATCAGAAGGATGCGACAGCGATTGTGTCGCGTACTTGGATTGTACATGGAATCCTATTCATTTAGTGGGGCACTCTATCTTCAATGACGAACAAAGAATGCTCTCCTTTTATGCTGCAATGTTCCTTCAACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTAGGGCTTTCTTCACCTCTTTTGAAAACAATATTTAATTCTACAAATGGCGTTGAAGTTTCTGAACAAAGAAGGGAAGAGAACTTCTGGAGGGGCTTAGAATGGAGTGTGAGCAAGAACGGGAATGGAAATGGGAAGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

426

Amino Acids

48.26

Weight (kDa)

6.2

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	39 - 125	2.3e-12	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc16I	TGCGCA	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccII	CGCG	1 cut(s)	995
AciI	CCGC	1 cut(s)	953
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	206, 400
AcuI	CTGAAG	2 cut(s)	75, 925
AfaI	GTAC	4 cut(s)	368, 505, 998, 1009
AfiI	CCNNNNNNNGG	3 cut(s)	561, 701, 971
AflII	CTTAAG	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	219, 680
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	6 cut(s)	76, 201, 794, 797, 818, 1079
ApoI	RAATTY	2 cut(s)	206, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	321, 755
AsuHPI	GGTGA	3 cut(s)	232, 728, 1140
AvaI	CYCGRG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	1038
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	4 cut(s)	63, 931, 938, 1109
BbvI	GCAGC	6 cut(s)	88, 213, 781, 784, 805, 1066
BccI	CCATC	5 cut(s)	126, 190, 542, 706, 973
BceAI	ACGGC	1 cut(s)	324
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BcoDI	GTCTC	2 cut(s)	219, 680
BfaI	CTAG	2 cut(s)	429, 732
BfrI	CTTAAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	116
BglII	AGATCT	2 cut(s)	63, 698
BisI	GCNGC	6 cut(s)	77, 202, 795, 798, 819, 1080
BlsI	GCNGC	6 cut(s)	78, 203, 796, 799, 820, 1081
BmeT110I	CYCGRG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	553
BmsI	GCATC	3 cut(s)	306, 330, 965
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	4 cut(s)	63, 931, 938, 1109
BpmI	CTGGAG	2 cut(s)	723, 1243
BpuEI	CTTGAG	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	3 cut(s)	561, 701, 971
Bse3DI	GCAATG	2 cut(s)	177, 1089
Bse8I	GATNNNNATC	1 cut(s)	320
BseGI	GGATG	7 cut(s)	137, 321, 420, 521, 553, 949, 980
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	3 cut(s)	561, 701, 971
BseMI	GCAATG	2 cut(s)	177, 1089
BseMII	CTCAG	2 cut(s)	102, 575
BseSI	GKGCMC	1 cut(s)	1038
BseXI	GCAGC	6 cut(s)	88, 213, 781, 784, 805, 1066
Bsh1236I	CGCG	1 cut(s)	995
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	561, 701, 971
BsmAI	GTCTC	2 cut(s)	219, 680
BsmI	GAATGC	1 cut(s)	1068
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	28, 1038
Bsp1407I	TGTACA	1 cut(s)	1007
Bsp143I	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
BspACI	CCGC	1 cut(s)	953
BspCNI	CTCAG	2 cut(s)	103, 576
BspFNI	CGCG	1 cut(s)	995
BspLI	GGNNCC	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	177, 1089
BsrGI	TGTACA	1 cut(s)	1007
BssMI	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
Bst4CI	ACNGT	3 cut(s)	371, 595, 959
Bst6I	CTCTTC	3 cut(s)	243, 357, 1206
BstAFI	CTTAAG	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	1007
BstDEI	CTNAG	5 cut(s)	111, 539, 584, 1097, 1231
BstF5I	GGATG	7 cut(s)	137, 321, 420, 521, 553, 949, 980
BstFNI	CGCG	1 cut(s)	995
BstHHI	GCGC	2 cut(s)	321, 755
BstKTI	GATC	7 cut(s)	66, 289, 425, 590, 701, 868, 876
BstMAI	GTCTC	2 cut(s)	219, 680
BstMBI	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 827, 961
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	6 cut(s)	88, 213, 781, 784, 805, 1066
BstV2I	GAAGAC	4 cut(s)	63, 931, 938, 1109
BstX2I	RGATCY	3 cut(s)	63, 422, 698
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstYI	RGATCY	3 cut(s)	63, 422, 698
BtsCI	GGATG	7 cut(s)	137, 321, 420, 521, 553, 949, 980
BtsIMutI	CAGTG	4 cut(s)	376, 506, 600, 955
BveI	ACCTGC	1 cut(s)	116
CfoI	GCGC	2 cut(s)	321, 755
Csp6I	GTAC	4 cut(s)	367, 504, 997, 1008
CviAII	CATG	3 cut(s)	742, 1011, 1108
CviQI	GTAC	4 cut(s)	367, 504, 997, 1008
DdeI	CTNAG	5 cut(s)	111, 539, 584, 1097, 1231
DpnI	GATC	7 cut(s)	65, 288, 424, 589, 700, 867, 875
DpnII	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
Eam1104I	CTCTTC	3 cut(s)	243, 357, 1206
EarI	CTCTTC	3 cut(s)	243, 357, 1206
Eco24I	GRGCYC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	75, 925
Eco88I	CYCGRG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	3 cut(s)	745, 1014, 1111
FatI	CATG	3 cut(s)	741, 1010, 1107
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	6 cut(s)	77, 202, 795, 798, 819, 1080
FokI	GGATG	7 cut(s)	144, 328, 427, 508, 560, 936, 987
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	6 cut(s)	77, 202, 795, 798, 819, 1080
FspAI	RTGCGCAY	1 cut(s)	320
FspBI	CTAG	2 cut(s)	429, 732
FspI	TGCGCA	1 cut(s)	320
GlaI	GCGC	2 cut(s)	320, 754
GluI	GCNGC	6 cut(s)	77, 202, 795, 798, 819, 1080
GsuI	CTGGAG	2 cut(s)	723, 1243
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	2 cut(s)	321, 755
Hin1II	CATG	3 cut(s)	745, 1014, 1111
Hin6I	GCGC	2 cut(s)	319, 753
HinP1I	GCGC	2 cut(s)	319, 753
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	261, 385, 1015
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	3 cut(s)	232, 728, 1140
Hpy166II	GTNNAC	3 cut(s)	214, 349, 506
Hpy188I	TCNGA	4 cut(s)	585, 870, 970, 1198
Hpy188III	TCNNGA	5 cut(s)	29, 284, 429, 702, 1222
Hpy8I	GTNNAC	3 cut(s)	214, 349, 506
HpyAV	CCTTC	4 cut(s)	538, 965, 1100, 1200
HpyCH4III	ACNGT	3 cut(s)	371, 595, 959
HpyCH4V	TGCA	3 cut(s)	165, 881, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 827, 961
HpyF3I	CTNAG	5 cut(s)	111, 539, 584, 1097, 1231
Hsp92II	CATG	3 cut(s)	745, 1014, 1111
HspAI	GCGC	2 cut(s)	319, 753
Kzo9I	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
LmnI	GCTCC	2 cut(s)	620, 854
Lsp1109I	GCAGC	6 cut(s)	88, 213, 781, 784, 805, 1066
LweI	GCATC	3 cut(s)	306, 330, 965
MaeI	CTAG	2 cut(s)	429, 732
MaeIII	GTNAC	3 cut(s)	442, 469, 914
MalI	GATC	7 cut(s)	65, 288, 424, 589, 700, 867, 875
MboI	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
MflI	RGATCY	3 cut(s)	63, 422, 698
MhlI	GDGCHC	2 cut(s)	28, 1038
MluCI	AATT	8 cut(s)	206, 400, 631, 763, 834, 849, 861, 1171
MnlI	CCTC	8 cut(s)	66, 244, 306, 453, 535, 712, 1161, 1218
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	105, 326, 576, 1170
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	1068
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	3 cut(s)	85, 827, 961
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
NlaIII	CATG	3 cut(s)	745, 1014, 1111
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	469, 914
NsbI	TGCGCA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	1068
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	261, 385, 1015
PflFI	GACNNNGTC	1 cut(s)	595
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	6 cut(s)	78, 203, 796, 799, 820, 1081
PshAI	GACNNNNGTC	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	553
PsuI	RGATCY	3 cut(s)	63, 422, 698
PsyI	GACNNNGTC	1 cut(s)	595
RsaI	GTAC	4 cut(s)	368, 505, 998, 1009
RsaNI	GTAC	4 cut(s)	367, 504, 997, 1008
SaqAI	TTAA	4 cut(s)	105, 326, 576, 1170
SatI	GCNGC	6 cut(s)	77, 202, 795, 798, 819, 1080
Sau3AI	GATC	7 cut(s)	63, 286, 422, 587, 698, 865, 873
SduI	GDGCHC	2 cut(s)	28, 1038
SfaNI	GCATC	3 cut(s)	306, 330, 965
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	27, 104, 457
SmoI	CTYRAG	3 cut(s)	27, 104, 457
Sse9I	AATT	8 cut(s)	206, 400, 631, 763, 834, 849, 861, 1171
SsiI	CCGC	1 cut(s)	953
SspI	AATATT	1 cut(s)	1167
SspMI	CTAG	2 cut(s)	429, 732
TaaI	ACNGT	3 cut(s)	371, 595, 959
TaqI	TCGA	4 cut(s)	28, 174, 590, 774
TasI	AATT	8 cut(s)	206, 400, 631, 763, 834, 849, 861, 1171
TatI	WGTACW	3 cut(s)	366, 503, 1007
TfiI	GAWTC	3 cut(s)	261, 385, 1015
Tru1I	TTAA	4 cut(s)	105, 326, 576, 1170
Tru9I	TTAA	4 cut(s)	105, 326, 576, 1170
TscAI	CASTG	4 cut(s)	376, 513, 600, 962
TseFI	GTSAC	2 cut(s)	469, 914
TseI	GCWGC	6 cut(s)	76, 201, 794, 797, 818, 1079
Tsp45I	GTSAC	2 cut(s)	469, 914
TspDTI	ATGAA	8 cut(s)	63, 651, 757, 758, 792, 822, 938, 1013
TspRI	CASTG	4 cut(s)	376, 513, 600, 962
Tth111I	GACNNNGTC	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	701
Vha464I	CTTAAG	1 cut(s)	104
XapI	RAATTY	2 cut(s)	206, 400
XbaI	TCTAGA	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	429, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.