Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

12951542 .. 12954926

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1164100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCGCAACACCATTCAGGACACCCTCGCTGCTCACCGCAATGAGCTCGTTTCTCTTCTCTCCAGGTATGTTGCTCGAGAAAATGGGATTCTGCAACCCCATCAAATGATAAACGAGCTCGAAAACGTGATCATGGAGGATGAAGGCATGCAGAAGCTCAAAGATAGCTCCTTCAGCAAAGTCTTACAGTCTGCTCAGGAAGCAATTGTCCTGGCACCTTTCGTGGCTTTTGCCCTTCGTCCAAGGCCTGGTGTTTGGGAGTATGTTCGAGTTAATGTGTATGAACTTAGTGTGGATCATTTGAGTGTTGCTGAATTTCTTCGGTTCAAGGAAGAGCTTATGGACGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

5.06

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_N	PF24861	1 - 111	2.7e-46	Sucrose synthase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	62, 210, 247
AluBI	AGCT	5 cut(s)	46, 118, 157, 168, 337
AluI	AGCT	5 cut(s)	46, 118, 157, 168, 337
Alw21I	GWGCWC	2 cut(s)	48, 120
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	2 cut(s)	48, 120
Bbv12I	GWGCWC	2 cut(s)	48, 120
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	3 cut(s)	64, 212, 249
BclI	TGATCA	1 cut(s)	129
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	64, 212, 249
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	64, 212, 249
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	64, 212, 249
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	48, 120
BsiHKCI	CYCGRG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	248
BsnI	GGCC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	48, 120
Bsp143I	GATC	2 cut(s)	129, 295
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	129, 295
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	64, 212, 249
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	60, 327
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	195, 287
BstF5I	GGATG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	132, 298
BstMBI	GATC	2 cut(s)	129, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 200
BstNI	CCWGG	3 cut(s)	64, 212, 249
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	62, 210, 247
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	6
CviAII	CATG	2 cut(s)	133, 148
CviJI	RGCY	7 cut(s)	46, 118, 157, 168, 227, 247, 337
CviKI_1	RGCY	7 cut(s)	46, 118, 157, 168, 227, 247, 337
DdeI	CTNAG	2 cut(s)	195, 287
DpnI	GATC	2 cut(s)	131, 297
DpnII	GATC	2 cut(s)	129, 295
Eam1104I	CTCTTC	2 cut(s)	60, 327
EarI	CTCTTC	2 cut(s)	60, 327
Ecl136II	GAGCTC	2 cut(s)	46, 118
Eco130I	CCWWGG	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	2 cut(s)	48, 120
Eco53kI	GAGCTC	2 cut(s)	46, 118
Eco57I	CTGAAG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	46, 118
EcoRII	CCWGG	3 cut(s)	62, 210, 247
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	2 cut(s)	48, 120
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	136, 151
FaiI	YATR	6 cut(s)	69, 134, 149, 264, 282, 341
FatI	CATG	2 cut(s)	132, 147
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	48, 120
Fsp4HI	GCNGC	1 cut(s)	30
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	136, 151
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	26
Hpy188III	TCNNGA	3 cut(s)	17, 77, 197
HpyAV	CCTTC	3 cut(s)	137, 181, 245
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	94, 151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 200
HpyF3I	CTNAG	2 cut(s)	195, 287
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	136, 151
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 295
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	8 cut(s)	2, 49, 76, 182, 197, 224, 234, 261
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	131, 297
MboI	GATC	2 cut(s)	129, 295
MboII	GAAGA	3 cut(s)	47, 311, 344
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	48, 120
MluCI	AATT	2 cut(s)	204, 314
MnlI	CCTC	2 cut(s)	35, 130
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	2 cut(s)	39, 303
MspR9I	CCNGG	3 cut(s)	64, 212, 249
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	3 cut(s)	64, 212, 249
MwoI	GCNNNNNNNGC	2 cut(s)	174, 200
NdeII	GATC	2 cut(s)	129, 295
NlaIII	CATG	2 cut(s)	136, 151
NlaIV	GGNNCC	1 cut(s)	216
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	2 cut(s)	48, 120
Psp6I	CCWGG	3 cut(s)	62, 210, 247
PspGI	CCWGG	3 cut(s)	62, 210, 247
PspN4I	GGNNCC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	39, 303
SacI	GAGCTC	2 cut(s)	48, 120
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	129, 295
ScrFI	CCNGG	3 cut(s)	64, 212, 249
SduI	GDGCHC	2 cut(s)	48, 120
SetI	ASST	8 cut(s)	48, 68, 120, 129, 159, 170, 220, 339
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	39, 303
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	204, 314
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	37
SstI	GAGCTC	2 cut(s)	48, 120
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	62, 210, 247
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	76, 120, 268
TasI	AATT	2 cut(s)	204, 314
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	156, 297
Van91I	CCANNNNNTGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.