Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Reverse (-)

8434285 .. 8439503

Gene Structure 5219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTCAACCTCTTTGATATGAGTGATGGGGTTTCTAGAAACAAGCTGCTAACGAATAAATCCCACCTTGATGGTTGTTTATATACTGGATCAAGTGTGGATCAGAGATTGGAAAGAGTTAGCGGTACAGAAAACACATATATCTTGCGGGTACCCTTCAGGACTAAGAATGGAATTCTCCGGAAATGGATTTCAAGGTTTGATGTCTGGCCTTACTTGGAGACCTTTGCAGAGGATGCATCAAACGAAATTGCTGCTGAGCTACAGGGTGTTCCAGATCTGATCATTGGAAACTGCAGTGATGGAAATCTTGTTGCAACTTTGTTATCTTATAAACTAGGAATCACACAGTGCAACATTGCTCATGCATTGGAGAAGACAAAGTACCCAGATTCTGATATATTTTGGAAAAGCTATGAGGACAAGTACCATTTCTCAAGTCAATTCACCGCCGATCTCATTGCAATGAACAATGCAGATTTCATAATCACCAGTACATACCAAGAGATTGCGGGAAGGTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

175

Amino Acids

19.83

Weight (kDa)

5.16

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	30 - 172	1.5e-77	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	151
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	4 cut(s)	123, 148, 450, 512
AclWI	GGATC	2 cut(s)	97, 108
AcsI	RAATTY	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	142
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	5 cut(s)	127, 153, 386, 428, 496
AgsI	TTSAA	1 cut(s)	195
AluBI	AGCT	3 cut(s)	46, 262, 414
AluI	AGCT	3 cut(s)	46, 262, 414
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	97, 108
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	46, 254
ApoI	RAATTY	1 cut(s)	174
Asp718I	GGTACC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	439, 481
BanI	GGYRCC	1 cut(s)	151
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	33, 241
BccI	CCATC	3 cut(s)	20, 65, 296
BcgI	CGANNNNNNTGC	4 cut(s)	236, 270, 443, 477
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	36, 338, 526
BfmI	CTRYAG	2 cut(s)	263, 295
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	2 cut(s)	47, 255
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	2 cut(s)	48, 256
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	226, 248
BpiI	GAAGAC	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	91, 492
Bse3DI	GCAATG	3 cut(s)	357, 459, 471
Bse8I	GATNNNNATC	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	180
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	3 cut(s)	357, 459, 471
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	91, 492
BseXI	GCAGC	2 cut(s)	33, 241
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	89, 100, 277, 282, 454
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	4 cut(s)	123, 148, 450, 512
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	2 cut(s)	97, 108
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	357, 459, 471
BsrI	ACTGG	2 cut(s)	91, 492
BssMI	GATC	5 cut(s)	89, 100, 277, 282, 454
Bst4CI	ACNGT	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	165, 258
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	5 cut(s)	92, 103, 280, 285, 457
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	5 cut(s)	89, 100, 277, 282, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSFI	CTRYAG	2 cut(s)	263, 295
BstV1I	GCAGC	2 cut(s)	33, 241
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 356
CaiI	CAGNNNCTG	1 cut(s)	395
Csp6I	GTAC	5 cut(s)	126, 152, 385, 427, 495
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	4 cut(s)	46, 211, 262, 414
CviKI_1	RGCY	4 cut(s)	46, 211, 262, 414
CviQI	GTAC	5 cut(s)	126, 152, 385, 427, 495
DdeI	CTNAG	2 cut(s)	165, 258
DpnI	GATC	5 cut(s)	91, 102, 279, 284, 456
DpnII	GATC	5 cut(s)	89, 100, 277, 282, 454
DraIII	CACNNNGTG	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	174
EcoT22I	ATGCAT	2 cut(s)	241, 370
FaeI	CATG	1 cut(s)	368
FatI	CATG	1 cut(s)	364
FauI	CCCGC	2 cut(s)	141, 505
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	47, 255
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	47, 255
FspBI	CTAG	3 cut(s)	36, 338, 526
GluI	GCNGC	2 cut(s)	47, 255
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	342, 392
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	439, 481
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	105, 282, 397
Hpy188III	TCNNGA	4 cut(s)	36, 160, 181, 275
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	166, 510
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	8 cut(s)	230, 239, 297, 317, 354, 368, 464, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	165, 258
Hsp92II	CATG	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	180
KpnI	GGTACC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	89, 100, 277, 282, 454
LpnPI	CCDG	8 cut(s)	72, 145, 193, 194, 251, 288, 402, 505
Lsp1109I	GCAGC	2 cut(s)	33, 241
LweI	GCATC	2 cut(s)	226, 248
MaeI	CTAG	3 cut(s)	36, 338, 526
MalI	GATC	5 cut(s)	91, 102, 279, 284, 456
MboI	GATC	5 cut(s)	89, 100, 277, 282, 454
MboII	GAAGA	1 cut(s)	388
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	3 cut(s)	174, 249, 443
MnlI	CCTC	3 cut(s)	20, 226, 412
Mph1103I	ATGCAT	2 cut(s)	241, 370
MroI	TCCGGA	1 cut(s)	180
MslI	CAYNNNNRTG	2 cut(s)	69, 464
MspI	CCGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	5 cut(s)	89, 100, 277, 282, 454
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	153
NsiI	ATGCAT	2 cut(s)	241, 370
PfeI	GAWTC	2 cut(s)	342, 392
PkrI	GCNGC	2 cut(s)	48, 256
PsiI	TTATAA	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	5 cut(s)	127, 153, 386, 428, 496
RsaNI	GTAC	5 cut(s)	126, 152, 385, 427, 495
RseI	CAYNNNNRTG	2 cut(s)	69, 464
SatI	GCNGC	2 cut(s)	47, 255
Sau3AI	GATC	5 cut(s)	89, 100, 277, 282, 454
SetI	ASST	8 cut(s)	12, 48, 69, 200, 227, 264, 416, 521
SfaNI	GCATC	2 cut(s)	226, 248
SfcI	CTRYAG	2 cut(s)	263, 295
SmiMI	CAYNNNNRTG	2 cut(s)	69, 464
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	3 cut(s)	174, 249, 443
SsiI	CCGC	4 cut(s)	123, 148, 450, 512
SspMI	CTAG	3 cut(s)	36, 338, 526
TaaI	ACNGT	1 cut(s)	351
TasI	AATT	3 cut(s)	174, 249, 443
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	342, 392
TscAI	CASTG	2 cut(s)	304, 356
TseI	GCWGC	2 cut(s)	46, 254
TspDTI	ATGAA	2 cut(s)	472, 482
TspRI	CASTG	2 cut(s)	304, 356
XapI	RAATTY	1 cut(s)	174
XbaI	TCTAGA	1 cut(s)	35
XspI	CTAG	3 cut(s)	36, 338, 526
Zsp2I	ATGCAT	2 cut(s)	241, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.