Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Reverse (-)

19502019 .. 19502567

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTACATCGATATTAGGCATGCGATTCTCCTAGCAATCAACATTTTGAAATATGGAGTAGGAATGTCATGGGATTGGGATCCTTACAATACAATCAGCAACCTCACCTCGATAAAAGCAGTTGTTCATATCATTCTCTTTGTGGTCTTTCCCTTCATCTCCATCAAAGTCCATGTCCCTCTAACCACTCATGCCATTACTAGGACTACCAGCACCGGAGTACTCAAGCAACTTGAAGAGCTTTCTGCACCTCTCGCGGTTACACTGGTGGCTGCTGTGCTTATCCTCCCACAAGCTATCTTCTGGTATGCCTACCTCATTATAATTCTCATCCCCTCTTGCCTCTGTGTGCTCAACCGCTTTGCGAATTGTCTCCATATTGTCCTTATTACCATACCAGTTCTTAACGTTGTACTAAGGGCAACCACTCTTCGTTGGCAAGGCGCCGTTGGGCCTGAACCTGATCATAATGAAGCAAGTGCGGGAGACACACAAGGAGTGGAGATGCGATTAGGTGAAGATCCTGAAGCTGGCAGAGTACCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

182

Amino Acids

20.04

Weight (kDa)

6.27

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	443
AccII	CGCG	1 cut(s)	257
AciI	CCGC	3 cut(s)	257, 358, 482
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	3 cut(s)	74, 87, 515
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	4 cut(s)	5, 222, 414, 540
AfiI	CCNNNNNNNGG	2 cut(s)	201, 530
AgsI	TTSAA	2 cut(s)	49, 236
AluBI	AGCT	3 cut(s)	241, 296, 530
AluI	AGCT	3 cut(s)	241, 296, 530
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	377, 480
AlwI	GGATC	3 cut(s)	74, 87, 515
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	97, 527
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	377, 480
BfaI	CTAG	3 cut(s)	32, 201, 547
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	81, 445
BmsI	GCATC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 530
Bse1I	ACTGG	3 cut(s)	270, 398, 542
Bse8I	GATNNNNATC	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	201, 530
BseNI	ACTGG	3 cut(s)	270, 398, 542
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	201, 530
BsmAI	GTCTC	2 cut(s)	377, 480
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	79, 463, 520
BspACI	CCGC	3 cut(s)	257, 358, 482
BspANI	GGCC	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	2 cut(s)	81, 445
BspPI	GGATC	3 cut(s)	74, 87, 515
BspQI	GCTCTTC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	270, 398, 542
BssMI	GATC	3 cut(s)	79, 463, 520
BssNI	GRCGYC	1 cut(s)	444
Bst6I	CTCTTC	2 cut(s)	231, 435
BstACI	GRCGYC	1 cut(s)	444
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	21, 532
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	82, 466, 523
BstMAI	GTCTC	2 cut(s)	377, 480
BstMBI	GATC	3 cut(s)	79, 463, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	23
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	79, 520
BstYI	RGATCY	2 cut(s)	79, 520
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	21, 532
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	4 cut(s)	4, 221, 413, 539
CviAII	CATG	4 cut(s)	20, 69, 173, 191
CviJI	RGCY	5 cut(s)	241, 272, 296, 454, 530
CviKI_1	RGCY	5 cut(s)	241, 272, 296, 454, 530
CviQI	GTAC	4 cut(s)	4, 221, 413, 539
DdeI	CTNAG	1 cut(s)	416
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	3 cut(s)	81, 465, 522
DpnII	GATC	3 cut(s)	79, 463, 520
Eam1104I	CTCTTC	2 cut(s)	231, 435
EarI	CTCTTC	2 cut(s)	231, 435
Eco57I	CTGAAG	1 cut(s)	546
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
FaeI	CATG	4 cut(s)	23, 72, 176, 194
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	4 cut(s)	19, 68, 172, 190
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	32, 201, 547
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	23, 72, 176, 194
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	2 cut(s)	97, 527
Hpy188III	TCNNGA	1 cut(s)	524
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	23, 72, 176, 194
HspAI	GCGC	1 cut(s)	444
KasI	GGCGCC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	79, 463, 520
LguI	GCTCTTC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	223, 229, 251, 289, 411, 468, 474, 516, 537
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	3 cut(s)	32, 201, 547
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	81, 465, 522
MboI	GATC	3 cut(s)	79, 463, 520
MboII	GAAGA	4 cut(s)	248, 292, 422, 530
MflI	RGATCY	2 cut(s)	79, 520
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	2 cut(s)	324, 367
Mly113I	GGCGCC	1 cut(s)	444
MnlI	CCTC	8 cut(s)	113, 118, 189, 261, 296, 326, 346, 353
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	1 cut(s)	444
NdeII	GATC	3 cut(s)	79, 463, 520
NlaIII	CATG	4 cut(s)	23, 72, 176, 194
NlaIV	GGNNCC	2 cut(s)	81, 445
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	274
PluTI	GGCGCC	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	81, 445
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	79, 520
RsaI	GTAC	4 cut(s)	5, 222, 414, 540
RsaNI	GTAC	4 cut(s)	4, 221, 413, 539
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	79, 463, 520
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	324, 367
SsiI	CCGC	3 cut(s)	257, 358, 482
SspDI	GGCGCC	1 cut(s)	443
SspMI	CTAG	3 cut(s)	32, 201, 547
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	9, 110
TasI	AATT	2 cut(s)	324, 367
TatI	WGTACW	3 cut(s)	3, 220, 412
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	116, 145, 486
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	3 cut(s)	32, 201, 547
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.