Rorug04G0187600

Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
32600123 .. 32605832
5710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0187600.1

Sequence Viewer

Length: 1647 bp
ATGGTGATGTCTACGCCAACTGTACATGTGAGAGATACCATTGAACTTGATGAAACTGAAGAAAAGATCTTTGAAAGGCTGCTTGGGACGCTTGACCATTATGGACTTAAGACTGAGCTTCGTGTCGCAGGTGGATGGGTCCGTGATAAGCTTCTGGGAAAAGAGTGCAAGGATATTGACATTGCTTTGGAAGATATGATGGGCAGCAAGTTTGTTGAGAAGGTGAGAGACTACTTGTTGTCTGTGGGGGACGAGGTTCAAGGAATAGCTATCATTCCAAGTAATCCCGACCAATCAAAACATTTGGAAACAGCGAGGATGCGCATCCTTAATGTATGGGTTGATTTTGTGAACTTACGTTGTGAAGAGTACAGTGATGATAGCCGCATTCCTACTATGCAAAAGTATGGCACACCAGAACAGGATGCACTGAGAAGGGATCTAACTATTAACAGCTTATTTTACAATATCAATACCAAATCCATTGAAGATTGGACTAATAGAGGAGTTGAAGATCTAAAATGTGGGAAAATTGCTAGTCCTTTACCACCAAAGGATACATTTATGGAGGATCCGCTACGAGTTCTTCGAGCTATCCGTTTTGGTGCAAGGTTCGGATTCATACTCGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCGAATTGGAGCTGAAATAATTTACTGGGAATTTAAGCTTCCAGAGATTGATCTGATGATGTCCGGAAACCAACCTGCCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTGAGTCTTCATCCACAGTGTGAGCCATCAGAAGGATGCGACAGCGATTGTGTTGCGTACTTGGATTGTACTTGGAATCTTATTCAATTAGTGGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCGTTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAAGAGTCAGCGATGCTGAAACTGTTATTAATTTGCACAATGCATTGGAGAAGTTTTTGTCTTTGCTTCCTCACTCTGTATCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTGGATGTGCCTCTTACATCGAAAGAATCAAAACTCCGAGTGTTAACAGGGTTTCTTTTACGAGAAATTAAAGATTTTTGGCGAGTTGCTTTGCTGATGTCTACACTTTTATATCCCACCAACGTCTTAGACAAGAATCTCAAACCAGAAGATCGCAGACCATTGTTTGTAGAAGCTGAAAGGGCCATAAATAATCTAGGTCTAGATAAAGTCTGGGATGTAAAGCCATTACTTAATGGAAAGGAGATCATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCATGGCAGCTTGCTCATCCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTAGATCTGCTGGAGATATGGAGGAACTGAATGCACCCAACAACAAGAAATGCAAAACTGAAGATCGTGACTAA

Protein Analysis

548

Amino Acids

62.7

Weight (kDa)

5.56

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 40 - 178 1.4e-29 Poly A polymerase head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc16I TGCGCA 1 cut(s) 323
Acc36I ACCTGC 2 cut(s) 119, 781
AccI GTMKAC 2 cut(s) 11, 1286
AccIII TCCGGA 1 cut(s) 761
AciI CCGC 2 cut(s) 385, 575
AclWI GGATC 3 cut(s) 447, 566, 579
AcsI RAATTY 1 cut(s) 728
AcuI CTGAAG 2 cut(s) 78, 1571
AdeI CACNNNGTG 1 cut(s) 842
AfaI GTAC 5 cut(s) 24, 371, 881, 892, 1573
AfiI CCNNNNNNNGG 1 cut(s) 854
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 9 cut(s) 44, 74, 260, 488, 512, 805, 908, 931, 1569
AhdI GACNNNNNGTC 1 cut(s) 1469
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
Alw26I GTCTC 2 cut(s) 222, 1038
AlwI GGATC 3 cut(s) 447, 566, 579
Aor13HI TCCGGA 1 cut(s) 761
AoxI GGCC 1 cut(s) 1368
ApeKI GCWGC 8 cut(s) 79, 204, 647, 650, 671, 962, 1447, 1504
ApoI RAATTY 1 cut(s) 728
AseI ATTAAT 1 cut(s) 1086
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 3 cut(s) 139, 1368, 1463
AsuHPI GGTGA 2 cut(s) 16, 235
AvaII GGWCC 2 cut(s) 139, 1463
BaeGI GKGCMC 1 cut(s) 921
BamHI GGATCC 1 cut(s) 571
BbsI GAAGAC 2 cut(s) 821, 992
BbvI GCAGC 8 cut(s) 66, 216, 634, 637, 658, 949, 1459, 1516
BccI CCATC 3 cut(s) 129, 193, 856
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BciVI GTATCC 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 222, 1038
BfaI CTAG 4 cut(s) 537, 1382, 1388, 1575
BfmI CTRYAG 1 cut(s) 1527
BfrI CTTAAG 1 cut(s) 107
BfuAI ACCTGC 2 cut(s) 119, 781
BfuI GTATCC 1 cut(s) 550
BglII AGATCT 3 cut(s) 66, 514, 1577
BisI GCNGC 9 cut(s) 80, 205, 385, 648, 651, 672, 963, 1448, 1505
BlsI GCNGC 9 cut(s) 81, 206, 386, 649, 652, 673, 964, 1449, 1506
BmcAI AGTACT 1 cut(s) 1573
Bme18I GGWCC 2 cut(s) 139, 1463
BmeRI GACNNNNNGTC 1 cut(s) 1469
BmgT120I GGNCC 3 cut(s) 139, 1368, 1463
BmiI GGNNCC 2 cut(s) 140, 573
BmrI ACTGGG 1 cut(s) 733
BmsI GCATC 6 cut(s) 309, 333, 415, 848, 1060, 1429
BmuI ACTGGG 1 cut(s) 733
BpiI GAAGAC 2 cut(s) 821, 992
BpmI CTGGAG 2 cut(s) 1479, 1605
BpuEI CTTGAG 2 cut(s) 844, 1526
BsaBI GATNNNNATC 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 761
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse1I ACTGG 1 cut(s) 728
Bse3DI GCAATG 2 cut(s) 180, 972
Bse8I GATNNNNATC 1 cut(s) 323
BseAI TCCGGA 1 cut(s) 761
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 2 cut(s) 180, 972
BseMII CTCAG 2 cut(s) 105, 422
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 8 cut(s) 66, 216, 634, 637, 658, 949, 1459, 1516
BshFI GGCC 1 cut(s) 1370
BsiSI CCGG 1 cut(s) 762
BslFI GGGAC 3 cut(s) 100, 263, 1537
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 2 cut(s) 222, 1038
BsmFI GGGAC 3 cut(s) 100, 263, 1537
BsmI GAATGC 3 cut(s) 387, 1541, 1609
BsnI GGCC 1 cut(s) 1370
Bsp1286I GDGCHC 1 cut(s) 921
Bsp13I TCCGGA 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
BspACI CCGC 2 cut(s) 385, 575
BspANI GGCC 1 cut(s) 1370
BspCNI CTCAG 2 cut(s) 106, 423
BspEI TCCGGA 1 cut(s) 761
BspLI GGNNCC 2 cut(s) 140, 573
BspMAI CTGCAG 1 cut(s) 1531
BspMI ACCTGC 2 cut(s) 119, 781
BspPI GGATC 3 cut(s) 447, 566, 579
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 180, 972
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 728
BssMI GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
Bst4CI ACNGT 4 cut(s) 22, 374, 840, 1081
Bst6I CTCTTC 3 cut(s) 360, 1171, 1570
BstAFI CTTAAG 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 1509
BstDEI CTNAG 3 cut(s) 114, 431, 1312
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 9 cut(s) 69, 442, 517, 574, 751, 1339, 1434, 1580, 1639
BstMAI GTCTC 2 cut(s) 222, 1038
BstMBI GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
BstMWI GCNNNNNNNGC 4 cut(s) 88, 680, 1367, 1489
BstNSI RCATGY 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 1527
BstSLI GKGCMC 1 cut(s) 921
BstV1I GCAGC 8 cut(s) 66, 216, 634, 637, 658, 949, 1459, 1516
BstV2I GAAGAC 2 cut(s) 821, 992
BstX2I RGATCY 5 cut(s) 66, 439, 514, 571, 1577
BstYI RGATCY 5 cut(s) 66, 439, 514, 571, 1577
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 1 cut(s) 1370
BtgZI GCGATG 1 cut(s) 1083
BtsIMutI CAGTG 3 cut(s) 379, 428, 845
BveI ACCTGC 2 cut(s) 119, 781
Cac8I GCNNGC 1 cut(s) 1509
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 3 cut(s) 139, 1368, 1463
CseI GACGC 1 cut(s) 97
Csp6I GTAC 5 cut(s) 23, 370, 880, 891, 1572
CviAII CATG 4 cut(s) 26, 991, 1435, 1500
CviQI GTAC 5 cut(s) 23, 370, 880, 891, 1572
DdeI CTNAG 3 cut(s) 114, 431, 1312
DpnI GATC 9 cut(s) 68, 441, 516, 573, 750, 1338, 1433, 1579, 1638
DpnII GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
DraIII CACNNNGTG 1 cut(s) 842
DriI GACNNNNNGTC 1 cut(s) 1469
Eam1104I CTCTTC 3 cut(s) 360, 1171, 1570
Eam1105I GACNNNNNGTC 1 cut(s) 1469
EarI CTCTTC 3 cut(s) 360, 1171, 1570
Eco47I GGWCC 2 cut(s) 139, 1463
Eco57I CTGAAG 2 cut(s) 78, 1571
EcoT22I ATGCAT 1 cut(s) 1102
FaeI CATG 4 cut(s) 29, 994, 1438, 1503
FaqI GGGAC 3 cut(s) 100, 263, 1537
FatI CATG 4 cut(s) 25, 990, 1434, 1499
FblI GTMKAC 2 cut(s) 11, 1286
Fnu4HI GCNGC 9 cut(s) 80, 205, 385, 648, 651, 672, 963, 1448, 1505
Fsp4HI GCNGC 9 cut(s) 80, 205, 385, 648, 651, 672, 963, 1448, 1505
FspAI RTGCGCAY 1 cut(s) 323
FspBI CTAG 4 cut(s) 537, 1382, 1388, 1575
FspI TGCGCA 1 cut(s) 323
GlaI GCGC 1 cut(s) 323
GluI GCNGC 9 cut(s) 80, 205, 385, 648, 651, 672, 963, 1448, 1505
GsuI CTGGAG 2 cut(s) 1479, 1605
HaeIII GGCC 1 cut(s) 1370
HapII CCGG 1 cut(s) 762
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 324
Hin1II CATG 4 cut(s) 29, 994, 1438, 1503
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 1230
HindII GTYRAC 1 cut(s) 1230
HindIII AAGCTT 2 cut(s) 149, 734
HinfI GANTC 7 cut(s) 618, 826, 898, 1046, 1062, 1211, 1321
HpaI GTTAAC 1 cut(s) 1230
HpaII CCGG 1 cut(s) 762
HphI GGTGA 2 cut(s) 16, 235
Hpy166II GTNNAC 4 cut(s) 12, 352, 1230, 1287
Hpy188I TCNGA 5 cut(s) 617, 753, 853, 1043, 1223
Hpy188III TCNNGA 8 cut(s) 287, 740, 762, 823, 1027, 1388, 1458, 1640
Hpy8I GTNNAC 4 cut(s) 12, 352, 1230, 1287
HpyAV CCTTC 7 cut(s) 214, 429, 848, 937, 939, 983, 1546
HpyCH4III ACNGT 4 cut(s) 22, 374, 840, 1081
HpyCH4IV ACGT 2 cut(s) 358, 1308
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 680, 1367, 1489
HpyF3I CTNAG 3 cut(s) 114, 431, 1312
HpySE526I ACGT 2 cut(s) 358, 1308
Hsp92II CATG 4 cut(s) 29, 994, 1438, 1503
HspAI GCGC 1 cut(s) 322
Kpn2I TCCGGA 1 cut(s) 761
KspAI GTTAAC 1 cut(s) 1230
Kzo9I GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 8 cut(s) 66, 216, 634, 637, 658, 949, 1459, 1516
LweI GCATC 6 cut(s) 309, 333, 415, 848, 1060, 1429
MaeI CTAG 4 cut(s) 537, 1382, 1388, 1575
MaeII ACGT 2 cut(s) 358, 1308
MaeIII GTNAC 2 cut(s) 797, 1640
MalI GATC 9 cut(s) 68, 441, 516, 573, 750, 1338, 1433, 1579, 1638
MboI GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
MflI RGATCY 5 cut(s) 66, 439, 514, 571, 1577
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 9 cut(s) 531, 687, 702, 717, 728, 908, 1030, 1087, 1251
MlyI GAGTC 3 cut(s) 835, 1040, 1071
Mph1103I ATGCAT 1 cut(s) 1102
MroI TCCGGA 1 cut(s) 761
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 762
Mva1269I GAATGC 3 cut(s) 387, 1541, 1609
MwoI GCNNNNNNNGC 4 cut(s) 88, 680, 1367, 1489
NdeII GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
NlaIII CATG 4 cut(s) 29, 994, 1438, 1503
NlaIV GGNNCC 2 cut(s) 140, 573
NmuCI GTSAC 2 cut(s) 797, 1640
NsbI TGCGCA 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 119
PciI ACATGT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 2 cut(s) 586, 595
PctI GAATGC 3 cut(s) 387, 1541, 1609
PfeI GAWTC 4 cut(s) 618, 898, 1211, 1321
PkrI GCNGC 9 cut(s) 81, 206, 386, 649, 652, 673, 964, 1449, 1506
PleI GAGTC 3 cut(s) 834, 1040, 1070
PpsI GAGTC 3 cut(s) 834, 1040, 1070
PscI ACATGT 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 1086
PspN4I GGNNCC 2 cut(s) 140, 573
PspPI GGNCC 3 cut(s) 139, 1368, 1463
PstI CTGCAG 1 cut(s) 1531
PsuI RGATCY 5 cut(s) 66, 439, 514, 571, 1577
RsaI GTAC 5 cut(s) 24, 371, 881, 892, 1573
RsaNI GTAC 5 cut(s) 23, 370, 880, 891, 1572
SatI GCNGC 9 cut(s) 80, 205, 385, 648, 651, 672, 963, 1448, 1505
Sau3AI GATC 9 cut(s) 66, 439, 514, 571, 748, 1336, 1431, 1577, 1636
Sau96I GGNCC 3 cut(s) 139, 1368, 1463
ScaI AGTACT 1 cut(s) 1573
SchI GAGTC 3 cut(s) 835, 1040, 1071
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 6 cut(s) 309, 333, 415, 848, 1060, 1429
SfcI CTRYAG 1 cut(s) 1527
SinI GGWCC 2 cut(s) 139, 1463
SmlI CTYRAG 3 cut(s) 107, 823, 1541
SmoI CTYRAG 3 cut(s) 107, 823, 1541
Sse9I AATT 9 cut(s) 531, 687, 702, 717, 728, 908, 1030, 1087, 1251
SsiI CCGC 2 cut(s) 385, 575
SspMI CTAG 4 cut(s) 537, 1382, 1388, 1575
TaaI ACNGT 4 cut(s) 22, 374, 840, 1081
TaiI ACGT 2 cut(s) 361, 1311
TaqI TCGA 3 cut(s) 589, 627, 1205
TasI AATT 9 cut(s) 531, 687, 702, 717, 728, 908, 1030, 1087, 1251
TatI WGTACW 4 cut(s) 22, 369, 890, 1571
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 4 cut(s) 618, 898, 1211, 1321
TscAI CASTG 3 cut(s) 379, 435, 845
TseFI GTSAC 2 cut(s) 797, 1640
TseI GCWGC 8 cut(s) 79, 204, 647, 650, 671, 962, 1447, 1504
Tsp45I GTSAC 2 cut(s) 797, 1640
TspDTI ATGAA 5 cut(s) 66, 610, 645, 675, 821
TspGWI ACGGA 3 cut(s) 131, 587, 966
TspRI CASTG 3 cut(s) 379, 435, 845
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 139, 1463
VspI ATTAAT 1 cut(s) 1086
XapI RAATTY 1 cut(s) 728
XbaI TCTAGA 1 cut(s) 1387
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 11, 1286
XspI CTAG 4 cut(s) 537, 1382, 1388, 1575
ZrmI AGTACT 1 cut(s) 1573
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.