MD17G1116700.v1.1

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006929
Physical Location & Seq
Reverse (-)
10060740 .. 10061570
831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1116700.v1.1.491

Sequence Viewer

Length: 831 bp
ATGTCGTCGGTGTCTTTGAAAAAAATGAATAGTTCTAGAAGCAGCACTGTATCTGAACGGTGTTTTGATTACTCTGCTTCGGTTGACTGCAATATCTCATCTTCCACTAACAATGTCCCCTCCAGCACTGTATCTGCTTATCTCCGAAATATGCAGCGAGGAAGCCTTATTCAACCATTTGGTTGCTTGATTGTTGTTGATGAGAAAAACTTCGCTGTTCTTGCCTACAGTGCAAATGCCCCGGAAATGTTGGACTTGGCCCCTCATGCTGTTCCAAATATTGAGCAGCAACAAGCTTTGACTTTTGGAGCGGATGTGCAGACACTCTTTCGGTCCTCAGGTGCTGCTGCGTTGCAGAAAGCAGCCCATTTTGGGGAAGTGAATCTTCTCAATCCCATATTGGTGCATTCTAGAACCTCTAGTAAGCCCTTTTATGCAATTCTACATCGACTTGATGTTGGCTTAGTAATAGATTTGGAACCAGTAAGTCCATCTGATGTTCCAGTGACTGCTGCAGGAGCATTGAAATCTTATAAGCTTGCAGCCAAAGCCATCTCAAAATTGCAGTCTTTGCCAAGCGGGGATATATCATTGTTCTGTGATGTTATAGTTAAGGAAGTTGGTGATTTGACGGGTTATGATCGCATAATGGTGTATAAATTTCATGAAGGTGAACACGGGGAAGTTATCGCTGAGTGCCATAGACCTGACCTGGAACCTTATCTGGGTTTACATTTCCCAGCGACTGATATACCAAAGGCTTCCCAATTCTTATTTATGAGGAATAAGGTTAGGATGATATGTGATTGTTTAGCCGCTCCAGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

277

Amino Acids

29.98

Weight (kDa)

6.44

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 46 - 162 2.6e-36 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AccBSI CCGCTC 2 cut(s) 311, 818
AciI CCGC 3 cut(s) 311, 579, 816
AcsI RAATTY 1 cut(s) 659
AfiI CCNNNNNNNGG 3 cut(s) 372, 373, 725
AgsI TTSAA 3 cut(s) 19, 173, 526
AjnI CCWGG 1 cut(s) 711
AluBI AGCT 2 cut(s) 296, 538
AluI AGCT 2 cut(s) 296, 538
AlwNI CAGNNNCTG 3 cut(s) 344, 509, 746
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 8 cut(s) 42, 154, 286, 344, 347, 362, 512, 542
ApoI RAATTY 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 259, 333
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 635, 683
AvaII GGWCC 1 cut(s) 333
AxyI CCTNAGG 1 cut(s) 337
BbvI GCAGC 8 cut(s) 54, 166, 298, 331, 334, 374, 499, 554
BccI CCATC 2 cut(s) 499, 560
BciT130I CCWGG 1 cut(s) 713
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 3 cut(s) 36, 411, 420
BfmI CTRYAG 2 cut(s) 226, 513
BisI GCNGC 9 cut(s) 43, 155, 287, 345, 348, 363, 513, 543, 816
BlsI GCNGC 9 cut(s) 44, 156, 288, 346, 349, 364, 514, 544, 817
Bme1390I CCNGG 2 cut(s) 242, 713
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 259, 333
BmiI GGNNCC 3 cut(s) 261, 480, 717
BmrFI CCNGG 2 cut(s) 242, 713
BpmI CTGGAG 2 cut(s) 106, 804
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 373, 725
Bse1I ACTGG 3 cut(s) 482, 503, 821
Bse21I CCTNAGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 713
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 319, 801
BseLI CCNNNNNNNGG 3 cut(s) 372, 373, 725
BseMII CTCAG 2 cut(s) 351, 684
BseNI ACTGG 3 cut(s) 482, 503, 821
BseXI GCAGC 8 cut(s) 54, 166, 298, 331, 334, 374, 499, 554
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 372, 373, 725
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 3 cut(s) 311, 579, 816
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 350, 685
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 3 cut(s) 261, 480, 717
BspMAI CTGCAG 1 cut(s) 517
BsrBI CCGCTC 2 cut(s) 311, 818
BsrI ACTGG 3 cut(s) 482, 503, 821
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 713
Bst4CI ACNGT 4 cut(s) 49, 60, 130, 230
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 337, 463, 693
BstF5I GGATG 2 cut(s) 319, 801
BstKTI GATC 1 cut(s) 643
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 266, 518, 548, 571
BstNI CCWGG 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 240, 711
BstSFI CTRYAG 2 cut(s) 226, 513
BstV1I GCAGC 8 cut(s) 54, 166, 298, 331, 334, 374, 499, 554
Bsu36I CCTNAGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 2 cut(s) 319, 801
BtsIMutI CAGTG 4 cut(s) 45, 126, 235, 510
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 3 cut(s) 344, 509, 746
CciI TCATGA 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 259, 333
CviAII CATG 2 cut(s) 266, 665
DdeI CTNAG 3 cut(s) 337, 463, 693
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 711
FaeI CATG 2 cut(s) 269, 668
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 265, 664
FauI CCCGC 1 cut(s) 572
Fnu4HI GCNGC 9 cut(s) 43, 155, 287, 345, 348, 363, 513, 543, 816
FokI GGATG 2 cut(s) 326, 808
Fsp4HI GCNGC 9 cut(s) 43, 155, 287, 345, 348, 363, 513, 543, 816
FspBI CTAG 3 cut(s) 36, 411, 420
GluI GCNGC 9 cut(s) 43, 155, 287, 345, 348, 363, 513, 543, 816
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 2 cut(s) 106, 804
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 242
Hin1II CATG 2 cut(s) 269, 668
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 294, 536
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 635, 683
Hpy166II GTNNAC 3 cut(s) 85, 674, 731
Hpy188I TCNGA 3 cut(s) 55, 146, 496
Hpy188III TCNNGA 3 cut(s) 36, 411, 665
Hpy8I GTNNAC 3 cut(s) 85, 674, 731
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 4 cut(s) 49, 60, 130, 230
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 266, 518, 548, 571
HpyF3I CTNAG 3 cut(s) 337, 463, 693
Hsp92II CATG 2 cut(s) 269, 668
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 3 cut(s) 308, 518, 823
Lsp1109I GCAGC 8 cut(s) 54, 166, 298, 331, 334, 374, 499, 554
MaeI CTAG 3 cut(s) 36, 411, 420
MaeIII GTNAC 1 cut(s) 505
MalI GATC 1 cut(s) 642
MbiI CCGCTC 2 cut(s) 311, 818
MboI GATC 1 cut(s) 640
MboII GAAGA 2 cut(s) 93, 377
MluCI AATT 4 cut(s) 438, 560, 659, 767
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 6 cut(s) 130, 152, 273, 346, 427, 774
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 3 cut(s) 401, 650, 669
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 242, 713
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 713
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 266, 518, 548, 571
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 640
NlaIII CATG 2 cut(s) 269, 668
NlaIV GGNNCC 3 cut(s) 261, 480, 717
NmuCI GTSAC 1 cut(s) 505
PagI TCATGA 1 cut(s) 664
PctI GAATGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 9 cut(s) 44, 156, 288, 346, 349, 364, 514, 544, 817
PsiI TTATAA 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 711
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 711
PspN4I GGNNCC 3 cut(s) 261, 480, 717
PspPI GGNCC 2 cut(s) 259, 333
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 3 cut(s) 344, 509, 746
RseI CAYNNNNRTG 3 cut(s) 401, 650, 669
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 9 cut(s) 43, 155, 287, 345, 348, 363, 513, 543, 816
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 2 cut(s) 259, 333
ScrFI CCNGG 2 cut(s) 242, 713
SetI ASST 9 cut(s) 298, 343, 419, 540, 673, 709, 714, 721, 792
SfcI CTRYAG 2 cut(s) 226, 513
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 3 cut(s) 401, 650, 669
Sse9I AATT 4 cut(s) 438, 560, 659, 767
SsiI CCGC 3 cut(s) 311, 579, 816
SspI AATATT 1 cut(s) 280
SspMI CTAG 3 cut(s) 36, 411, 420
StyD4I CCNGG 2 cut(s) 240, 711
TaaI ACNGT 4 cut(s) 49, 60, 130, 230
TaqI TCGA 1 cut(s) 448
TaqII GACCGA 1 cut(s) 321
TasI AATT 4 cut(s) 438, 560, 659, 767
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 4 cut(s) 52, 133, 235, 510
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 8 cut(s) 42, 154, 286, 344, 347, 362, 512, 542
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 3 cut(s) 41, 653, 681
TspRI CASTG 4 cut(s) 52, 133, 235, 510
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 1 cut(s) 659
XbaI TCTAGA 2 cut(s) 35, 410
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 3 cut(s) 36, 411, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.