Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g19750 |
| malus_domestica | MD17G1116700.v1.1 |
| pyrus_communis | pycom04g16280 pycom10g22360 |
| rosa_chinensis | RchiOBHm_Chr2g0161111 |
| rosa_laevigata | RLG00000013469 RLG00000028069 |
| rosa_multiflora | Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001 |
| rosa_rugosa | Rorug04G0078700 |
| rosa_samantha | Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 246, 314 |
| AciI | CCGC | 2 cut(s) | 244, 398 |
| AcsI | RAATTY | 2 cut(s) | 4, 181 |
| AcuI | CTGAAG | 1 cut(s) | 591 |
| AfaI | GTAC | 1 cut(s) | 533 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 250 |
| AluBI | AGCT | 6 cut(s) | 219, 415, 439, 469, 505, 583 |
| AluI | AGCT | 6 cut(s) | 219, 415, 439, 469, 505, 583 |
| Alw21I | GWGCWC | 1 cut(s) | 585 |
| Alw26I | GTCTC | 1 cut(s) | 411 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 415, 448 |
| Ama87I | CYCGRG | 2 cut(s) | 249, 584 |
| AoxI | GGCC | 2 cut(s) | 176, 373 |
| ApaI | GGGCCC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 2 cut(s) | 436, 439 |
| ApoI | RAATTY | 2 cut(s) | 4, 181 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 239 |
| AspLEI | GCGC | 1 cut(s) | 248 |
| AspS9I | GGNCC | 3 cut(s) | 176, 373, 374 |
| AsuC2I | CCSGG | 1 cut(s) | 394 |
| AsuHPI | GGTGA | 1 cut(s) | 590 |
| AvaI | CYCGRG | 2 cut(s) | 249, 584 |
| BaeGI | GKGCMC | 1 cut(s) | 377 |
| BanII | GRGCYC | 2 cut(s) | 377, 585 |
| Bbv12I | GWGCWC | 1 cut(s) | 585 |
| BbvI | GCAGC | 2 cut(s) | 426, 448 |
| BciVI | GTATCC | 1 cut(s) | 273 |
| BcnI | CCSGG | 1 cut(s) | 394 |
| BcoDI | GTCTC | 1 cut(s) | 411 |
| BfaI | CTAG | 2 cut(s) | 230, 363 |
| BfmI | CTRYAG | 2 cut(s) | 387, 440 |
| BfuI | GTATCC | 1 cut(s) | 273 |
| BisI | GCNGC | 2 cut(s) | 437, 440 |
| BlsI | GCNGC | 2 cut(s) | 438, 441 |
| Bme1390I | CCNGG | 1 cut(s) | 394 |
| BmeT110I | CYCGRG | 2 cut(s) | 249, 584 |
| BmgT120I | GGNCC | 3 cut(s) | 176, 373, 374 |
| BmiI | GGNNCC | 2 cut(s) | 357, 375 |
| BmrFI | CCNGG | 1 cut(s) | 394 |
| BmrI | ACTGGG | 2 cut(s) | 447, 519 |
| BmsI | GCATC | 1 cut(s) | 48 |
| BmuI | ACTGGG | 2 cut(s) | 447, 519 |
| BpuMI | CCSGG | 1 cut(s) | 394 |
| BsaJI | CCNNGG | 2 cut(s) | 104, 393 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 521, 551 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 161, 162, 250 |
| Bse1I | ACTGG | 2 cut(s) | 453, 514 |
| BseDI | CCNNGG | 2 cut(s) | 104, 393 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 250 |
| BseMII | CTCAG | 1 cut(s) | 422 |
| BseNI | ACTGG | 2 cut(s) | 453, 514 |
| BseSI | GKGCMC | 1 cut(s) | 377 |
| BseXI | GCAGC | 2 cut(s) | 426, 448 |
| BsgI | GTGCAG | 1 cut(s) | 422 |
| Bsh1236I | CGCG | 2 cut(s) | 246, 314 |
| BshFI | GGCC | 2 cut(s) | 178, 375 |
| BsiHKAI | GWGCWC | 1 cut(s) | 585 |
| BsiHKCI | CYCGRG | 2 cut(s) | 249, 584 |
| BsiSI | CCGG | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 161, 162, 250 |
| BsmAI | GTCTC | 1 cut(s) | 411 |
| BsnI | GGCC | 2 cut(s) | 178, 375 |
| BsoBI | CYCGRG | 2 cut(s) | 249, 584 |
| Bsp120I | GGGCCC | 1 cut(s) | 373 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 585 |
| Bsp19I | CCATGG | 1 cut(s) | 104 |
| BspACI | CCGC | 2 cut(s) | 244, 398 |
| BspANI | GGCC | 2 cut(s) | 178, 375 |
| BspCNI | CTCAG | 1 cut(s) | 421 |
| BspFNI | CGCG | 2 cut(s) | 246, 314 |
| BspHI | TCATGA | 1 cut(s) | 541 |
| BspLI | GGNNCC | 2 cut(s) | 357, 375 |
| BspMAI | CTGCAG | 1 cut(s) | 444 |
| BspQI | GCTCTTC | 1 cut(s) | 209 |
| BsrI | ACTGG | 2 cut(s) | 453, 514 |
| BssECI | CCNNGG | 2 cut(s) | 104, 393 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 1 cut(s) | 306 |
| Bst6I | CTCTTC | 3 cut(s) | 63, 209, 267 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 448 |
| BstDEI | CTNAG | 1 cut(s) | 408 |
| BstDSI | CCRYGG | 1 cut(s) | 104 |
| BstFNI | CGCG | 2 cut(s) | 246, 314 |
| BstHHI | GCGC | 1 cut(s) | 248 |
| BstMAI | GTCTC | 1 cut(s) | 411 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 208, 245, 448 |
| BstSCI | CCNGG | 1 cut(s) | 392 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 440 |
| BstSLI | GKGCMC | 1 cut(s) | 377 |
| BstUI | CGCG | 2 cut(s) | 246, 314 |
| BstV1I | GCAGC | 2 cut(s) | 426, 448 |
| BsuI | GTATCC | 1 cut(s) | 273 |
| BsuRI | GGCC | 2 cut(s) | 178, 375 |
| BtgI | CCRYGG | 1 cut(s) | 104 |
| BtsI | GCAGTG | 1 cut(s) | 446 |
| BtsIMutI | CAGTG | 2 cut(s) | 446, 460 |
| CaiI | CAGNNNCTG | 2 cut(s) | 415, 448 |
| CciI | TCATGA | 1 cut(s) | 541 |
| CfoI | GCGC | 1 cut(s) | 248 |
| Cfr13I | GGNCC | 3 cut(s) | 176, 373, 374 |
| CseI | GACGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 532 |
| CviAII | CATG | 6 cut(s) | 105, 157, 481, 542, 554, 600 |
| CviQI | GTAC | 1 cut(s) | 532 |
| DdeI | CTNAG | 1 cut(s) | 408 |
| Eam1104I | CTCTTC | 3 cut(s) | 63, 209, 267 |
| EarI | CTCTTC | 3 cut(s) | 63, 209, 267 |
| Ecl136II | GAGCTC | 1 cut(s) | 583 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco24I | GRGCYC | 2 cut(s) | 377, 585 |
| Eco53kI | GAGCTC | 1 cut(s) | 583 |
| Eco57I | CTGAAG | 1 cut(s) | 591 |
| Eco88I | CYCGRG | 2 cut(s) | 249, 584 |
| EcoICRI | GAGCTC | 1 cut(s) | 583 |
| EcoO109I | RGGNCCY | 1 cut(s) | 373 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| EcoT38I | GRGCYC | 2 cut(s) | 377, 585 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 6 cut(s) | 108, 160, 484, 545, 557, 603 |
| FatI | CATG | 6 cut(s) | 104, 156, 480, 541, 553, 599 |
| Fnu4HI | GCNGC | 2 cut(s) | 437, 440 |
| FriOI | GRGCYC | 2 cut(s) | 377, 585 |
| Fsp4HI | GCNGC | 2 cut(s) | 437, 440 |
| FspBI | CTAG | 2 cut(s) | 230, 363 |
| GlaI | GCGC | 1 cut(s) | 247 |
| GluI | GCNGC | 2 cut(s) | 437, 440 |
| HaeIII | GGCC | 2 cut(s) | 178, 375 |
| HapII | CCGG | 1 cut(s) | 393 |
| HgaI | GACGC | 1 cut(s) | 208 |
| HhaI | GCGC | 1 cut(s) | 248 |
| Hin1II | CATG | 6 cut(s) | 108, 160, 484, 545, 557, 603 |
| Hin6I | GCGC | 1 cut(s) | 246 |
| HinP1I | GCGC | 1 cut(s) | 246 |
| HindIII | AAGCTT | 1 cut(s) | 467 |
| HinfI | GANTC | 1 cut(s) | 379 |
| HpaII | CCGG | 1 cut(s) | 393 |
| HphI | GGTGA | 1 cut(s) | 590 |
| Hpy188I | TCNGA | 3 cut(s) | 10, 298, 411 |
| Hpy188III | TCNNGA | 3 cut(s) | 251, 421, 542 |
| HpyAV | CCTTC | 3 cut(s) | 154, 222, 229 |
| HpyCH4III | ACNGT | 1 cut(s) | 306 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 322, 403, 442 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 208, 245, 448 |
| HpyF3I | CTNAG | 1 cut(s) | 408 |
| Hsp92II | CATG | 6 cut(s) | 108, 160, 484, 545, 557, 603 |
| HspAI | GCGC | 1 cut(s) | 246 |
| LguI | GCTCTTC | 1 cut(s) | 209 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| LpnPI | CCDG | 5 cut(s) | 229, 401, 406, 466, 495 |
| Lsp1109I | GCAGC | 2 cut(s) | 426, 448 |
| LweI | GCATC | 1 cut(s) | 48 |
| MaeI | CTAG | 2 cut(s) | 230, 363 |
| MaeIII | GTNAC | 2 cut(s) | 444, 476 |
| MboII | GAAGA | 9 cut(s) | 59, 77, 80, 85, 95, 196, 254, 557, 584 |
| MhlI | GDGCHC | 2 cut(s) | 377, 585 |
| MluCI | AATT | 3 cut(s) | 4, 181, 273 |
| MlyI | GAGTC | 1 cut(s) | 373 |
| MmeI | TCCRAC | 2 cut(s) | 175, 321 |
| MnlI | CCTC | 9 cut(s) | 22, 73, 159, 182, 282, 364, 369, 417, 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 239 |
| MseI | TTAA | 1 cut(s) | 465 |
| MslI | CAYNNNNRTG | 2 cut(s) | 485, 546 |
| MspA1I | CMGCKG | 1 cut(s) | 439 |
| MspI | CCGG | 1 cut(s) | 393 |
| MspR9I | CCNGG | 1 cut(s) | 394 |
| MvnI | CGCG | 2 cut(s) | 246, 314 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 208, 245, 448 |
| NciI | CCSGG | 1 cut(s) | 394 |
| NcoI | CCATGG | 1 cut(s) | 104 |
| NlaIII | CATG | 6 cut(s) | 108, 160, 484, 545, 557, 603 |
| NlaIV | GGNNCC | 2 cut(s) | 357, 375 |
| NmuCI | GTSAC | 2 cut(s) | 444, 476 |
| PagI | TCATGA | 1 cut(s) | 541 |
| PciSI | GCTCTTC | 1 cut(s) | 209 |
| PdmI | GAANNNNTTC | 1 cut(s) | 239 |
| PflFI | GACNNNGTC | 1 cut(s) | 382 |
| PkrI | GCNGC | 2 cut(s) | 438, 441 |
| PleI | GAGTC | 1 cut(s) | 373 |
| PpsI | GAGTC | 1 cut(s) | 373 |
| Psp124BI | GAGCTC | 1 cut(s) | 585 |
| PspN4I | GGNNCC | 2 cut(s) | 357, 375 |
| PspOMI | GGGCCC | 1 cut(s) | 373 |
| PspPI | GGNCC | 3 cut(s) | 176, 373, 374 |
| PstI | CTGCAG | 1 cut(s) | 444 |
| PstNI | CAGNNNCTG | 2 cut(s) | 415, 448 |
| PsyI | GACNNNGTC | 1 cut(s) | 382 |
| PvuII | CAGCTG | 1 cut(s) | 439 |
| RsaI | GTAC | 1 cut(s) | 533 |
| RsaNI | GTAC | 1 cut(s) | 532 |
| RseI | CAYNNNNRTG | 2 cut(s) | 485, 546 |
| SacI | GAGCTC | 1 cut(s) | 585 |
| SapI | GCTCTTC | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 465 |
| SatI | GCNGC | 2 cut(s) | 437, 440 |
| Sau96I | GGNCC | 3 cut(s) | 176, 373, 374 |
| SchI | GAGTC | 1 cut(s) | 373 |
| ScrFI | CCNGG | 1 cut(s) | 394 |
| SduI | GDGCHC | 2 cut(s) | 377, 585 |
| SetI | ASST | 7 cut(s) | 221, 417, 441, 471, 507, 564, 585 |
| SfaNI | GCATC | 1 cut(s) | 48 |
| SfcI | CTRYAG | 2 cut(s) | 387, 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 485, 546 |
| Sse9I | AATT | 3 cut(s) | 4, 181, 273 |
| SsiI | CCGC | 2 cut(s) | 244, 398 |
| SspMI | CTAG | 2 cut(s) | 230, 363 |
| SstI | GAGCTC | 1 cut(s) | 585 |
| StyD4I | CCNGG | 1 cut(s) | 392 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaaI | ACNGT | 1 cut(s) | 306 |
| TaqI | TCGA | 1 cut(s) | 287 |
| TasI | AATT | 3 cut(s) | 4, 181, 273 |
| TatI | WGTACW | 1 cut(s) | 531 |
| Tru1I | TTAA | 1 cut(s) | 465 |
| Tru9I | TTAA | 1 cut(s) | 465 |
| TscAI | CASTG | 2 cut(s) | 453, 460 |
| TseFI | GTSAC | 2 cut(s) | 444, 476 |
| TseI | GCWGC | 2 cut(s) | 436, 439 |
| Tsp45I | GTSAC | 2 cut(s) | 444, 476 |
| TspDTI | ATGAA | 4 cut(s) | 17, 173, 530, 558 |
| TspRI | CASTG | 2 cut(s) | 453, 460 |
| Tth111I | GACNNNGTC | 1 cut(s) | 382 |
| XapI | RAATTY | 2 cut(s) | 4, 181 |
| XmnI | GAANNNNTTC | 1 cut(s) | 239 |
| XspI | CTAG | 2 cut(s) | 230, 363 |