Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011620.1

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Forward (+)

6795 .. 10052

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011620.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggacatgttggccttttgggttcattggctgtgtcttgggacaagagtatcggaggtgatgggaggggagatcaaggaggttggcaagttgtggttccgtccttgttggccgagtttgggatcatagtggattggtactgcggttggaccgacatggttgcagggtcagaggtttggagcgggtggaggggaagatatttcagaaaattgttcgctctaaatgcttcgtctcaagagttgacgtttgtacgtttggactctgtaaaaacttccttcacgaaacttgtagagcgcgtcaatatgagttcgggcatgtgtgaaactcaaaaatcggaagtttccaaaattggaaactcggtttctctctccctcccccgaacccgcgttggccctccaccaacgctggcttcgttcttcacccttcggccacctcaggatgtgattcttgagtggttttgctcgtctcatcatcctctaaacgtctgtggaagccatcgagcacgggaagggctatccctctctctcttcttcggtgacaattgcggtggttcggtgacaattgcagcaaattacgacttacctgtccaaattccagaggggctgccatatccagccattcgggtgcacgattgcggtggaagagtccaccttcgggatcattgcctacagcgagaacgcccgggacctgctcgacatgatgccctagtcggttccggtgctcgagaggtgggagatcctcacaatcgggatcaacgtcaggacgctcttcactccttccagctcaattttgctggagaaggctttccacgctcgggagattactcttctcaacccaatttggatatattcgagggtttccggcaatctcagaagctggctgtgagggcgatttcgcagctgcagtcactgctcggtagggatattaagcttttgtgtgacatggtggtggagagtgtgagggagcttactgggtatgatggagttatggagtacaagtttcatgaggatgagcacggggaggttttggctgaagtggttaagctcgggcttcttctcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

354

Amino Acids

39.03

Weight (kDa)

6.06

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	183
AccII	CGCG	2 cut(s)	297, 387
AciI	CCGC	5 cut(s)	144, 183, 385, 546, 636
AclWI	GGATC	4 cut(s)	131, 666, 731, 759
AcoI	YGGCCR	2 cut(s)	111, 428
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	3 cut(s)	140, 252, 995
AfiI	CCNNNNNNNGG	3 cut(s)	120, 655, 815
AflIII	ACRYGT	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	6 cut(s)	784, 877, 901, 931, 967, 1045
AluI	AGCT	6 cut(s)	784, 877, 901, 931, 967, 1045
Alw21I	GWGCWC	4 cut(s)	505, 630, 724, 1017
Alw26I	GTCTC	2 cut(s)	237, 471
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	4 cut(s)	131, 666, 731, 759
AlwNI	CAGNNNCTG	2 cut(s)	877, 910
Ama87I	CYCGRG	4 cut(s)	682, 723, 814, 1046
AoxI	GGCC	4 cut(s)	13, 111, 391, 428
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	4 cut(s)	566, 604, 898, 901
ApoI	RAATTY	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	3 cut(s)	150, 392, 686
AsuC2I	CCSGG	2 cut(s)	683, 684
AsuHPI	GGTGA	4 cut(s)	71, 412, 548, 568
AvaI	CYCGRG	4 cut(s)	682, 723, 814, 1046
AvaII	GGWCC	2 cut(s)	150, 686
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	630
BaeI	ACNNNNGTAYC	4 cut(s)	34, 67, 130, 163
Bbv12I	GWGCWC	4 cut(s)	505, 630, 724, 1017
BbvI	GCAGC	4 cut(s)	578, 591, 888, 910
BccI	CCATC	3 cut(s)	56, 504, 974
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BcnI	CCSGG	2 cut(s)	683, 684
BcoDI	GTCTC	2 cut(s)	237, 471
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	2 cut(s)	668, 902
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	4 cut(s)	567, 605, 899, 902
BlsI	GCNGC	4 cut(s)	568, 606, 900, 903
Bme1390I	CCNGG	2 cut(s)	683, 684
Bme18I	GGWCC	2 cut(s)	150, 686
BmeT110I	CYCGRG	4 cut(s)	682, 723, 814, 1046
BmgT120I	GGNCC	3 cut(s)	150, 392, 686
BmiI	GGNNCC	3 cut(s)	99, 687, 715
BmrFI	CCNGG	2 cut(s)	683, 684
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	1 cut(s)	691
BmuI	ACTGGG	1 cut(s)	981
BpmI	CTGGAG	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	219, 470
BpuMI	CCSGG	2 cut(s)	683, 684
BsaJI	CCNNGG	1 cut(s)	682
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 655, 815
Bse1I	ACTGG	1 cut(s)	976
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	3 cut(s)	445, 472, 1015
BseLI	CCNNNNNNNGG	3 cut(s)	120, 655, 815
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	449, 884
BseNI	ACTGG	1 cut(s)	976
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	4 cut(s)	578, 591, 888, 910
Bsh1236I	CGCG	2 cut(s)	297, 387
BshFI	GGCC	4 cut(s)	15, 113, 393, 430
BsiHKAI	GWGCWC	4 cut(s)	505, 630, 724, 1017
BsiHKCI	CYCGRG	4 cut(s)	682, 723, 814, 1046
BsiSI	CCGG	3 cut(s)	683, 717, 862
BslFI	GGGAC	3 cut(s)	18, 56, 699
BslI	CCNNNNNNNGG	3 cut(s)	120, 655, 815
BsmAI	GTCTC	2 cut(s)	237, 471
BsmBI	CGTCTC	2 cut(s)	237, 471
BsmFI	GGGAC	3 cut(s)	18, 56, 699
BsnI	GGCC	4 cut(s)	15, 113, 393, 430
BsoBI	CYCGRG	4 cut(s)	682, 723, 814, 1046
Bsp1286I	GDGCHC	4 cut(s)	505, 630, 724, 1017
Bsp143I	GATC	5 cut(s)	73, 123, 658, 736, 751
BspACI	CCGC	5 cut(s)	144, 183, 385, 546, 636
BspANI	GGCC	4 cut(s)	15, 113, 393, 430
BspCNI	CTCAG	2 cut(s)	448, 883
BspFNI	CGCG	2 cut(s)	297, 387
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	3 cut(s)	99, 687, 715
BspMAI	CTGCAG	1 cut(s)	906
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	4 cut(s)	131, 666, 731, 759
BspQI	GCTCTTC	1 cut(s)	774
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	976
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	5 cut(s)	73, 123, 658, 736, 751
Bst6I	CTCTTC	4 cut(s)	533, 637, 774, 832
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	2 cut(s)	408, 879
BstDEI	CTNAG	2 cut(s)	435, 870
BstF5I	GGATG	3 cut(s)	445, 472, 1015
BstFNI	CGCG	2 cut(s)	297, 387
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	76, 126, 661, 739, 754
BstMAI	GTCTC	2 cut(s)	237, 471
BstMBI	GATC	5 cut(s)	73, 123, 658, 736, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 810, 887, 910
BstNSI	RCATGY	2 cut(s)	11, 319
BstSCI	CCNGG	2 cut(s)	681, 682
BstSFI	CTRYAG	2 cut(s)	668, 902
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	2 cut(s)	297, 387
BstV1I	GCAGC	4 cut(s)	578, 591, 888, 910
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	15, 113, 393, 430
BtsCI	GGATG	3 cut(s)	445, 472, 1015
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	1 cut(s)	908
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	408, 879
CaiI	CAGNNNCTG	2 cut(s)	877, 910
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	150, 392, 686
Cfr9I	CCCGGG	1 cut(s)	682
CseI	GACGC	2 cut(s)	286, 773
Csp6I	GTAC	3 cut(s)	139, 251, 994
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	7 cut(s)	8, 157, 316, 698, 943, 1004, 1062
CviQI	GTAC	3 cut(s)	139, 251, 994
DdeI	CTNAG	2 cut(s)	435, 870
DpnI	GATC	5 cut(s)	75, 125, 660, 738, 753
DpnII	GATC	5 cut(s)	73, 123, 658, 736, 751
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	2 cut(s)	111, 428
Eam1104I	CTCTTC	4 cut(s)	533, 637, 774, 832
EarI	CTCTTC	4 cut(s)	533, 637, 774, 832
Eco47I	GGWCC	2 cut(s)	150, 686
Eco57I	CTGAAG	1 cut(s)	1053
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	4 cut(s)	682, 723, 814, 1046
EcoO109I	RGGNCCY	1 cut(s)	686
Esp3I	CGTCTC	2 cut(s)	237, 471
FaeI	CATG	7 cut(s)	11, 160, 319, 701, 946, 1007, 1065
FaqI	GGGAC	3 cut(s)	18, 56, 699
FatI	CATG	7 cut(s)	7, 156, 315, 697, 942, 1003, 1061
FauI	CCCGC	2 cut(s)	176, 392
Fnu4HI	GCNGC	4 cut(s)	567, 605, 899, 902
FokI	GGATG	3 cut(s)	452, 459, 1022
Fsp4HI	GCNGC	4 cut(s)	567, 605, 899, 902
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	4 cut(s)	567, 605, 899, 902
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	4 cut(s)	15, 113, 393, 430
HapII	CCGG	3 cut(s)	683, 717, 862
HgaI	GACGC	2 cut(s)	286, 773
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	11, 160, 319, 701, 946, 1007, 1065
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	3 cut(s)	260, 445, 645
HpaII	CCGG	3 cut(s)	683, 717, 862
HphI	GGTGA	4 cut(s)	71, 412, 548, 568
Hpy166II	GTNNAC	3 cut(s)	243, 628, 649
Hpy188I	TCNGA	5 cut(s)	56, 172, 206, 337, 873
Hpy8I	GTNNAC	3 cut(s)	243, 628, 649
HpyAV	CCTTC	6 cut(s)	286, 434, 503, 662, 787, 794
HpyCH4IV	ACGT	4 cut(s)	245, 253, 483, 757
HpyCH4V	TGCA	4 cut(s)	164, 566, 628, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 810, 887, 910
HpyF3I	CTNAG	2 cut(s)	435, 870
HpySE526I	ACGT	4 cut(s)	245, 253, 483, 757
Hsp92II	CATG	7 cut(s)	11, 160, 319, 701, 946, 1007, 1065
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	73, 123, 658, 736, 751
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	2 cut(s)	180, 964
Lsp1109I	GCAGC	4 cut(s)	578, 591, 888, 910
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	4 cut(s)	245, 253, 483, 757
MaeIII	GTNAC	4 cut(s)	536, 556, 906, 938
MalI	GATC	5 cut(s)	75, 125, 660, 738, 753
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	5 cut(s)	73, 123, 658, 736, 751
MboII	GAAGA	8 cut(s)	207, 409, 520, 523, 654, 761, 819, 1046
MfeI	CAATTG	2 cut(s)	541, 561
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	4 cut(s)	505, 630, 724, 1017
MluCI	AATT	8 cut(s)	209, 348, 541, 561, 571, 591, 787, 838
MlyI	GAGTC	2 cut(s)	254, 654
MmeI	TCCRAC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	804
MseI	TTAA	2 cut(s)	927, 1041
MslI	CAYNNNNRTG	3 cut(s)	623, 947, 1008
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	3 cut(s)	683, 717, 862
MspR9I	CCNGG	2 cut(s)	683, 684
MunI	CAATTG	2 cut(s)	541, 561
MvnI	CGCG	2 cut(s)	297, 387
MwoI	GCNNNNNNNGC	4 cut(s)	224, 810, 887, 910
NciI	CCSGG	2 cut(s)	683, 684
NdeII	GATC	5 cut(s)	73, 123, 658, 736, 751
NlaIII	CATG	7 cut(s)	11, 160, 319, 701, 946, 1007, 1065
NlaIV	GGNNCC	3 cut(s)	99, 687, 715
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	4 cut(s)	536, 556, 906, 938
NspI	RCATGY	2 cut(s)	11, 319
PaeR7I	CTCGAG	1 cut(s)	723
PagI	TCATGA	1 cut(s)	1003
PciI	ACATGT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	2 cut(s)	410, 754
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	568, 606, 900, 903
PleI	GAGTC	2 cut(s)	254, 653
PpsI	GAGTC	2 cut(s)	254, 653
PpuMI	RGGWCCY	1 cut(s)	686
PscI	ACATGT	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	686
PspN4I	GGNNCC	3 cut(s)	99, 687, 715
PspPI	GGNCC	3 cut(s)	150, 392, 686
PspPPI	RGGWCCY	1 cut(s)	686
PstI	CTGCAG	1 cut(s)	906
PstNI	CAGNNNCTG	2 cut(s)	877, 910
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	3 cut(s)	140, 252, 995
RsaNI	GTAC	3 cut(s)	139, 251, 994
RseI	CAYNNNNRTG	3 cut(s)	623, 947, 1008
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	927, 1041
SatI	GCNGC	4 cut(s)	567, 605, 899, 902
Sau3AI	GATC	5 cut(s)	73, 123, 658, 736, 751
Sau96I	GGNCC	3 cut(s)	150, 392, 686
SchI	GAGTC	2 cut(s)	254, 654
ScrFI	CCNGG	2 cut(s)	683, 684
SduI	GDGCHC	4 cut(s)	505, 630, 724, 1017
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	668, 902
Sfr274I	CTCGAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	150, 686
SlaI	CTCGAG	1 cut(s)	723
SmaI	CCCGGG	1 cut(s)	684
SmiMI	CAYNNNNRTG	3 cut(s)	623, 947, 1008
SmlI	CTYRAG	3 cut(s)	234, 449, 723
SmoI	CTYRAG	3 cut(s)	234, 449, 723
Sse9I	AATT	8 cut(s)	209, 348, 541, 561, 571, 591, 787, 838
SsiI	CCGC	5 cut(s)	144, 183, 385, 546, 636
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	681, 682
TaiI	ACGT	4 cut(s)	248, 256, 486, 760
TaqI	TCGA	4 cut(s)	499, 694, 724, 852
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	8 cut(s)	209, 348, 541, 561, 571, 591, 787, 838
TatI	WGTACW	1 cut(s)	993
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	927, 1041
Tru9I	TTAA	2 cut(s)	927, 1041
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	4 cut(s)	536, 556, 906, 938
TseI	GCWGC	4 cut(s)	566, 604, 898, 901
Tsp45I	GTSAC	4 cut(s)	536, 556, 906, 938
TspDTI	ATGAA	2 cut(s)	15, 992
TspGWI	ACGGA	1 cut(s)	90
TspMI	CCCGGG	1 cut(s)	682
TspRI	CASTG	1 cut(s)	915
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	150, 686
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	2 cut(s)	11, 319
XhoI	CTCGAG	1 cut(s)	723
XmaI	CCCGGG	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.