Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004343.1

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Forward (+)

70160 .. 71134

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004343.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtcgtcttcaagacccagtcactcatccagcaattcagggagatcaaggcacactgctagagttattgctcagacaactgtagatgcaaagcttcatgcagattttgaggagtcgggcagttcctttgactactcgagctcagtgcgtgttagcagttcagttgctggggatcaacaacctaggtctgacaaagtgaccactgcttatctccatcacatacagaaagggaagttgatccagccatttggctgcttgctagccttagatgacaaaactttcagggtcattgcatacagtgagaatgcccctgaaatgctgactatggttagtcatgccgtcccaagtgttggggaccacccagttcttggcataggaacagatgtgagaacaattttcacaggccctagtgcctctgcattgcataaggccctcgggttcggggaggtttctctcttaaatcccatcttagtccattgcaagtcatctggaaagcctttctatgctatagtccaccgggtaacaggtagcctggtcattgattttgaaccggtgaagccttatgaagtccccatgactgctgctggagctctgcaatcatacaaacttgcagccaaagcaattgcacgattgcagtctttgcctagtgggagcctggagaggctttgtgatacaatggttcaagaggtttttgagctcactggttatgacagggtgatggcctataaatttcatgatgatgatcatggggaagttattgcagagcttacgaagcctggcctggagccatatctgggtttgcattatccatccactgatatacctcaagcttcacggttcctgtttatgaagaataaggtccgtatgattgttgactgtcgtgctaaaaatgtcaaggtccttcaagatgagaagcttcctttggaatttcttggatgtcgttgggtggacccagttgggaattttgctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

7.22

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	350, 368
AclWI	GGATC	2 cut(s)	180, 232
AcsI	RAATTY	3 cut(s)	728, 926, 961
AfiI	CCNNNNNNNGG	3 cut(s)	350, 368, 794
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	12, 548, 683, 905
AjnI	CCWGG	4 cut(s)	531, 654, 775, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	7 cut(s)	94, 141, 590, 697, 766, 830, 916
AluI	AGCT	7 cut(s)	94, 141, 590, 697, 766, 830, 916
Alw21I	GWGCWC	3 cut(s)	143, 592, 699
AlwI	GGATC	2 cut(s)	180, 232
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	136, 434
AoxI	GGCC	4 cut(s)	403, 429, 720, 778
ApeKI	GCWGC	3 cut(s)	252, 581, 611
ApoI	RAATTY	3 cut(s)	728, 926, 961
AsiGI	ACCGGT	1 cut(s)	550
AspA2I	CCTAGG	1 cut(s)	182
AspS9I	GGNCC	6 cut(s)	355, 404, 430, 859, 898, 949
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	565, 727
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	2 cut(s)	136, 434
AvaII	GGWCC	4 cut(s)	355, 859, 898, 949
AvrII	CCTAGG	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BanII	GRGCYC	3 cut(s)	143, 592, 699
Bbv12I	GWGCWC	3 cut(s)	143, 592, 699
BbvI	GCAGC	3 cut(s)	239, 568, 623
BccI	CCATC	4 cut(s)	222, 473, 712, 817
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	4 cut(s)	533, 656, 777, 782
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	518
BfaI	CTAG	5 cut(s)	60, 183, 260, 408, 645
BfmI	CTRYAG	2 cut(s)	81, 507
BisI	GCNGC	3 cut(s)	253, 582, 612
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	3 cut(s)	254, 583, 613
Bme1390I	CCNGG	5 cut(s)	518, 533, 656, 777, 782
Bme18I	GGWCC	4 cut(s)	355, 859, 898, 949
BmeT110I	CYCGRG	2 cut(s)	136, 434
BmgT120I	GGNCC	6 cut(s)	355, 404, 430, 859, 898, 949
BmiI	GGNNCC	5 cut(s)	356, 653, 786, 839, 951
BmrFI	CCNGG	5 cut(s)	518, 533, 656, 777, 782
BmrI	ACTGGG	3 cut(s)	12, 356, 947
BmsI	GCATC	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	263
BmuI	ACTGGG	3 cut(s)	12, 356, 947
BpmI	CTGGAG	3 cut(s)	606, 677, 803
BpuEI	CTTGAG	1 cut(s)	810
BpuMI	CCSGG	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	182, 433
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 368, 794
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	4 cut(s)	18, 362, 706, 953
Bse3DI	GCAATG	3 cut(s)	288, 419, 475
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	4 cut(s)	533, 656, 777, 782
BseDI	CCNNGG	2 cut(s)	182, 433
BseGI	GGATG	3 cut(s)	26, 809, 941
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	350, 368, 794
BseMI	GCAATG	3 cut(s)	288, 419, 475
BseMII	CTCAG	2 cut(s)	86, 156
BseNI	ACTGG	4 cut(s)	18, 362, 706, 953
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	239, 568, 623
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	4 cut(s)	405, 431, 722, 780
BshTI	ACCGGT	1 cut(s)	550
BsiHKAI	GWGCWC	3 cut(s)	143, 592, 699
BsiHKCI	CYCGRG	2 cut(s)	136, 434
BsiSI	CCGG	2 cut(s)	517, 551
BslFI	GGGAC	3 cut(s)	326, 368, 554
BslI	CCNNNNNNNGG	3 cut(s)	350, 368, 794
BsmFI	GGGAC	3 cut(s)	326, 368, 554
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	4 cut(s)	405, 431, 722, 780
BsoBI	CYCGRG	2 cut(s)	136, 434
Bsp1286I	GDGCHC	3 cut(s)	143, 592, 699
Bsp143I	GATC	4 cut(s)	44, 172, 237, 742
BspANI	GGCC	4 cut(s)	405, 431, 722, 780
BspCNI	CTCAG	2 cut(s)	85, 155
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	5 cut(s)	356, 653, 786, 839, 951
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	180, 232
BsrDI	GCAATG	3 cut(s)	288, 419, 475
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	4 cut(s)	18, 362, 706, 953
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	182, 433
BssMI	GATC	4 cut(s)	44, 172, 237, 742
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	4 cut(s)	533, 656, 777, 782
Bst4CI	ACNGT	4 cut(s)	82, 299, 837, 878
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	257, 261
BstDEI	CTNAG	4 cut(s)	72, 142, 265, 469
BstF5I	GGATG	3 cut(s)	26, 809, 941
BstKTI	GATC	4 cut(s)	47, 175, 240, 745
BstMBI	GATC	4 cut(s)	44, 172, 237, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 617, 640, 772
BstNI	CCWGG	4 cut(s)	533, 656, 777, 782
BstSCI	CCNGG	5 cut(s)	516, 531, 654, 775, 780
BstSFI	CTRYAG	2 cut(s)	81, 507
BstV1I	GCAGC	3 cut(s)	239, 568, 623
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	405, 431, 722, 780
BtsCI	GGATG	3 cut(s)	26, 809, 941
BtsI	GCAGTG	2 cut(s)	54, 201
BtsIMutI	CAGTG	6 cut(s)	54, 150, 201, 304, 699, 813
Cac8I	GCNNGC	2 cut(s)	257, 261
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	6 cut(s)	355, 404, 430, 859, 898, 949
CspAI	ACCGGT	1 cut(s)	550
CviAII	CATG	5 cut(s)	98, 335, 574, 734, 746
DdeI	CTNAG	4 cut(s)	72, 142, 265, 469
DpnI	GATC	4 cut(s)	46, 174, 239, 744
DpnII	GATC	4 cut(s)	44, 172, 237, 742
Ecl136II	GAGCTC	3 cut(s)	141, 590, 697
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	3 cut(s)	143, 592, 699
Eco47I	GGWCC	4 cut(s)	355, 859, 898, 949
Eco53kI	GAGCTC	3 cut(s)	141, 590, 697
Eco88I	CYCGRG	2 cut(s)	136, 434
EcoICRI	GAGCTC	3 cut(s)	141, 590, 697
EcoO109I	RGGNCCY	3 cut(s)	404, 430, 898
EcoRII	CCWGG	4 cut(s)	531, 654, 775, 780
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	3 cut(s)	143, 592, 699
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	5 cut(s)	101, 338, 577, 737, 749
FaqI	GGGAC	3 cut(s)	326, 368, 554
FatI	CATG	5 cut(s)	97, 334, 573, 733, 745
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	253, 582, 612
FokI	GGATG	3 cut(s)	13, 796, 948
FriOI	GRGCYC	3 cut(s)	143, 592, 699
Fsp4HI	GCNGC	3 cut(s)	253, 582, 612
FspBI	CTAG	5 cut(s)	60, 183, 260, 408, 645
GluI	GCNGC	3 cut(s)	253, 582, 612
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	3 cut(s)	606, 677, 803
HaeIII	GGCC	4 cut(s)	405, 431, 722, 780
HapII	CCGG	2 cut(s)	517, 551
Hin1II	CATG	5 cut(s)	101, 338, 577, 737, 749
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	3 cut(s)	92, 828, 914
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	2 cut(s)	517, 551
HphI	GGTGA	2 cut(s)	565, 727
Hpy166II	GTNNAC	3 cut(s)	514, 874, 949
Hpy188I	TCNGA	2 cut(s)	75, 190
Hpy188III	TCNNGA	5 cut(s)	12, 489, 683, 734, 905
Hpy8I	GTNNAC	3 cut(s)	514, 874, 949
HpyAV	CCTTC	1 cut(s)	911
HpyCH4III	ACNGT	4 cut(s)	82, 299, 837, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 617, 640, 772
HpyF3I	CTNAG	4 cut(s)	72, 142, 265, 469
Hsp92II	CATG	5 cut(s)	101, 338, 577, 737, 749
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	44, 172, 237, 742
LmnI	GCTCC	3 cut(s)	587, 651, 784
Lsp1109I	GCAGC	3 cut(s)	239, 568, 623
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	5 cut(s)	60, 183, 260, 408, 645
MaeIII	GTNAC	3 cut(s)	20, 196, 520
MalI	GATC	4 cut(s)	46, 174, 239, 744
MboI	GATC	4 cut(s)	44, 172, 237, 742
MboII	GAAGA	1 cut(s)	862
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	3 cut(s)	143, 592, 699
MluCI	AATT	6 cut(s)	34, 393, 621, 728, 926, 961
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	103, 424, 439, 443, 654, 679, 834
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	738
MspI	CCGG	2 cut(s)	517, 551
MspR9I	CCNGG	5 cut(s)	518, 533, 656, 777, 782
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	4 cut(s)	533, 656, 777, 782
MwoI	GCNNNNNNNGC	4 cut(s)	587, 617, 640, 772
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	44, 172, 237, 742
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	101, 338, 577, 737, 749
NlaIV	GGNNCC	5 cut(s)	356, 653, 786, 839, 951
NmuCI	GTSAC	2 cut(s)	20, 196
PaeR7I	CTCGAG	1 cut(s)	136
PagI	TCATGA	1 cut(s)	733
PctI	GAATGC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	2 cut(s)	350, 368
PinAI	ACCGGT	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	254, 583, 613
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	898
Psp124BI	GAGCTC	3 cut(s)	143, 592, 699
Psp5II	RGGWCCY	1 cut(s)	898
Psp6I	CCWGG	4 cut(s)	531, 654, 775, 780
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	4 cut(s)	531, 654, 775, 780
PspN4I	GGNNCC	5 cut(s)	356, 653, 786, 839, 951
PspPI	GGNCC	6 cut(s)	355, 404, 430, 859, 898, 949
PspPPI	RGGWCCY	1 cut(s)	898
PspXI	VCTCGAGB	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	738
SacI	GAGCTC	3 cut(s)	143, 592, 699
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	253, 582, 612
Sau3AI	GATC	4 cut(s)	44, 172, 237, 742
Sau96I	GGNCC	6 cut(s)	355, 404, 430, 859, 898, 949
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	5 cut(s)	518, 533, 656, 777, 782
SduI	GDGCHC	3 cut(s)	143, 592, 699
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	81, 507
Sfr274I	CTCGAG	1 cut(s)	136
SinI	GGWCC	4 cut(s)	355, 859, 898, 949
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	136, 825
SmoI	CTYRAG	2 cut(s)	136, 825
Sse9I	AATT	6 cut(s)	34, 393, 621, 728, 926, 961
SspMI	CTAG	5 cut(s)	60, 183, 260, 408, 645
SstI	GAGCTC	3 cut(s)	143, 592, 699
StyD4I	CCNGG	5 cut(s)	516, 531, 654, 775, 780
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	82, 299, 837, 878
TaqI	TCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	34, 393, 621, 728, 926, 961
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	6 cut(s)	61, 150, 208, 304, 706, 820
TseFI	GTSAC	2 cut(s)	20, 196
TseI	GCWGC	3 cut(s)	252, 581, 611
Tsp45I	GTSAC	2 cut(s)	20, 196
TspDTI	ATGAA	4 cut(s)	86, 579, 722, 863
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	6 cut(s)	61, 150, 208, 304, 706, 820
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	2 cut(s)	350, 368
VpaK11BI	GGWCC	4 cut(s)	355, 859, 898, 949
XapI	RAATTY	3 cut(s)	728, 926, 961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	5 cut(s)	60, 183, 260, 408, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.