RchiOBHm_Chr2g0161111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006929
Physical Location & Seq
Reverse (-)
76986193 .. 76987379
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52947

Sequence Viewer

Length: 312 bp
ATGGTTCTAAGTAATTTTGGGAAAAATAAGGCTTTAGCGGCGATCCTAAAGTTCTTGATTGTGCAATTTGTGAAAGTACCCTCAATCCCCGGACTGAACGATCCCTGCTTATCCTATACTAACAATTGTCTTTTGCAGGGTAATTTTGTGCGCTTAATTCAGGCGTATCACATCCCAGTACGATCAGTTTTTAGATTTAATCAACTTTTGACGATTTTGTTTCTGGGTTGCTCTCGGCCTTGCCGTATTCTTCGACGCCGGTGGCTTTTCGGGCATTCCTGGGCTCCATCTCTTGCTCAGCTGTACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

10.66

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AclWI GGATC 2 cut(s) 37, 95
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 3 cut(s) 78, 180, 305
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 2 cut(s) 37, 95
AoxI GGCC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 286
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 1 cut(s) 90
BfaI CTAG 1 cut(s) 310
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 90, 280
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 90, 280
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 88, 279
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 88, 279
BseGI GGATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 176
BshFI GGCC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 90, 259
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 42, 100, 182
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 37, 95
BsrFI RCCGGY 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 88, 279
BssMI GATC 3 cut(s) 42, 100, 182
BssNI GRCGYC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 8, 297
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 45, 103, 185
BstMBI GATC 3 cut(s) 42, 100, 182
BstMWI GCNNNNNNNGC 2 cut(s) 38, 271
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 88, 278
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 171
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 258
CseI GACGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 77, 179, 304
CviJI RGCY 5 cut(s) 32, 238, 265, 284, 301
CviKI_1 RGCY 5 cut(s) 32, 238, 265, 284, 301
CviQI GTAC 3 cut(s) 77, 179, 304
DdeI CTNAG 2 cut(s) 8, 297
DpnI GATC 3 cut(s) 44, 102, 184
DpnII GATC 3 cut(s) 42, 100, 182
Eco24I GRGCYC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 286
FaiI YATR 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 310
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 238
HapII CCGG 2 cut(s) 90, 259
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HpaII CCGG 2 cut(s) 90, 259
Hpy166II GTNNAC 1 cut(s) 306
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 64, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 271
HpyF3I CTNAG 2 cut(s) 8, 297
Hsp92I GRCGYC 1 cut(s) 256
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 42, 100, 182
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 103, 118, 122, 146, 189, 209, 265, 272, 292
MaeI CTAG 1 cut(s) 310
MalI GATC 3 cut(s) 44, 102, 184
MboI GATC 3 cut(s) 42, 100, 182
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 5 cut(s) 13, 65, 124, 142, 156
MnlI CCTC 1 cut(s) 91
MseI TTAA 2 cut(s) 155, 198
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 2 cut(s) 90, 259
MspR9I CCNGG 2 cut(s) 90, 280
MunI CAATTG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 38, 271
NciI CCSGG 1 cut(s) 90
NdeII GATC 3 cut(s) 42, 100, 182
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 3 cut(s) 78, 180, 305
RsaNI GTAC 3 cut(s) 77, 179, 304
SaqAI TTAA 2 cut(s) 155, 198
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 42, 100, 182
ScrFI CCNGG 2 cut(s) 90, 280
SduI GDGCHC 1 cut(s) 286
SetI ASST 2 cut(s) 303, 311
SgrAI CRCCGGYG 1 cut(s) 258
Sse9I AATT 5 cut(s) 13, 65, 124, 142, 156
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 88, 278
TaqI TCGA 1 cut(s) 253
TasI AATT 5 cut(s) 13, 65, 124, 142, 156
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 155, 198
Tru9I TTAA 2 cut(s) 155, 198
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.