RLG00000028069

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006929
Physical Location & Seq
Reverse (-)
18288333 .. 18289813
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028069

Sequence Viewer

Length: 675 bp
ATGATTCGTAGAAAAAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAATCAAATCACAGCGTACCTGTCCAAAATCCAGAGGGGCTGCCATATCCAGCCGTTCGGGTGCACGATTGCGGGGGAAGAGTCCACCTTCTGGGTCATTGCCTACAGCGAGAACGCCCGGGACCTGCTCAACCTGATGCCCCAGTCGGTTTCGGTGCTTGAGAGGCGGGAGATCCTCACAATTGGGACCGACGTCAAGACGCTCTTCACGCCTTCTAGCTCAACTTTGCTGGAGAAGGCTTTCAGCGCTCGGGAGATTACTCTTCTCAACCCAATTTGGATACATTCGAGGGTTTCCGGCAAGCCGTTTTACGCGATTTTACATAGGATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCTAGAACAAAGGACCCGACTCTGTCTATAGCCGGGGCGGTGCAGTCTCAGAAGCTGGCCGTGAGGGCGATTTCGCAGCTGCAGTCACTACCCGGTGGGGATATTAAGCTTTTGTGTGACATGGTGGTGGAGAGTGTGAGGGAGCTTACTAGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCACAAGGAGGTTTTGGCTGAAATGGGTGAGCTTGGGCTTTTTCTCACATGA

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

4.76

Isoelectric Point (pI)

73.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 29 - 145 7.3e-36 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 386
AciI CCGC 3 cut(s) 143, 238, 470
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 89, 605
AfeI AGCGCT 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 162
AluBI AGCT 6 cut(s) 291, 487, 511, 541, 577, 655
AluI AGCT 6 cut(s) 291, 487, 511, 541, 577, 655
Alw21I GWGCWC 2 cut(s) 137, 627
Alw26I GTCTC 1 cut(s) 483
Alw44I GTGCAC 1 cut(s) 133
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 487
Ama87I CYCGRG 2 cut(s) 189, 321
Aor51HI AGCGCT 1 cut(s) 319
AoxI GGCC 1 cut(s) 489
ApaLI GTGCAC 1 cut(s) 133
ApeKI GCWGC 3 cut(s) 111, 508, 511
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 193, 258, 445
AsuC2I CCSGG 4 cut(s) 190, 191, 466, 525
AsuHPI GGTGA 1 cut(s) 662
AvaI CYCGRG 2 cut(s) 189, 321
AvaII GGWCC 3 cut(s) 193, 258, 445
BaeGI GKGCMC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 137, 627
BbvI GCAGC 3 cut(s) 98, 498, 520
BceAI ACGGC 3 cut(s) 109, 361, 476
BciVI GTATCC 1 cut(s) 345
BcnI CCSGG 4 cut(s) 190, 191, 466, 525
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 3 cut(s) 288, 435, 582
BfmI CTRYAG 3 cut(s) 175, 459, 512
BfoI RGCGCY 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 497
BisI GCNGC 3 cut(s) 112, 509, 512
BlsI GCNGC 3 cut(s) 113, 510, 513
Bme1390I CCNGG 4 cut(s) 190, 191, 466, 525
Bme18I GGWCC 3 cut(s) 193, 258, 445
BmeT110I CYCGRG 2 cut(s) 189, 321
BmgT120I GGNCC 3 cut(s) 193, 258, 445
BmiI GGNNCC 4 cut(s) 194, 259, 429, 447
BmrFI CCNGG 4 cut(s) 190, 191, 466, 525
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 4 cut(s) 190, 191, 466, 525
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 189, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 189, 465
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 3 cut(s) 98, 498, 520
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 137, 627
BsiHKCI CYCGRG 2 cut(s) 189, 321
BsiSI CCGG 4 cut(s) 190, 369, 465, 525
BslFI GGGAC 2 cut(s) 206, 271
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 2 cut(s) 206, 271
BsnI GGCC 1 cut(s) 491
BsoBI CYCGRG 2 cut(s) 189, 321
Bsp1286I GDGCHC 2 cut(s) 137, 627
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 3 cut(s) 143, 238, 470
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 194, 259, 429, 447
BspMAI CTGCAG 1 cut(s) 516
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 189, 465
BssMI GATC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 264
Bst6I CTCTTC 3 cut(s) 144, 281, 339
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 374, 432, 489
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 4 cut(s) 235, 280, 317, 497
BstPAI GACNNNNGTC 1 cut(s) 263
BstSCI CCNGG 4 cut(s) 188, 189, 464, 523
BstSFI CTRYAG 3 cut(s) 175, 459, 512
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 98, 498, 520
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 491
BtsCI GGATG 1 cut(s) 625
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 374, 432, 489
CaiI CAGNNNCTG 1 cut(s) 487
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 193, 258, 445
Cfr9I CCCGGG 1 cut(s) 189
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 88, 604
CviAII CATG 3 cut(s) 553, 614, 672
CviQI GTAC 2 cut(s) 88, 604
DdeI CTNAG 1 cut(s) 480
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 144, 281, 339
EarI CTCTTC 3 cut(s) 144, 281, 339
Eco47I GGWCC 3 cut(s) 193, 258, 445
Eco47III AGCGCT 1 cut(s) 319
Eco88I CYCGRG 2 cut(s) 189, 321
EcoO109I RGGNCCY 2 cut(s) 193, 445
FaeI CATG 3 cut(s) 556, 617, 675
FaiI YATR 8 cut(s) 117, 396, 461, 554, 588, 599, 615, 673
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 2 cut(s) 206, 271
FatI CATG 3 cut(s) 552, 613, 671
FauI CCCGC 2 cut(s) 136, 231
Fnu4HI GCNGC 3 cut(s) 112, 509, 512
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 3 cut(s) 112, 509, 512
FspBI CTAG 3 cut(s) 288, 435, 582
GlaI GCGC 1 cut(s) 319
GluI GCNGC 3 cut(s) 112, 509, 512
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 491
HapII CCGG 4 cut(s) 190, 369, 465, 525
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 3 cut(s) 556, 617, 675
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 3 cut(s) 4, 152, 451
HpaII CCGG 4 cut(s) 190, 369, 465, 525
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 3 cut(s) 135, 156, 604
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 4 cut(s) 103, 268, 323, 614
Hpy8I GTNNAC 3 cut(s) 135, 156, 604
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 169, 294, 301
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 135, 475, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 280, 317, 497
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 556, 617, 675
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 1 cut(s) 243
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 427, 574
Lsp1109I GCAGC 3 cut(s) 98, 498, 520
LweI GCATC 1 cut(s) 198
MaeI CTAG 3 cut(s) 288, 435, 582
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 516, 548
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 137, 627
MluCI AATT 2 cut(s) 252, 345
MlyI GAGTC 2 cut(s) 161, 445
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 557, 618
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 4 cut(s) 190, 369, 465, 525
MspR9I CCNGG 4 cut(s) 190, 191, 466, 525
MunI CAATTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 4 cut(s) 235, 280, 317, 497
NciI CCSGG 4 cut(s) 190, 191, 466, 525
NdeII GATC 1 cut(s) 243
NlaIII CATG 3 cut(s) 556, 617, 675
NlaIV GGNNCC 4 cut(s) 194, 259, 429, 447
NmuCI GTSAC 2 cut(s) 516, 548
PagI TCATGA 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 454
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 3 cut(s) 113, 510, 513
PleI GAGTC 2 cut(s) 160, 445
PpsI GAGTC 2 cut(s) 160, 445
PpuMI RGGWCCY 2 cut(s) 193, 445
PshAI GACNNNNGTC 1 cut(s) 263
Psp5II RGGWCCY 2 cut(s) 193, 445
PspN4I GGNNCC 4 cut(s) 194, 259, 429, 447
PspPI GGNCC 3 cut(s) 193, 258, 445
PspPPI RGGWCCY 2 cut(s) 193, 445
PstI CTGCAG 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 2 cut(s) 89, 605
RsaNI GTAC 2 cut(s) 88, 604
RseI CAYNNNNRTG 2 cut(s) 557, 618
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 112, 509, 512
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 3 cut(s) 193, 258, 445
SchI GAGTC 2 cut(s) 161, 445
ScrFI CCNGG 4 cut(s) 190, 191, 466, 525
SduI GDGCHC 2 cut(s) 137, 627
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 3 cut(s) 175, 459, 512
SinI GGWCC 3 cut(s) 193, 258, 445
SmaI CCCGGG 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 557, 618
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 252, 345
SsiI CCGC 3 cut(s) 143, 238, 470
SspMI CTAG 3 cut(s) 288, 435, 582
StyD4I CCNGG 4 cut(s) 188, 189, 464, 523
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 359
TaqII GACCGA 1 cut(s) 275
TasI AATT 2 cut(s) 252, 345
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TseFI GTSAC 2 cut(s) 516, 548
TseI GCWGC 3 cut(s) 111, 508, 511
Tsp45I GTSAC 2 cut(s) 516, 548
TspDTI ATGAA 1 cut(s) 602
TspMI CCCGGG 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 162
VneI GTGCAC 1 cut(s) 133
VpaK11BI GGWCC 3 cut(s) 193, 258, 445
XmaI CCCGGG 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 3 cut(s) 288, 435, 582
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.