Rh6DG108700

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006929
Physical Location & Seq
Forward (+)
14170847 .. 14171356
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG108700.1

Sequence Viewer

Length: 510 bp
ATGCCCCAGTCGGTTCAGGTGCTCGAGAGGCGGGAGATCCTCACAATCGGGATCGACGTCAGGACGCTCTTCACTCCTTCCAGCTCAACTTTGCTGGAGAAGGCTTTCCGCGCTCGAGAGATTACTCTTCTCAACCCAATTTGGATACATTCGAGGGTTTCCGGCAAGCCGTTTTACGCGATTTTGCATAGGATTGATGTTGGGGTTGTCATTGATTTGGAACCTGCTAGAACAGAGGACCCGACTCTGTCTATAGCCGGGGCGATACAGTCTCAGAAGTTGGCTGTGAGGGCGATTTCGCAGTTGCAGTCACTGCCCGGTGGGGATATTAAGCTTTTGTGTGACATGGTGGTGGAGAGTGTGAGGGAGCTTACTGGGTATGATAGAGTTATGGAGTACAAGTTTCATGAGGATGAGCACGGGGATGCTTTGGCTGAAGTGGGTGACATCAATAAAGCAACAGAACAGAATGGTAAACAAGGAAATAGGAAAAGAGAGCACCTACCATAG

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

5.96

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 7 - 76 3.4e-19 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 232
AccII CGCG 2 cut(s) 111, 179
AciI CCGC 2 cut(s) 31, 109
AclWI GGATC 2 cut(s) 31, 59
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 398
AluBI AGCT 3 cut(s) 84, 334, 370
AluI AGCT 3 cut(s) 84, 334, 370
Alw21I GWGCWC 3 cut(s) 24, 420, 501
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 31, 59
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 23, 114
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 259, 318
AsuHPI GGTGA 1 cut(s) 455
AvaI CYCGRG 2 cut(s) 23, 114
AvaII GGWCC 1 cut(s) 238
Bbv12I GWGCWC 3 cut(s) 24, 420, 501
BceAI ACGGC 1 cut(s) 154
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 2 cut(s) 259, 318
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 232
BfuI GTATCC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 259, 318
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 2 cut(s) 23, 114
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 222, 240
BmrFI CCNGG 2 cut(s) 259, 318
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 259, 318
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bse1I ACTGG 2 cut(s) 7, 379
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 418, 430
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 7, 379
Bsh1236I CGCG 2 cut(s) 111, 179
BsiHKAI GWGCWC 3 cut(s) 24, 420, 501
BsiHKCI CYCGRG 2 cut(s) 23, 114
BsiSI CCGG 3 cut(s) 162, 258, 318
BsmAI GTCTC 1 cut(s) 276
BsoBI CYCGRG 2 cut(s) 23, 114
Bsp1286I GDGCHC 3 cut(s) 24, 420, 501
Bsp143I GATC 2 cut(s) 36, 51
BspACI CCGC 2 cut(s) 31, 109
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 2 cut(s) 111, 179
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 222, 240
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 31, 59
BspQI GCTCTTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 7, 379
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 36, 51
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 2 cut(s) 74, 132
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 418, 430
BstFNI CGCG 2 cut(s) 111, 179
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 39, 54
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 36, 51
BstMWI GCNNNNNNNGC 4 cut(s) 28, 110, 290, 313
BstSCI CCNGG 2 cut(s) 257, 316
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 2 cut(s) 111, 179
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuI GTATCC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 418, 430
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 311
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 346, 407
CviJI RGCY 8 cut(s) 84, 104, 169, 257, 284, 334, 370, 434
CviKI_1 RGCY 8 cut(s) 84, 104, 169, 257, 284, 334, 370, 434
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 38, 53
DpnII GATC 2 cut(s) 36, 51
Eam1104I CTCTTC 2 cut(s) 74, 132
EarI CTCTTC 2 cut(s) 74, 132
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 2 cut(s) 23, 114
EcoO109I RGGNCCY 1 cut(s) 238
FaeI CATG 2 cut(s) 349, 410
FaiI YATR 7 cut(s) 189, 254, 347, 381, 392, 408, 508
FatI CATG 2 cut(s) 345, 406
FauI CCCGC 1 cut(s) 24
FokI GGATG 2 cut(s) 425, 437
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 116
HapII CCGG 3 cut(s) 162, 258, 318
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 349, 410
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 1 cut(s) 244
HpaII CCGG 3 cut(s) 162, 258, 318
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 5 cut(s) 25, 49, 61, 116, 407
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 87, 94
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 187, 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 110, 290, 313
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 349, 410
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 2 cut(s) 36, 51
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 367
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 309, 341, 443
MalI GATC 2 cut(s) 38, 53
MboI GATC 2 cut(s) 36, 51
MboII GAAGA 2 cut(s) 61, 119
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 3 cut(s) 24, 420, 501
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 7 cut(s) 21, 50, 147, 229, 282, 357, 403
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 3 cut(s) 350, 411, 423
MspI CCGG 3 cut(s) 162, 258, 318
MspR9I CCNGG 2 cut(s) 259, 318
MvnI CGCG 2 cut(s) 111, 179
MwoI GCNNNNNNNGC 4 cut(s) 28, 110, 290, 313
NciI CCSGG 2 cut(s) 259, 318
NdeII GATC 2 cut(s) 36, 51
NlaIII CATG 2 cut(s) 349, 410
NlaIV GGNNCC 2 cut(s) 222, 240
NmuCI GTSAC 3 cut(s) 309, 341, 443
PaeR7I CTCGAG 2 cut(s) 23, 114
PagI TCATGA 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 247
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 222, 240
PspPI GGNCC 1 cut(s) 238
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 3 cut(s) 350, 411, 423
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 36, 51
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 259, 318
SduI GDGCHC 3 cut(s) 24, 420, 501
SetI ASST 7 cut(s) 21, 60, 86, 226, 336, 372, 504
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 2 cut(s) 23, 114
SinI GGWCC 1 cut(s) 238
SlaI CTCGAG 2 cut(s) 23, 114
SmiMI CAYNNNNRTG 3 cut(s) 350, 411, 423
SmlI CTYRAG 2 cut(s) 23, 114
SmoI CTYRAG 2 cut(s) 23, 114
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 31, 109
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 257, 316
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 24, 54, 115, 152
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 3 cut(s) 309, 341, 443
Tsp45I GTSAC 3 cut(s) 309, 341, 443
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 238
XhoI CTCGAG 2 cut(s) 23, 114
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.