RLG00000013469

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006929
Physical Location & Seq
Forward (+)
32024256 .. 32026339
2084 bp
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UTR
Exon/CDS
Intron
RLM00000013469

Sequence Viewer

Length: 465 bp
ATGGGTTATGCTGTGGTTTTTGAAAACAATGGGTGTTCATGTGGTTTTAAGAATAATGGGTTGTGCCGTGGTGTTGGAAAACAATTGGCGATCACAGGGGCTGCCATATCCAGCCGTTGGGGTGCACGATTGCGGTGGAAGAGTCCACCTTCGGGTCATTGCCTACAGCGAGAACCCCGGGACCTGCTCGATTTGATGCCCCAGTCGGTTCCGGTGCTCAAGAGGCGGGAGATCTTCACAATCGGGACCGACGTCGGGACGCTCTTCACGCCTTCCAGCTCAACTTTGCTGGAGAAGGCTTTCCGTGCTCAGGAGATTACTCTTCTCAACCCAATTTGGATACATTCGAGGGTTTCCTGCAAGCCGTTTTACACGAGTTTGCATAGGATTGATGTTGGGGTTGTCATTGATTTGGAGCCTACTAGAACAGAGGACCCGACTCTGTTTATAGCCGGGGCAGTGTAG

Protein Analysis

155

Amino Acids

16.99

Weight (kDa)

9.17

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 62 - 140 8.6e-18 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 117
AciI CCGC 2 cut(s) 133, 226
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 4 cut(s) 117, 152, 255, 310
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw21I GWGCWC 3 cut(s) 127, 219, 310
Alw44I GTGCAC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 181, 246, 433
AsuC2I CCSGG 3 cut(s) 178, 179, 454
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 3 cut(s) 181, 246, 433
BaeGI GKGCMC 1 cut(s) 127
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 3 cut(s) 127, 219, 310
BbvI GCAGC 1 cut(s) 88
BceAI ACGGC 3 cut(s) 51, 99, 349
BciVI GTATCC 1 cut(s) 333
BcnI CCSGG 3 cut(s) 178, 179, 454
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 192
BfuI GTATCC 1 cut(s) 333
BglII AGATCT 1 cut(s) 231
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 178, 179, 454
Bme18I GGWCC 3 cut(s) 181, 246, 433
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 181, 246, 433
BmiI GGNNCC 5 cut(s) 182, 210, 247, 417, 435
BmrFI CCNGG 3 cut(s) 178, 179, 454
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 3 cut(s) 178, 179, 454
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 67, 176, 177, 453
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 152, 255, 310
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 157
BseDI CCNNGG 4 cut(s) 67, 176, 177, 453
BseLI CCNNNNNNNGG 4 cut(s) 117, 152, 255, 310
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 3 cut(s) 127, 219, 310
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 3 cut(s) 178, 212, 453
BslFI GGGAC 3 cut(s) 194, 259, 271
BslI CCNNNNNNNGG 4 cut(s) 117, 152, 255, 310
BsmFI GGGAC 3 cut(s) 194, 259, 271
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 3 cut(s) 127, 219, 310
Bsp143I GATC 2 cut(s) 90, 231
BspACI CCGC 2 cut(s) 133, 226
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 182, 210, 247, 417, 435
BspMI ACCTGC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 4 cut(s) 67, 176, 177, 453
BssMI GATC 2 cut(s) 90, 231
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst6I CTCTTC 3 cut(s) 134, 269, 327
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 67
BstKTI GATC 2 cut(s) 93, 234
BstMBI GATC 2 cut(s) 90, 231
BstMWI GCNNNNNNNGC 3 cut(s) 223, 268, 305
BstPAI GACNNNNGTC 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 176, 177, 452
BstSFI CTRYAG 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuI GTATCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 181, 246, 433
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 1 cut(s) 268
CviAII CATG 1 cut(s) 39
CviJI RGCY 7 cut(s) 101, 114, 279, 299, 364, 418, 452
CviKI_1 RGCY 7 cut(s) 101, 114, 279, 299, 364, 418, 452
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 92, 233
DpnII GATC 2 cut(s) 90, 231
Eam1104I CTCTTC 3 cut(s) 134, 269, 327
EarI CTCTTC 3 cut(s) 134, 269, 327
Eco47I GGWCC 3 cut(s) 181, 246, 433
Eco88I CYCGRG 1 cut(s) 177
EcoO109I RGGNCCY 2 cut(s) 181, 433
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 9, 40, 107, 384, 449
FaqI GGGAC 3 cut(s) 194, 259, 271
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 311
HapII CCGG 3 cut(s) 178, 212, 453
HgaI GACGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 1 cut(s) 42
HinfI GANTC 2 cut(s) 142, 439
HpaII CCGG 3 cut(s) 178, 212, 453
Hpy166II GTNNAC 2 cut(s) 125, 146
Hpy188III TCNNGA 4 cut(s) 220, 244, 256, 311
Hpy8I GTNNAC 2 cut(s) 125, 146
Hpy99I CGWCG 2 cut(s) 254, 257
HpyAV CCTTC 3 cut(s) 159, 282, 289
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 125, 360, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 268, 305
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 1 cut(s) 42
Kzo9I GATC 2 cut(s) 90, 231
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 252
MalI GATC 2 cut(s) 92, 233
MboI GATC 2 cut(s) 90, 231
MboII GAAGA 4 cut(s) 151, 226, 256, 314
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 127, 219, 310
MluCI AATT 2 cut(s) 83, 333
MlyI GAGTC 2 cut(s) 151, 433
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 216, 342, 424
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 48
MspI CCGG 3 cut(s) 178, 212, 453
MspR9I CCNGG 3 cut(s) 178, 179, 454
MunI CAATTG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 223, 268, 305
NciI CCSGG 3 cut(s) 178, 179, 454
NdeII GATC 2 cut(s) 90, 231
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 5 cut(s) 182, 210, 247, 417, 435
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 150, 433
PpsI GAGTC 2 cut(s) 150, 433
PpuMI RGGWCCY 2 cut(s) 181, 433
PshAI GACNNNNGTC 1 cut(s) 251
Psp5II RGGWCCY 2 cut(s) 181, 433
PspN4I GGNNCC 5 cut(s) 182, 210, 247, 417, 435
PspPI GGNCC 3 cut(s) 181, 246, 433
PspPPI RGGWCCY 2 cut(s) 181, 433
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 90, 231
Sau96I GGNCC 3 cut(s) 181, 246, 433
SchI GAGTC 2 cut(s) 151, 433
ScrFI CCNGG 3 cut(s) 178, 179, 454
SduI GDGCHC 3 cut(s) 127, 219, 310
SetI ASST 4 cut(s) 151, 186, 255, 281
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 164
SinI GGWCC 3 cut(s) 181, 246, 433
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 83, 333
SsiI CCGC 2 cut(s) 133, 226
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 176, 177, 452
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 189, 347
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 83, 333
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 465
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 293
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 1 cut(s) 465
Van91I CCANNNNNTGG 1 cut(s) 117
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 3 cut(s) 181, 246, 433
XmaI CCCGGG 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 423
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.