Rh7BG343600

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006929
Physical Location & Seq
Reverse (-)
35830233 .. 35832104
1872 bp
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UTR
Exon/CDS
Intron
Rh7BG343600.1

Sequence Viewer

Length: 468 bp
ATGGCAGCAACTACTGATAGTGGACCCAATTTGGAGATTACTCTTCTCAACCCAATTTGGATACATTCGAGGGTTTCCGGTAAGCCGTTTTACGCAATTTTGCATAGAATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCTAGAACAATGGACCCGACTTTGTCTATAGCCGGGGCGGTGCAGTCTCAGAAGCTGGCCGTGAGGGCGATTTTGCAGCTGCAATCACTGCCCGGTGGGGATATTAAGCTTTTGTGTGACACGGTGGTGGAGAGTGTGAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCACGGGGAGATGGCTGCTGACATAGATCCGGTGAAAGAGGATGTTGTGAGGGGCGTGTGGGACAGTGGTGGTGTTTTGGCTGTTGTTCACCGTGGTTGGCTAACAGAGGTGGCAAAATGCGGCGATTTGGTCTAG

Protein Analysis

155

Amino Acids

16.9

Weight (kDa)

4.98

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 10 - 48 4.5e-11 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 453
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 198
AfaI GTAC 1 cut(s) 314
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 4 cut(s) 196, 220, 250, 286
AluI AGCT 4 cut(s) 196, 220, 250, 286
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 4 cut(s) 5, 217, 220, 347
AspS9I GGNCC 2 cut(s) 23, 154
AsuC2I CCSGG 2 cut(s) 175, 234
AsuHPI GGTGA 2 cut(s) 376, 413
AvaII GGWCC 2 cut(s) 23, 154
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 4 cut(s) 17, 207, 229, 334
BccI CCATC 1 cut(s) 337
BceAI ACGGC 2 cut(s) 70, 185
BciVI GTATCC 1 cut(s) 54
BcnI CCSGG 2 cut(s) 175, 234
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 144, 466
BfmI CTRYAG 1 cut(s) 168
BfuI GTATCC 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 5 cut(s) 6, 218, 221, 348, 454
BlsI GCNGC 5 cut(s) 7, 219, 222, 349, 455
Bme1390I CCNGG 2 cut(s) 175, 234
Bme18I GGWCC 2 cut(s) 23, 154
BmgT120I GGNCC 2 cut(s) 23, 154
BmiI GGNNCC 3 cut(s) 25, 138, 156
BmrFI CCNGG 2 cut(s) 175, 234
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 175, 234
BsaJI CCNNGG 2 cut(s) 174, 424
BsaWI WCCGGW 2 cut(s) 77, 361
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 174, 424
BseGI GGATG 2 cut(s) 334, 379
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 17, 207, 229, 334
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 4 cut(s) 78, 174, 234, 362
BslFI GGGAC 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 2 cut(s) 179, 453
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 25, 138, 156
BspPI GGATC 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 174, 424
BssMI GATC 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 265, 398, 425
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 229
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 141, 198
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 2 cut(s) 334, 379
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 206, 229
BstSCI CCNGG 2 cut(s) 173, 232
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 17, 207, 229, 334
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 334, 379
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 403
Cac8I GCNNGC 2 cut(s) 141, 198
CaiI CAGNNNCTG 1 cut(s) 196
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 23, 154
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 323
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 23, 154
FaeI CATG 1 cut(s) 326
FaiI YATR 6 cut(s) 105, 170, 297, 308, 324, 356
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 6, 218, 221, 348, 454
FokI GGATG 2 cut(s) 341, 386
Fsp4HI GCNGC 5 cut(s) 6, 218, 221, 348, 454
FspBI CTAG 2 cut(s) 144, 466
GluI GCNGC 5 cut(s) 6, 218, 221, 348, 454
HaeIII GGCC 1 cut(s) 200
HapII CCGG 4 cut(s) 78, 174, 234, 362
Hin1II CATG 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 248
HpaII CCGG 4 cut(s) 78, 174, 234, 362
HphI GGTGA 2 cut(s) 376, 413
Hpy166II GTNNAC 3 cut(s) 23, 313, 421
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 3 cut(s) 23, 313, 421
HpyCH4III ACNGT 3 cut(s) 265, 398, 425
HpyCH4V TGCA 4 cut(s) 103, 184, 217, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 229
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 2 cut(s) 136, 283
LpnPI CCDG 7 cut(s) 91, 153, 182, 187, 247, 276, 375
Lsp1109I GCAGC 4 cut(s) 17, 207, 229, 334
MaeI CTAG 2 cut(s) 144, 466
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 28, 54, 96, 108
MnlI CCTC 7 cut(s) 63, 198, 273, 319, 364, 375, 433
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 266, 327
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 4 cut(s) 78, 174, 234, 362
MspR9I CCNGG 2 cut(s) 175, 234
MwoI GCNNNNNNNGC 2 cut(s) 206, 229
NciI CCSGG 2 cut(s) 175, 234
NdeII GATC 1 cut(s) 358
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 3 cut(s) 25, 138, 156
NmuCI GTSAC 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 163
PkrI GCNGC 5 cut(s) 7, 219, 222, 349, 455
PspN4I GGNNCC 3 cut(s) 25, 138, 156
PspPI GGNCC 2 cut(s) 23, 154
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 2 cut(s) 266, 327
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 5 cut(s) 6, 218, 221, 348, 454
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 2 cut(s) 23, 154
ScrFI CCNGG 2 cut(s) 175, 234
SduI GDGCHC 1 cut(s) 336
SetI ASST 5 cut(s) 198, 222, 252, 288, 444
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 23, 154
SmiMI CAYNNNNRTG 2 cut(s) 266, 327
Sse9I AATT 4 cut(s) 28, 54, 96, 108
SsiI CCGC 2 cut(s) 179, 453
SspMI CTAG 2 cut(s) 144, 466
StyD4I CCNGG 2 cut(s) 173, 232
TaaI ACNGT 3 cut(s) 265, 398, 425
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 28, 54, 96, 108
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 456
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 234, 403
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 4 cut(s) 5, 217, 220, 347
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 2 cut(s) 234, 403
Tth111I GACNNNGTC 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 23, 154
XspI CTAG 2 cut(s) 144, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.