Rh6DG223800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006929
Physical Location & Seq
Forward (+)
40144454 .. 40161110
16657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG223800.1

Sequence Viewer

Length: 180 bp
ATGACACTCGACATACAAACAGCCAAAGCCCACAAACTGGACAAAGGCATGAAAGCTTTGAATGGAAGAGTCCACCTTCAGGGTCATTGCCTACAGCAAGAACGCCCGGGACCTGCTCGACCTGATGCCCCAGTCGGTTCCAGTGCTCGAGAGGCGGGAGATCCTCACAATTGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.41

Weight (kDa)

8.0

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 37, 79
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 148
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 2 cut(s) 106, 147
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 107, 108
AvaI CYCGRG 2 cut(s) 106, 147
AvaII GGWCC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 148
BcnI CCSGG 2 cut(s) 107, 108
BfmI CTRYAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 107, 108
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 106, 147
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 111, 139
BmrFI CCNGG 2 cut(s) 107, 108
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 107, 108
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 79
Bse1I ACTGG 3 cut(s) 42, 131, 141
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 37, 79
BseMI GCAATG 1 cut(s) 85
BseNI ACTGG 3 cut(s) 42, 131, 141
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 2 cut(s) 106, 147
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 37, 79
BsmFI GGGAC 1 cut(s) 123
BsoBI CYCGRG 2 cut(s) 106, 147
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 111, 139
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 3 cut(s) 42, 131, 141
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 61
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 105, 106
BstSFI CTRYAG 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 106
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 23, 29, 56
CviKI_1 RGCY 3 cut(s) 23, 29, 56
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 2 cut(s) 106, 147
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 1 cut(s) 52
FaiI YATR 2 cut(s) 14, 50
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 148
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 23, 65, 120, 126, 135, 144, 154
LweI GCATC 1 cut(s) 115
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 78
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 2 cut(s) 145, 174
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 107, 108
MunI CAATTG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 2 cut(s) 107, 108
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 111, 139
PaeR7I CTCGAG 1 cut(s) 147
PflMI CCANNNNNTGG 1 cut(s) 37
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 111, 139
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 1 cut(s) 160
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 107, 108
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 58, 78, 115, 124
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 92
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 147
SmaI CCCGGG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 105, 106
TaqI TCGA 3 cut(s) 9, 118, 148
TasI AATT 1 cut(s) 169
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 65
TspMI CCCGGG 1 cut(s) 106
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 147
XmaI CCCGGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.