Rh1CG080300

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006929
Physical Location & Seq
Forward (+)
16794246 .. 16815530
21285 bp
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UTR
Exon/CDS
Intron
Rh1CG080300.1

Sequence Viewer

Length: 651 bp
ATGCCCCAGTCGGTTCCGGTGCTCGAGAGGCGGGAGATCCTCACAGTAGGGACCGACGTCAGGACGCCTTCCAGCTCAACTTTGTTGGAGAAGGCTTTCCGCGCTCGGGAGATTACTCTTCTCAACCCAATTTGGATACATTCGAGGGTTTCCAGCAAGCCGTTTTACGCGATTTTGCATAGGATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCTAGTACAGAGGACCCGACTTTGTCTATAGCCAGGGCGGTGCAGTCTCAGAAGCTGGCCGTGAGGGCGATTTCGCAACTGCAGTCACTGCCCGGTGGGGATATTAAGCTTTTGTGTGACATGGTGGTGGAGAGTGTGAGGGAGCTTACTGGGTATGATAGAGTTATGGAGTACAAGTTTCATGAGGATGAGCACGGGGAGGTTTTGGCTAAAAGTGGCCTCCTCCGCTCTCCCGTTGCTCCGGCCTCCTCCTCTCCCATTGCTCCAGCCACAGTAGGTTTCTCAAAACGCGGTGACCTCCTCCGACCTCTACTGAAAACATCTCCTAAGATCAAAGCCTTTATCAATAAGGTGGTACAGTGTCCATTACAAGATATAGCTATTCCTCTTTCCGGTTTCCAGTGGGAGTACAATAAGTGCTTCAAACCGCCTTGA

Protein Analysis

216

Amino Acids

23.9

Weight (kDa)

8.99

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 19 - 73 8.2e-15 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 444
AccII CGCG 3 cut(s) 102, 170, 507
AciI CCGC 6 cut(s) 31, 100, 254, 442, 507, 644
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 273
AcyI GRCGYC 2 cut(s) 57, 65
AfaI GTAC 4 cut(s) 223, 389, 573, 626
AfiI CCNNNNNNNGG 3 cut(s) 60, 106, 608
AgsI TTSAA 1 cut(s) 640
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 5 cut(s) 75, 271, 325, 361, 596
AluI AGCT 5 cut(s) 75, 271, 325, 361, 596
Alw21I GWGCWC 2 cut(s) 24, 411
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 2 cut(s) 271, 304
Ama87I CYCGRG 2 cut(s) 23, 105
AoxI GGCC 3 cut(s) 273, 433, 459
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 51, 229
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 521
AvaI CYCGRG 2 cut(s) 23, 105
AvaII GGWCC 2 cut(s) 51, 229
Bbv12I GWGCWC 2 cut(s) 24, 411
BceAI ACGGC 2 cut(s) 145, 260
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 243, 296
BfuI GTATCC 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 250, 309
Bme18I GGWCC 2 cut(s) 51, 229
BmeT110I CYCGRG 2 cut(s) 23, 105
BmgT120I GGNCC 2 cut(s) 51, 229
BmiI GGNNCC 4 cut(s) 15, 52, 213, 231
BmrFI CCNGG 2 cut(s) 250, 309
BmrI ACTGGG 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 57, 65
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 16, 608
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 106, 608
Bse1I ACTGG 3 cut(s) 7, 370, 616
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 3 cut(s) 60, 106, 608
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 3 cut(s) 7, 370, 616
BseRI GAGGAG 4 cut(s) 428, 454, 457, 506
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 3 cut(s) 102, 170, 507
BshFI GGCC 3 cut(s) 275, 435, 461
BsiHKAI GWGCWC 2 cut(s) 24, 411
BsiHKCI CYCGRG 2 cut(s) 23, 105
BsiSI CCGG 4 cut(s) 17, 309, 458, 609
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 60, 106, 608
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 3 cut(s) 275, 435, 461
BsoBI CYCGRG 2 cut(s) 23, 105
Bsp1286I GDGCHC 2 cut(s) 24, 411
Bsp143I GATC 2 cut(s) 36, 546
BspACI CCGC 6 cut(s) 31, 100, 254, 442, 507, 644
BspANI GGCC 3 cut(s) 275, 435, 461
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 3 cut(s) 102, 170, 507
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 4 cut(s) 15, 52, 213, 231
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 3 cut(s) 7, 370, 616
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 36, 546
BssNI GRCGYC 2 cut(s) 57, 65
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 46, 490, 576
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 57, 65
BstAPI GCANNNNNTGC 1 cut(s) 304
BstC8I GCNNGC 3 cut(s) 158, 216, 273
BstDEI CTNAG 2 cut(s) 264, 543
BstEII GGTNACC 1 cut(s) 509
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 3 cut(s) 102, 170, 507
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 39, 549
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 36, 546
BstMWI GCNNNNNNNGC 5 cut(s) 28, 101, 281, 304, 441
BstNI CCWGG 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 56
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 248, 307
BstSFI CTRYAG 2 cut(s) 243, 296
BstUI CGCG 3 cut(s) 102, 170, 507
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 3 cut(s) 275, 435, 461
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 3 cut(s) 302, 581, 623
Cac8I GCNNGC 3 cut(s) 158, 216, 273
CaiI CAGNNNCTG 2 cut(s) 271, 304
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 51, 229
CseI GACGC 1 cut(s) 73
Csp6I GTAC 4 cut(s) 222, 388, 572, 625
CviAII CATG 2 cut(s) 337, 398
CviQI GTAC 4 cut(s) 222, 388, 572, 625
DdeI CTNAG 2 cut(s) 264, 543
DpnI GATC 2 cut(s) 38, 548
DpnII GATC 2 cut(s) 36, 546
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 51, 229
Eco88I CYCGRG 2 cut(s) 23, 105
Eco91I GGTNACC 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 340, 401
FaiI YATR 7 cut(s) 180, 245, 338, 372, 383, 399, 593
FaqI GGGAC 1 cut(s) 64
FatI CATG 2 cut(s) 336, 397
FauI CCCGC 1 cut(s) 24
FokI GGATG 1 cut(s) 416
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 3 cut(s) 275, 435, 461
HapII CCGG 4 cut(s) 17, 309, 458, 609
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 2 cut(s) 57, 65
Hin1II CATG 2 cut(s) 340, 401
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 323
HpaII CCGG 4 cut(s) 17, 309, 458, 609
HphI GGTGA 1 cut(s) 521
Hpy188I TCNGA 2 cut(s) 267, 521
Hpy188III TCNNGA 4 cut(s) 25, 61, 107, 398
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 78, 85
HpyCH4III ACNGT 3 cut(s) 46, 490, 576
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 178, 259, 298
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 101, 281, 304, 441
HpyF3I CTNAG 2 cut(s) 264, 543
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 2 cut(s) 57, 65
Hsp92II CATG 2 cut(s) 340, 401
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 36, 546
LmnI GCTCC 4 cut(s) 211, 358, 460, 484
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 300, 332, 509
MalI GATC 2 cut(s) 38, 548
MbiI CCGCTC 1 cut(s) 444
MboI GATC 2 cut(s) 36, 546
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 24, 411
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 66, 544
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 341, 402
MspI CCGG 4 cut(s) 17, 309, 458, 609
MspR9I CCNGG 2 cut(s) 250, 309
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 3 cut(s) 102, 170, 507
MwoI GCNNNNNNNGC 5 cut(s) 28, 101, 281, 304, 441
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 36, 546
NlaIII CATG 2 cut(s) 340, 401
NlaIV GGNNCC 4 cut(s) 15, 52, 213, 231
NmuCI GTSAC 3 cut(s) 300, 332, 509
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 229
PshAI GACNNNNGTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 509
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 4 cut(s) 15, 52, 213, 231
PspPI GGNCC 2 cut(s) 51, 229
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 300
PstNI CAGNNNCTG 2 cut(s) 271, 304
PsuI RGATCY 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 4 cut(s) 223, 389, 573, 626
RsaNI GTAC 4 cut(s) 222, 388, 572, 625
RseI CAYNNNNRTG 2 cut(s) 341, 402
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 2 cut(s) 36, 546
Sau96I GGNCC 2 cut(s) 51, 229
ScrFI CCNGG 2 cut(s) 250, 309
SduI GDGCHC 2 cut(s) 24, 411
SfcI CTRYAG 2 cut(s) 243, 296
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 2 cut(s) 51, 229
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 341, 402
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 129
SsiI CCGC 6 cut(s) 31, 100, 254, 442, 507, 644
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 248, 307
TaaI ACNGT 3 cut(s) 46, 490, 576
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 24, 143
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 129
TatI WGTACW 3 cut(s) 221, 387, 624
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 3 cut(s) 309, 581, 623
TseFI GTSAC 3 cut(s) 300, 332, 509
Tsp45I GTSAC 3 cut(s) 300, 332, 509
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 3 cut(s) 309, 581, 623
Tth111I GACNNNGTC 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 51, 229
XhoI CTCGAG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.