Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Reverse (-)

35500233 .. 35500535

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCCCAGTCGGTTCCAGTGCTCGAGAGGCGGGAGATCCTCACAATCGGGACCGACGTCAGGACGCTCTTCACGCCTTCCAGCTCAACTTTGCTGGAGAAGGCTTTCCGTGCTTGGGAGATTACTCTTCTCAACCTAATTTGGATACATTCGAGGGTTTTCGGCAAGCCGTTTTACACGATTTTGCATAGGATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCTAGAACAGAGGACCCGACTCTGTCTATAGTCGGGGCGGTGCAGTCTCAGAAGCTGGCCGTGAGGGCGATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

100

Amino Acids

11.24

Weight (kDa)

8.23

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_2	PF08446	11 - 76	8.5e-17	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	2 cut(s)	31, 263
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	60, 115
AluBI	AGCT	2 cut(s)	84, 280
AluI	AGCT	2 cut(s)	84, 280
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	51, 238
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	51, 238
Bbv12I	GWGCWC	1 cut(s)	24
BceAI	ACGGC	2 cut(s)	154, 269
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	51, 238
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	51, 238
BmiI	GGNNCC	4 cut(s)	15, 52, 222, 240
BoxI	GACNNNNGTC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 115
Bse1I	ACTGG	2 cut(s)	7, 17
BseLI	CCNNNNNNNGG	2 cut(s)	60, 115
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	2 cut(s)	7, 17
BsgI	GTGCAG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	60, 115
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	31, 263
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	15, 52, 222, 240
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	7, 17
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	74, 132
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	167, 225, 282
BstDEI	CTNAG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 73, 110, 290
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	167, 225, 282
CaiI	CAGNNNCTG	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	51, 238
CseI	GACGC	1 cut(s)	73
CviJI	RGCY	6 cut(s)	84, 104, 169, 223, 280, 284
CviKI_1	RGCY	6 cut(s)	84, 104, 169, 223, 280, 284
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	74, 132
EarI	CTCTTC	2 cut(s)	74, 132
Eco47I	GGWCC	2 cut(s)	51, 238
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	238
FaiI	YATR	2 cut(s)	189, 254
FaqI	GGGAC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	25, 49, 61
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	87, 94
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	187, 268
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 73, 110, 290
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	20, 30, 46, 80, 94, 237, 266
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	61, 119
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	5 cut(s)	21, 50, 147, 229, 282
MroXI	GAANNNNTTC	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	28, 73, 110, 290
NdeII	GATC	1 cut(s)	36
NlaIV	GGNNCC	4 cut(s)	15, 52, 222, 240
PaeR7I	CTCGAG	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	238
PspN4I	GGNNCC	4 cut(s)	15, 52, 222, 240
PspPI	GGNCC	2 cut(s)	51, 238
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	51, 238
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	4 cut(s)	60, 86, 138, 282
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	51, 238
SlaI	CTCGAG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	31, 263
SspMI	CTAG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	24, 152
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	138
TscAI	CASTG	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	51, 238
XhoI	CTCGAG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.