pycom04g16280

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0006929
Physical Location & Seq
Forward (+)
18992425 .. 18993063
639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16280.1

Sequence Viewer

Length: 639 bp
ATGCTGACTACGGTCAGTCATGCAGTCCCAAGTGTCGGGGACTCCCCTGTTCTTGGCCTAGGAACAGATATTAGAACAATTTTCACTGCACCTAGTGCCTCTGCACTGCATAAGGCCCTAGGATTTGGAGAGGTTTCTCTCTTAAATCCCATCTTAGTCCATTGCAAGACCTCTGGCAAGCCTTTCTATGCAATAACCCATCGTGTAACGGGCAGTTTGATCATTGACTTTGAGCCGGTGAAGCCTTATGAAGTCCCTATGACTGCTGCCGGGGCCTTGCAATCGTACAAGCTTGCAGCCAAAGCAATTGCCAGATTGCAGTCTTTGCCTAGTGGGAGCATGGAGAGGCTTTGTGATACAATGGTACAAGAGGTTTTTGAACTCACTGGTTATGACAGGGTGATGGCCTATAAATTTCATGATGATGATCATGGAGAGGTGGTCTCTGAGCTTACGAAGCCTGTCCTGGAGCCATATCTAGGTTTGCATTATCCATCCACTGACATCCCACAGGCTTCACGGTTCCTATTTATGAAGAATAAGGTCCGCATGATTGTCGATTGTTGTGCGAAACATGTGAAGGTTTTTCAAGATGAGAAGCTTCCGCTGGATCGATCACATTGTGCGGTTCAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

213

Amino Acids

23.29

Weight (kDa)

6.74

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 20 - 80 7.4e-17 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 547, 605, 626
AclWI GGATC 1 cut(s) 618
AcsI RAATTY 1 cut(s) 413
AdeI CACNNNGTG 2 cut(s) 95, 623
AfaI GTAC 2 cut(s) 287, 366
AfiI CCNNNNNNNGG 3 cut(s) 35, 53, 479
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 3 cut(s) 380, 590, 632
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 292, 451, 601
AluI AGCT 3 cut(s) 292, 451, 601
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 618
AoxI GGCC 4 cut(s) 55, 114, 273, 405
ApeKI GCWGC 2 cut(s) 266, 296
ApoI RAATTY 1 cut(s) 413
AspA2I CCTAGG 2 cut(s) 58, 118
AspS9I GGNCC 3 cut(s) 115, 273, 544
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 250, 412
AvaII GGWCC 1 cut(s) 544
AvrII CCTAGG 2 cut(s) 58, 118
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BbvI GCAGC 2 cut(s) 253, 308
BccI CCATC 4 cut(s) 158, 207, 397, 502
BcgI CGANNNNNNTGC 4 cut(s) 538, 548, 572, 582
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 2 cut(s) 219, 427
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 448
BfaI CTAG 5 cut(s) 59, 93, 119, 330, 479
BisI GCNGC 2 cut(s) 267, 297
BlnI CCTAGG 2 cut(s) 58, 118
BlsI GCNGC 2 cut(s) 268, 298
Bme1390I CCNGG 2 cut(s) 271, 467
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 3 cut(s) 115, 273, 544
BmiI GGNNCC 3 cut(s) 274, 471, 524
BmrFI CCNGG 2 cut(s) 271, 467
BoxI GACNNNNGTC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 3 cut(s) 58, 118, 270
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 53, 479
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 613
BseDI CCNNGG 3 cut(s) 58, 118, 270
BseGI GGATG 2 cut(s) 494, 504
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 35, 53, 479
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 2 cut(s) 253, 308
BsgI GTGCAG 2 cut(s) 72, 87
BshFI GGCC 4 cut(s) 57, 116, 275, 407
BshVI ATCGAT 1 cut(s) 613
BsiSI CCGG 2 cut(s) 236, 270
BslFI GGGAC 3 cut(s) 11, 53, 239
BslI CCNNNNNNNGG 3 cut(s) 35, 53, 479
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 3 cut(s) 11, 53, 239
BsnI GGCC 4 cut(s) 57, 116, 275, 407
Bso31I GGTCTC 1 cut(s) 448
Bsp143I GATC 4 cut(s) 219, 427, 610, 614
BspACI CCGC 3 cut(s) 547, 605, 626
BspANI GGCC 4 cut(s) 57, 116, 275, 407
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 613
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 274, 471, 524
BspPI GGATC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 58, 118, 270
BssMI GATC 4 cut(s) 219, 427, 610, 614
BssT1I CCWWGG 2 cut(s) 58, 118
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 2 cut(s) 13, 522
BstAPI GCANNNNNTGC 2 cut(s) 95, 325
BstC8I GCNNGC 2 cut(s) 179, 294
BstDEI CTNAG 2 cut(s) 154, 447
BstF5I GGATG 2 cut(s) 494, 504
BstKTI GATC 4 cut(s) 222, 430, 613, 617
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 4 cut(s) 219, 427, 610, 614
BstMWI GCNNNNNNNGC 6 cut(s) 95, 241, 272, 302, 325, 457
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 578
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 269, 465
BstV1I GCAGC 2 cut(s) 253, 308
Bsu15I ATCGAT 1 cut(s) 613
BsuRI GGCC 4 cut(s) 57, 116, 275, 407
BsuTUI ATCGAT 1 cut(s) 613
BtsCI GGATG 2 cut(s) 494, 504
BtsI GCAGTG 2 cut(s) 84, 104
BtsIMutI CAGTG 4 cut(s) 84, 104, 384, 498
Cac8I GCNNGC 2 cut(s) 179, 294
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 115, 273, 544
ClaI ATCGAT 1 cut(s) 613
Csp6I GTAC 2 cut(s) 286, 365
CviAII CATG 6 cut(s) 20, 340, 419, 431, 550, 575
CviQI GTAC 2 cut(s) 286, 365
DdeI CTNAG 2 cut(s) 154, 447
DpnI GATC 4 cut(s) 221, 429, 612, 616
DpnII GATC 4 cut(s) 219, 427, 610, 614
DraIII CACNNNGTG 2 cut(s) 95, 623
Eco130I CCWWGG 2 cut(s) 58, 118
Eco31I GGTCTC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 544
EcoO109I RGGNCCY 2 cut(s) 115, 273
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 58, 118
ErhI CCWWGG 2 cut(s) 58, 118
FaeI CATG 6 cut(s) 23, 343, 422, 434, 553, 578
FaqI GGGAC 3 cut(s) 11, 53, 239
FatI CATG 6 cut(s) 19, 339, 418, 430, 549, 574
FbaI TGATCA 2 cut(s) 219, 427
Fnu4HI GCNGC 2 cut(s) 267, 297
FokI GGATG 2 cut(s) 481, 491
Fsp4HI GCNGC 2 cut(s) 267, 297
FspBI CTAG 5 cut(s) 59, 93, 119, 330, 479
GluI GCNGC 2 cut(s) 267, 297
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 4 cut(s) 57, 116, 275, 407
HapII CCGG 2 cut(s) 236, 270
Hin1II CATG 6 cut(s) 23, 343, 422, 434, 553, 578
HindIII AAGCTT 2 cut(s) 290, 599
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 236, 270
HphI GGTGA 2 cut(s) 250, 412
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 419, 590
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 2 cut(s) 13, 522
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 241, 272, 302, 325, 457
HpyF3I CTNAG 2 cut(s) 154, 447
Hsp92II CATG 6 cut(s) 23, 343, 422, 434, 553, 578
Ksp22I TGATCA 2 cut(s) 219, 427
Kzo9I GATC 4 cut(s) 219, 427, 610, 614
LmnI GCTCC 2 cut(s) 336, 469
Lsp1109I GCAGC 2 cut(s) 253, 308
MaeI CTAG 5 cut(s) 59, 93, 119, 330, 479
MaeIII GTNAC 1 cut(s) 205
MalI GATC 4 cut(s) 221, 429, 612, 616
MboI GATC 4 cut(s) 219, 427, 610, 614
MboII GAAGA 1 cut(s) 547
MfeI CAATTG 1 cut(s) 306
MluCI AATT 3 cut(s) 78, 306, 413
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 6 cut(s) 109, 124, 181, 339, 364, 430
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 2 cut(s) 236, 270
MspR9I CCNGG 2 cut(s) 271, 467
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 6 cut(s) 95, 241, 272, 302, 325, 457
NciI CCSGG 1 cut(s) 271
NdeII GATC 4 cut(s) 219, 427, 610, 614
NlaIII CATG 6 cut(s) 23, 343, 422, 434, 553, 578
NlaIV GGNNCC 3 cut(s) 274, 471, 524
NspI RCATGY 1 cut(s) 578
PagI TCATGA 1 cut(s) 418
PciI ACATGT 1 cut(s) 574
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 2 cut(s) 268, 298
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PscI ACATGT 1 cut(s) 574
PshAI GACNNNNGTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 3 cut(s) 274, 471, 524
PspPI GGNCC 3 cut(s) 115, 273, 544
RsaI GTAC 2 cut(s) 287, 366
RsaNI GTAC 2 cut(s) 286, 365
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 267, 297
Sau3AI GATC 4 cut(s) 219, 427, 610, 614
Sau96I GGNCC 3 cut(s) 115, 273, 544
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 271, 467
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 3 cut(s) 78, 306, 413
SsiI CCGC 3 cut(s) 547, 605, 626
SspMI CTAG 5 cut(s) 59, 93, 119, 330, 479
StyD4I CCNGG 2 cut(s) 269, 465
StyI CCWWGG 2 cut(s) 58, 118
TaaI ACNGT 2 cut(s) 13, 522
TaqI TCGA 2 cut(s) 558, 613
TasI AATT 3 cut(s) 78, 306, 413
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 4 cut(s) 91, 111, 391, 505
TseI GCWGC 2 cut(s) 266, 296
TspDTI ATGAA 3 cut(s) 264, 407, 548
TspRI CASTG 4 cut(s) 91, 111, 391, 505
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 578
XmaJI CCTAGG 2 cut(s) 58, 118
XspI CTAG 5 cut(s) 59, 93, 119, 330, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.