Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007671.1

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Forward (+)

61652 .. 62077

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007671.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ctgtccaaaatccagagggtctaccatatccaaccgtttgggtgcacgattgcggtggaagagtccacctttagggtcattgcctacagagagaacgccagggacctgctcgacctgatgcctcagtcggttcctgtgctcgagaggcaggagatcctcacaatcgggaccgatatctggatgctcttcacaccttccagctcaactttgctggagaaggctttccgtgctcgggagattactcttctcaacccaatttggatacattcgagggtttccggcaagccgttttacgcgattttgcataggattgatgttggggttgtcattgatttggagcctactagaatagaggacccgactctgtctatagccagggtggtgcagtctcagaagctggccgtgagggagatttcgcagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

141

Amino Acids

16.14

Weight (kDa)

7.04

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	296
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	399
AfiI	CCNNNNNNNGG	3 cut(s)	72, 177, 232
AjnI	CCWGG	2 cut(s)	98, 374
AluBI	AGCT	3 cut(s)	201, 397, 421
AluI	AGCT	3 cut(s)	201, 397, 421
Alw21I	GWGCWC	3 cut(s)	47, 141, 232
Alw26I	GTCTC	1 cut(s)	393
Alw44I	GTGCAC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	2 cut(s)	140, 231
AoxI	GGCC	1 cut(s)	399
ApaLI	GTGCAC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	103, 168, 355
AvaI	CYCGRG	2 cut(s)	140, 231
AvaII	GGWCC	3 cut(s)	103, 168, 355
BaeGI	GKGCMC	1 cut(s)	47
Bbv12I	GWGCWC	3 cut(s)	47, 141, 232
BceAI	ACGGC	2 cut(s)	271, 386
BciT130I	CCWGG	2 cut(s)	100, 376
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	3 cut(s)	85, 369, 422
BfuAI	ACCTGC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	100, 376
Bme18I	GGWCC	3 cut(s)	103, 168, 355
BmeT110I	CYCGRG	2 cut(s)	140, 231
BmgT120I	GGNCC	3 cut(s)	103, 168, 355
BmiI	GGNNCC	5 cut(s)	104, 132, 169, 339, 357
BmrFI	CCNGG	2 cut(s)	100, 376
BmsI	GCATC	2 cut(s)	108, 171
BpmI	CTGGAG	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	99, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 177, 232
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	100, 376
BseDI	CCNNGG	2 cut(s)	99, 375
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	72, 177, 232
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	137, 404
BseSI	GKGCMC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	3 cut(s)	47, 141, 232
BsiHKCI	CYCGRG	2 cut(s)	140, 231
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	116, 181
BslI	CCNNNNNNNGG	3 cut(s)	72, 177, 232
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	116, 181
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	2 cut(s)	140, 231
Bsp1286I	GDGCHC	3 cut(s)	47, 141, 232
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	136, 403
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	5 cut(s)	104, 132, 169, 339, 357
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	99, 375
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	100, 376
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	3 cut(s)	54, 191, 249
BstC8I	GCNNGC	2 cut(s)	284, 399
BstDEI	CTNAG	2 cut(s)	123, 390
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 227
BstNI	CCWGG	2 cut(s)	100, 376
BstSCI	CCNGG	2 cut(s)	98, 374
BstSFI	CTRYAG	3 cut(s)	85, 369, 422
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	284, 399
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr13I	GGNCC	3 cut(s)	103, 168, 355
CviJI	RGCY	8 cut(s)	201, 221, 286, 340, 374, 397, 401, 421
CviKI_1	RGCY	8 cut(s)	201, 221, 286, 340, 374, 397, 401, 421
DdeI	CTNAG	2 cut(s)	123, 390
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	3 cut(s)	54, 191, 249
EarI	CTCTTC	3 cut(s)	54, 191, 249
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	103, 168, 355
Eco88I	CYCGRG	2 cut(s)	140, 231
EcoO109I	RGGNCCY	2 cut(s)	103, 355
EcoRII	CCWGG	2 cut(s)	98, 374
EcoRV	GATATC	1 cut(s)	175
FaiI	YATR	3 cut(s)	27, 306, 371
FaqI	GGGAC	2 cut(s)	116, 181
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	62, 361
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	3 cut(s)	22, 45, 66
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	5 cut(s)	13, 142, 166, 178, 233
Hpy8I	GTNNAC	3 cut(s)	22, 45, 66
HpyAV	CCTTC	2 cut(s)	204, 211
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	45, 304, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 227
HpyF3I	CTNAG	2 cut(s)	123, 390
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	337
LweI	GCATC	2 cut(s)	108, 171
MaeI	CTAG	1 cut(s)	345
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	3 cut(s)	71, 178, 236
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	3 cut(s)	47, 141, 232
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	71, 355
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	9, 132, 138, 167, 264, 346, 399
MroXI	GAANNNNTTC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	100, 376
MvaI	CCWGG	2 cut(s)	100, 376
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	145, 227
NdeII	GATC	1 cut(s)	153
NlaIV	GGNNCC	5 cut(s)	104, 132, 169, 339, 357
PaeR7I	CTCGAG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	70, 355
PpsI	GAGTC	2 cut(s)	70, 355
PpuMI	RGGWCCY	2 cut(s)	103, 355
Psp5II	RGGWCCY	2 cut(s)	103, 355
Psp6I	CCWGG	2 cut(s)	98, 374
PspGI	CCWGG	2 cut(s)	98, 374
PspN4I	GGNNCC	5 cut(s)	104, 132, 169, 339, 357
PspPI	GGNCC	3 cut(s)	103, 168, 355
PspPPI	RGGWCCY	2 cut(s)	103, 355
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	3 cut(s)	103, 168, 355
SchI	GAGTC	2 cut(s)	71, 355
ScrFI	CCNGG	2 cut(s)	100, 376
SduI	GDGCHC	3 cut(s)	47, 141, 232
SetI	ASST	7 cut(s)	71, 108, 117, 196, 203, 399, 423
SfaNI	GCATC	2 cut(s)	108, 171
SfcI	CTRYAG	3 cut(s)	85, 369, 422
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	3 cut(s)	103, 168, 355
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	98, 374
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	111, 141, 269
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	255
TseI	GCWGC	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	364
VneI	GTGCAC	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	103, 168, 355
XhoI	CTCGAG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.