Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348701.1

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1034

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

tttatgtgagaatgtcgtcttcaagacccagtcactcatccagcaattcagggagatcaaggcacactgctagagttattgctcagacaactgtagatgcaaagcttcatgcagattttgaggagtcgggcagttcctttgactactcgagctcagtgcgtgttagcagttcagttgctggggatcaacaacctaggtctgacaaagtgaccactgcttatctccatcacatacagaaagggaagttgatccagccatttggctgcttgctagccttagatgacaaaactttcagggtcattgcatacagtgagaatgcccctgaaatgctgactatggttagtcatgccgtcccaagtgttggggaccacccagttcttggcataggaacagatgtgagaacaattttcacaggccctagtgcctctgcattgcataaggccctcgggttcggggaggtttctctcttaaatcccatcttagtccattgcaagtcatctggaaagcctttctatgctatagtccaccgggtaacaggtagcctggtcattgattttgaaccggtgaagccttatgaagtccccatgactgctgctggagctctgcaatcatacaaacttgcagccaaagcaattgcacgattgcagtctttgcctagtgggagcctggagaggctttgtgatacaatggttcaagaggtttttgagctcactggttatgacagggtgatggcctataaatttcatgatgatgatcatggggaagttattgcagagcttacgaagcctggcctggagccatatctgggtttgcattatccatccactgatatacctcaagcttcacggttcctgtttatgaagaataaggtccgtatgattgttgactgtcgtgctaaaaatgtcaaggtccttcaagatgagaagcttcctttggatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

312

Amino Acids

34.19

Weight (kDa)

7.86

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	361, 379
AclWI	GGATC	2 cut(s)	191, 243
AcsI	RAATTY	1 cut(s)	739
AfiI	CCNNNNNNNGG	3 cut(s)	361, 379, 805
AgeI	ACCGGT	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	23, 559, 694, 916
AjnI	CCWGG	4 cut(s)	542, 665, 786, 791
AjuI	GAANNNNNNNTTGG	1 cut(s)	916
AluBI	AGCT	7 cut(s)	105, 152, 601, 708, 777, 841, 927
AluI	AGCT	7 cut(s)	105, 152, 601, 708, 777, 841, 927
Alw21I	GWGCWC	3 cut(s)	154, 603, 710
AlwI	GGATC	2 cut(s)	191, 243
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	2 cut(s)	147, 445
AoxI	GGCC	4 cut(s)	414, 440, 731, 789
ApeKI	GCWGC	3 cut(s)	263, 592, 622
ApoI	RAATTY	1 cut(s)	739
AsiGI	ACCGGT	1 cut(s)	561
AspA2I	CCTAGG	1 cut(s)	193
AspS9I	GGNCC	5 cut(s)	366, 415, 441, 870, 909
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	576, 738
AsuNHI	GCTAGC	1 cut(s)	270
AvaI	CYCGRG	2 cut(s)	147, 445
AvaII	GGWCC	3 cut(s)	366, 870, 909
AvrII	CCTAGG	1 cut(s)	193
BaeI	ACNNNNGTAYC	2 cut(s)	674, 707
BanII	GRGCYC	3 cut(s)	154, 603, 710
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	3 cut(s)	154, 603, 710
BbvI	GCAGC	3 cut(s)	250, 579, 634
BccI	CCATC	4 cut(s)	233, 484, 723, 828
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	4 cut(s)	544, 667, 788, 793
BclI	TGATCA	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	529
BfaI	CTAG	5 cut(s)	71, 194, 271, 419, 656
BfmI	CTRYAG	2 cut(s)	92, 518
BisI	GCNGC	3 cut(s)	264, 593, 623
BlnI	CCTAGG	1 cut(s)	193
BlsI	GCNGC	3 cut(s)	265, 594, 624
Bme1390I	CCNGG	5 cut(s)	529, 544, 667, 788, 793
Bme18I	GGWCC	3 cut(s)	366, 870, 909
BmeT110I	CYCGRG	2 cut(s)	147, 445
BmgT120I	GGNCC	5 cut(s)	366, 415, 441, 870, 909
BmiI	GGNNCC	4 cut(s)	367, 664, 797, 850
BmrFI	CCNGG	5 cut(s)	529, 544, 667, 788, 793
BmrI	ACTGGG	2 cut(s)	23, 367
BmsI	GCATC	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	274
BmuI	ACTGGG	2 cut(s)	23, 367
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	3 cut(s)	617, 688, 814
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	193, 444
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 379, 805
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	3 cut(s)	29, 373, 717
Bse3DI	GCAATG	3 cut(s)	299, 430, 486
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	4 cut(s)	544, 667, 788, 793
BseDI	CCNNGG	2 cut(s)	193, 444
BseGI	GGATG	2 cut(s)	37, 820
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	3 cut(s)	361, 379, 805
BseMI	GCAATG	3 cut(s)	299, 430, 486
BseMII	CTCAG	2 cut(s)	97, 167
BseNI	ACTGG	3 cut(s)	29, 373, 717
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	250, 579, 634
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	4 cut(s)	416, 442, 733, 791
BshTI	ACCGGT	1 cut(s)	561
BsiHKAI	GWGCWC	3 cut(s)	154, 603, 710
BsiHKCI	CYCGRG	2 cut(s)	147, 445
BsiSI	CCGG	2 cut(s)	528, 562
BslFI	GGGAC	3 cut(s)	337, 379, 565
BslI	CCNNNNNNNGG	3 cut(s)	361, 379, 805
BsmFI	GGGAC	3 cut(s)	337, 379, 565
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	416, 442, 733, 791
BsoBI	CYCGRG	2 cut(s)	147, 445
Bsp1286I	GDGCHC	3 cut(s)	154, 603, 710
Bsp143I	GATC	4 cut(s)	55, 183, 248, 753
BspANI	GGCC	4 cut(s)	416, 442, 733, 791
BspCNI	CTCAG	2 cut(s)	96, 166
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	4 cut(s)	367, 664, 797, 850
BspOI	GCTAGC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	191, 243
BsrDI	GCAATG	3 cut(s)	299, 430, 486
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	29, 373, 717
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	193, 444
BssMI	GATC	4 cut(s)	55, 183, 248, 753
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	4 cut(s)	544, 667, 788, 793
Bst4CI	ACNGT	4 cut(s)	93, 310, 848, 889
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	268, 272
BstDEI	CTNAG	4 cut(s)	83, 153, 276, 480
BstF5I	GGATG	2 cut(s)	37, 820
BstKTI	GATC	5 cut(s)	58, 186, 251, 756, 939
BstMBI	GATC	4 cut(s)	55, 183, 248, 753
BstMWI	GCNNNNNNNGC	4 cut(s)	598, 628, 651, 783
BstNI	CCWGG	4 cut(s)	544, 667, 788, 793
BstSCI	CCNGG	5 cut(s)	527, 542, 665, 786, 791
BstSFI	CTRYAG	2 cut(s)	92, 518
BstV1I	GCAGC	3 cut(s)	250, 579, 634
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	416, 442, 733, 791
BtsCI	GGATG	2 cut(s)	37, 820
BtsI	GCAGTG	2 cut(s)	65, 212
BtsIMutI	CAGTG	6 cut(s)	65, 161, 212, 315, 710, 824
Cac8I	GCNNGC	2 cut(s)	268, 272
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	744
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	5 cut(s)	366, 415, 441, 870, 909
CspAI	ACCGGT	1 cut(s)	561
CviAII	CATG	5 cut(s)	109, 346, 585, 745, 757
DdeI	CTNAG	4 cut(s)	83, 153, 276, 480
DpnI	GATC	5 cut(s)	57, 185, 250, 755, 938
DpnII	GATC	4 cut(s)	55, 183, 248, 753
Ecl136II	GAGCTC	3 cut(s)	152, 601, 708
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	154, 603, 710
Eco47I	GGWCC	3 cut(s)	366, 870, 909
Eco53kI	GAGCTC	3 cut(s)	152, 601, 708
Eco88I	CYCGRG	2 cut(s)	147, 445
EcoICRI	GAGCTC	3 cut(s)	152, 601, 708
EcoO109I	RGGNCCY	3 cut(s)	415, 441, 909
EcoRII	CCWGG	4 cut(s)	542, 665, 786, 791
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	3 cut(s)	154, 603, 710
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	112, 349, 588, 748, 760
FaqI	GGGAC	3 cut(s)	337, 379, 565
FatI	CATG	5 cut(s)	108, 345, 584, 744, 756
FbaI	TGATCA	1 cut(s)	753
Fnu4HI	GCNGC	3 cut(s)	264, 593, 623
FokI	GGATG	2 cut(s)	24, 807
FriOI	GRGCYC	3 cut(s)	154, 603, 710
Fsp4HI	GCNGC	3 cut(s)	264, 593, 623
FspBI	CTAG	5 cut(s)	71, 194, 271, 419, 656
GluI	GCNGC	3 cut(s)	264, 593, 623
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	3 cut(s)	617, 688, 814
HaeIII	GGCC	4 cut(s)	416, 442, 733, 791
HapII	CCGG	2 cut(s)	528, 562
Hin1II	CATG	5 cut(s)	112, 349, 588, 748, 760
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	3 cut(s)	103, 839, 925
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	528, 562
HphI	GGTGA	2 cut(s)	576, 738
Hpy166II	GTNNAC	2 cut(s)	525, 885
Hpy188I	TCNGA	2 cut(s)	86, 201
Hpy188III	TCNNGA	5 cut(s)	23, 500, 694, 745, 916
Hpy8I	GTNNAC	2 cut(s)	525, 885
HpyAV	CCTTC	1 cut(s)	922
HpyCH4III	ACNGT	4 cut(s)	93, 310, 848, 889
HpyF10VI	GCNNNNNNNGC	4 cut(s)	598, 628, 651, 783
HpyF3I	CTNAG	4 cut(s)	83, 153, 276, 480
Hsp92II	CATG	5 cut(s)	112, 349, 588, 748, 760
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	4 cut(s)	55, 183, 248, 753
LmnI	GCTCC	3 cut(s)	598, 662, 795
Lsp1109I	GCAGC	3 cut(s)	250, 579, 634
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	5 cut(s)	71, 194, 271, 419, 656
MaeIII	GTNAC	3 cut(s)	31, 207, 531
MalI	GATC	5 cut(s)	57, 185, 250, 755, 938
MboI	GATC	4 cut(s)	55, 183, 248, 753
MboII	GAAGA	2 cut(s)	11, 873
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	3 cut(s)	154, 603, 710
MluCI	AATT	4 cut(s)	45, 404, 632, 739
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	114, 435, 450, 454, 665, 690, 845
MseI	TTAA	1 cut(s)	469
MslI	CAYNNNNRTG	1 cut(s)	749
MspI	CCGG	2 cut(s)	528, 562
MspR9I	CCNGG	5 cut(s)	529, 544, 667, 788, 793
MunI	CAATTG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	4 cut(s)	544, 667, 788, 793
MwoI	GCNNNNNNNGC	4 cut(s)	598, 628, 651, 783
NciI	CCSGG	1 cut(s)	529
NdeII	GATC	4 cut(s)	55, 183, 248, 753
NheI	GCTAGC	1 cut(s)	270
NlaIII	CATG	5 cut(s)	112, 349, 588, 748, 760
NlaIV	GGNNCC	4 cut(s)	367, 664, 797, 850
NmuCI	GTSAC	2 cut(s)	31, 207
PaeR7I	CTCGAG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	744
PctI	GAATGC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	2 cut(s)	361, 379
PinAI	ACCGGT	1 cut(s)	561
PkrI	GCNGC	3 cut(s)	265, 594, 624
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	909
Psp124BI	GAGCTC	3 cut(s)	154, 603, 710
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	4 cut(s)	542, 665, 786, 791
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	4 cut(s)	542, 665, 786, 791
PspN4I	GGNNCC	4 cut(s)	367, 664, 797, 850
PspPI	GGNCC	5 cut(s)	366, 415, 441, 870, 909
PspPPI	RGGWCCY	1 cut(s)	909
PspXI	VCTCGAGB	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	749
SacI	GAGCTC	3 cut(s)	154, 603, 710
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	3 cut(s)	264, 593, 623
Sau3AI	GATC	4 cut(s)	55, 183, 248, 753
Sau96I	GGNCC	5 cut(s)	366, 415, 441, 870, 909
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	5 cut(s)	529, 544, 667, 788, 793
SduI	GDGCHC	3 cut(s)	154, 603, 710
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	92, 518
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	3 cut(s)	366, 870, 909
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	147, 836
SmoI	CTYRAG	2 cut(s)	147, 836
Sse9I	AATT	4 cut(s)	45, 404, 632, 739
SspMI	CTAG	5 cut(s)	71, 194, 271, 419, 656
SstI	GAGCTC	3 cut(s)	154, 603, 710
StyD4I	CCNGG	5 cut(s)	527, 542, 665, 786, 791
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	4 cut(s)	93, 310, 848, 889
TaqI	TCGA	1 cut(s)	148
TasI	AATT	4 cut(s)	45, 404, 632, 739
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TscAI	CASTG	6 cut(s)	72, 161, 219, 315, 717, 831
TseFI	GTSAC	2 cut(s)	31, 207
TseI	GCWGC	3 cut(s)	263, 592, 622
Tsp45I	GTSAC	2 cut(s)	31, 207
TspDTI	ATGAA	4 cut(s)	97, 590, 733, 874
TspGWI	ACGGA	1 cut(s)	862
TspRI	CASTG	6 cut(s)	72, 161, 219, 315, 717, 831
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	2 cut(s)	361, 379
VpaK11BI	GGWCC	3 cut(s)	366, 870, 909
XapI	RAATTY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	5 cut(s)	71, 194, 271, 419, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.