Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g19750 |
| malus_domestica | MD17G1116700.v1.1 |
| pyrus_communis | pycom04g16280 pycom10g22360 |
| rosa_chinensis | RchiOBHm_Chr2g0161111 |
| rosa_laevigata | RLG00000013469 RLG00000028069 |
| rosa_multiflora | Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001 |
| rosa_rugosa | Rorug04G0078700 |
| rosa_samantha | Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 104 |
| AcoI | YGGCCR | 1 cut(s) | 123 |
| AfaI | GTAC | 1 cut(s) | 239 |
| AluBI | AGCT | 5 cut(s) | 98, 121, 145, 175, 211 |
| AluI | AGCT | 5 cut(s) | 98, 121, 145, 175, 211 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 121 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApeKI | GCWGC | 2 cut(s) | 142, 145 |
| AspS9I | GGNCC | 1 cut(s) | 79 |
| AsuC2I | CCSGG | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| BbvI | GCAGC | 2 cut(s) | 132, 154 |
| BceAI | ACGGC | 1 cut(s) | 110 |
| BcnI | CCSGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| BfaI | CTAG | 2 cut(s) | 6, 69 |
| BfmI | CTRYAG | 1 cut(s) | 93 |
| BisI | GCNGC | 2 cut(s) | 143, 146 |
| BlsI | GCNGC | 2 cut(s) | 144, 147 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 1 cut(s) | 79 |
| BmiI | GGNNCC | 2 cut(s) | 63, 81 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BmrI | ACTGGG | 1 cut(s) | 225 |
| BmuI | ACTGGG | 1 cut(s) | 225 |
| BpuMI | CCSGG | 1 cut(s) | 159 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 227, 257 |
| Bse1I | ACTGG | 1 cut(s) | 220 |
| BseMII | CTCAG | 1 cut(s) | 128 |
| BseNI | ACTGG | 1 cut(s) | 220 |
| BseXI | GCAGC | 2 cut(s) | 132, 154 |
| BseYI | CCCAGC | 1 cut(s) | 98 |
| BsgI | GTGCAG | 1 cut(s) | 128 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BsiSI | CCGG | 1 cut(s) | 159 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsmI | GAATGC | 1 cut(s) | 17 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bsp143I | GATC | 1 cut(s) | 250 |
| BspACI | CCGC | 1 cut(s) | 104 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 127 |
| BspHI | TCATGA | 1 cut(s) | 247 |
| BspLI | GGNNCC | 2 cut(s) | 63, 81 |
| BsrI | ACTGG | 1 cut(s) | 220 |
| BssMI | GATC | 1 cut(s) | 250 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 154 |
| BstC8I | GCNNGC | 2 cut(s) | 66, 123 |
| BstDEI | CTNAG | 2 cut(s) | 29, 114 |
| BstKTI | GATC | 1 cut(s) | 253 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMBI | GATC | 1 cut(s) | 250 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 154 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstSFI | CTRYAG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 2 cut(s) | 132, 154 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BtsI | GCAGTG | 1 cut(s) | 152 |
| BtsIMutI | CAGTG | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 2 cut(s) | 66, 123 |
| CaiI | CAGNNNCTG | 1 cut(s) | 121 |
| CciI | TCATGA | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 1 cut(s) | 79 |
| Csp6I | GTAC | 1 cut(s) | 238 |
| CviAII | CATG | 2 cut(s) | 187, 248 |
| CviJI | RGCY | 7 cut(s) | 64, 98, 121, 125, 145, 175, 211 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 98, 121, 125, 145, 175, 211 |
| CviQI | GTAC | 1 cut(s) | 238 |
| DdeI | CTNAG | 2 cut(s) | 29, 114 |
| DpnI | GATC | 1 cut(s) | 252 |
| DpnII | GATC | 1 cut(s) | 250 |
| EaeI | YGGCCR | 1 cut(s) | 123 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| EcoO109I | RGGNCCY | 1 cut(s) | 79 |
| FaeI | CATG | 2 cut(s) | 190, 251 |
| FaiI | YATR | 5 cut(s) | 95, 188, 222, 233, 249 |
| FatI | CATG | 2 cut(s) | 186, 247 |
| Fnu4HI | GCNGC | 2 cut(s) | 143, 146 |
| Fsp4HI | GCNGC | 2 cut(s) | 143, 146 |
| FspBI | CTAG | 2 cut(s) | 6, 69 |
| GluI | GCNGC | 2 cut(s) | 143, 146 |
| GsaI | CCCAGC | 1 cut(s) | 102 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 159 |
| Hin1II | CATG | 2 cut(s) | 190, 251 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HpaII | CCGG | 1 cut(s) | 159 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 1 cut(s) | 248 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 2 cut(s) | 109, 148 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 154 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 114 |
| Hsp92II | CATG | 2 cut(s) | 190, 251 |
| Kzo9I | GATC | 1 cut(s) | 250 |
| LmnI | GCTCC | 2 cut(s) | 61, 208 |
| LpnPI | CCDG | 5 cut(s) | 78, 84, 107, 172, 201 |
| Lsp1109I | GCAGC | 2 cut(s) | 132, 154 |
| MaeI | CTAG | 2 cut(s) | 6, 69 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 1 cut(s) | 252 |
| MboI | GATC | 1 cut(s) | 250 |
| MboII | GAAGA | 1 cut(s) | 17 |
| MnlI | CCTC | 4 cut(s) | 70, 123, 198, 248 |
| MseI | TTAA | 2 cut(s) | 17, 171 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| MspA1I | CMGCKG | 1 cut(s) | 145 |
| MspI | CCGG | 1 cut(s) | 159 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| Mva1269I | GAATGC | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 154 |
| NciI | CCSGG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 250 |
| NlaIII | CATG | 2 cut(s) | 190, 251 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 81 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| PagI | TCATGA | 1 cut(s) | 247 |
| PctI | GAATGC | 1 cut(s) | 17 |
| PflFI | GACNNNGTC | 1 cut(s) | 88 |
| PkrI | GCNGC | 2 cut(s) | 144, 147 |
| PpuMI | RGGWCCY | 1 cut(s) | 79 |
| Psp5II | RGGWCCY | 1 cut(s) | 79 |
| PspFI | CCCAGC | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 81 |
| PspPI | GGNCC | 1 cut(s) | 79 |
| PspPPI | RGGWCCY | 1 cut(s) | 79 |
| PstNI | CAGNNNCTG | 1 cut(s) | 121 |
| PsyI | GACNNNGTC | 1 cut(s) | 88 |
| PvuII | CAGCTG | 1 cut(s) | 145 |
| RsaI | GTAC | 1 cut(s) | 239 |
| RsaNI | GTAC | 1 cut(s) | 238 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SaqAI | TTAA | 2 cut(s) | 17, 171 |
| SatI | GCNGC | 2 cut(s) | 143, 146 |
| Sau3AI | GATC | 1 cut(s) | 250 |
| Sau96I | GGNCC | 1 cut(s) | 79 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SetI | ASST | 5 cut(s) | 100, 123, 147, 177, 213 |
| SfcI | CTRYAG | 1 cut(s) | 93 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| SsiI | CCGC | 1 cut(s) | 104 |
| SspMI | CTAG | 2 cut(s) | 6, 69 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaqI | TCGA | 1 cut(s) | 253 |
| TatI | WGTACW | 1 cut(s) | 237 |
| Tru1I | TTAA | 2 cut(s) | 17, 171 |
| Tru9I | TTAA | 2 cut(s) | 17, 171 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| TseI | GCWGC | 2 cut(s) | 142, 145 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| TspDTI | ATGAA | 1 cut(s) | 236 |
| TspRI | CASTG | 1 cut(s) | 159 |
| Tth111I | GACNNNGTC | 1 cut(s) | 88 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XspI | CTAG | 2 cut(s) | 6, 69 |