pycom10g22360

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006929
Physical Location & Seq
Forward (+)
24750053 .. 24750982
930 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g22360.1

Sequence Viewer

Length: 930 bp
ATGGAGCTTGGCAAAAGCAGCAACAGAACACGCGCCGCCGCATTCTCCTCCTCCTCCGCCACGAGCAACATGAAACCCACCCCCGCGGCCGCCAAACCCGACAGGTCAATCGCTCACTACAGAGAGGACGCCAACCTCTTGGCCGAGTACGAGCAATCTGCCGTCTCCGGTACGTCCTTCCACTACACAAGGTCAGTGCTTTTTCCTCCGGATTCTGTTCCCGAGGAGCAAATCGTTGCCTACCTTTCGAGAATCCAAAGGGGTTCTCTCGTCCAATCCTTTGGCTGTATGCTTGCAATTAAAGAACCCACTTTTCGAATTATCGGTTTTAGTGAGAATTGCTTTGAATTGCTGGGTCTGGATAAATCGGGAAGTGTTTTCGGGTCAAATGAGTTAAAGGGTTTGATTGGGATTGACTGTAGAACTCTGTTTACTCCTTCTTCCGCGGCTTCTTTGGCGAAAGCTGCTGCTTCGAGGGAGATTTCGCTGTTAAACCCGGTTTGGGTGTATTCTAAGAGCACCCAGAAGCCATTTTATGCTATTTTGCATAGAATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCTAGGTCTGGTGATCCTGCATTGTCACTTGCAGGAGCTGTGCAGTCTCAGAAACTCGCGGTTCGCGCAATTTCTAGGCTTCAGTCTCTCCCTGGAGGGGATATTGGCGTGTTGTGCGATACTGTTGTGGAGGATGTTCAGAAGCTTACTGGATATGACAGAGTTATGGTTTATAAGTTCCATGACGATGATCACGGTGAGGTTGTGTCTGAAATCAGAAGGTCGGATTTGGAGTCTTATTTGGGTTTGCATTATCCTGCCACGGATATCCCCCAAGCTGCCCGTTTCTTGTTCAAGCAGAATCACGTGCGTATCGATCTGCGATTGCAATGTGAATCCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

310

Amino Acids

33.78

Weight (kDa)

6.4

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 80 - 196 4.8e-34 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AccII CGCG 5 cut(s) 33, 86, 446, 644, 651
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 9 cut(s) 36, 39, 57, 84, 86, 90, 444, 446, 644
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 87, 141
AcuI CTGAAG 1 cut(s) 650
AcvI CACGTG 1 cut(s) 892
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 149, 172
AfiI CCNNNNNNNGG 2 cut(s) 502, 682
AgsI TTSAA 2 cut(s) 347, 880
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 5 cut(s) 7, 464, 623, 730, 863
AluI AGCT 5 cut(s) 7, 464, 623, 730, 863
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 169, 636, 675
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 87, 141
ApeKI GCWGC 4 cut(s) 18, 464, 467, 863
AspLEI GCGC 2 cut(s) 35, 653
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 608, 794
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 221
BaeI ACNNNNGTAYC 4 cut(s) 696, 729, 880, 913
BauI CACGAG 1 cut(s) 61
BbrPI CACGTG 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 4 cut(s) 30, 451, 454, 850
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 3 cut(s) 169, 636, 675
BfaI CTAG 2 cut(s) 588, 660
BfmI CTRYAG 2 cut(s) 118, 418
BisI GCNGC 9 cut(s) 19, 36, 39, 87, 90, 447, 465, 468, 864
BlsI GCNGC 9 cut(s) 20, 37, 40, 88, 91, 448, 466, 469, 865
Bme1390I CCNGG 2 cut(s) 497, 678
BmeT110I CYCGRG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 2 cut(s) 497, 678
BpmI CTGGAG 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 900
BsaAI YACGTR 1 cut(s) 892
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 5 cut(s) 84, 222, 444, 676, 846
BsaWI WCCGGW 3 cut(s) 167, 208, 923
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 682
Bse1I ACTGG 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 920
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 5 cut(s) 84, 222, 444, 676, 846
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 2 cut(s) 502, 682
BseMI GCAATG 1 cut(s) 920
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 4 cut(s) 37, 40, 43, 239
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 4 cut(s) 30, 451, 454, 850
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 647
Bsh1236I CGCG 5 cut(s) 33, 86, 446, 644, 651
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 89, 143
BshVI ATCGAT 1 cut(s) 900
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 168, 209, 497, 924
BslI CCNNNNNNNGG 2 cut(s) 502, 682
BsmAI GTCTC 3 cut(s) 169, 636, 675
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 2 cut(s) 89, 143
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 521
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 598, 775, 901
BspACI CCGC 9 cut(s) 36, 39, 57, 84, 86, 90, 444, 446, 644
BspANI GGCC 2 cut(s) 89, 143
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 900
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 5 cut(s) 33, 86, 446, 644, 651
BspLI GGNNCC 1 cut(s) 582
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 920
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 5 cut(s) 84, 222, 444, 676, 846
BssMI GATC 3 cut(s) 598, 775, 901
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 3 cut(s) 419, 709, 782
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 892
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 294, 585
BstDEI CTNAG 2 cut(s) 513, 633
BstDSI CCRYGG 3 cut(s) 84, 444, 846
BstF5I GGATG 1 cut(s) 724
BstFNI CGCG 5 cut(s) 33, 86, 446, 644, 651
BstHHI GCGC 2 cut(s) 35, 653
BstKTI GATC 3 cut(s) 601, 778, 904
BstMAI GTCTC 3 cut(s) 169, 636, 675
BstMBI GATC 3 cut(s) 598, 775, 901
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 18, 455, 464, 650, 699
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 495, 676
BstSFI CTRYAG 2 cut(s) 118, 418
BstUI CGCG 5 cut(s) 33, 86, 446, 644, 651
BstV1I GCAGC 4 cut(s) 30, 451, 454, 850
BstXI CCANNNNNNTGG 2 cut(s) 139, 281
BstZI CGGCCG 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 2 cut(s) 89, 143
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 3 cut(s) 84, 444, 846
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 294, 585
CaiI CAGNNNCTG 1 cut(s) 623
CciNI GCGGCCGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 35, 653
Cfr42I CCGCGG 2 cut(s) 87, 447
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 148, 171
CviAII CATG 2 cut(s) 70, 767
CviQI GTAC 2 cut(s) 148, 171
DdeI CTNAG 2 cut(s) 513, 633
DpnI GATC 3 cut(s) 600, 777, 903
DpnII GATC 3 cut(s) 598, 775, 901
EaeI YGGCCR 2 cut(s) 87, 141
EagI CGGCCG 1 cut(s) 87
EciI GGCGGA 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 87
Eco32I GATATC 1 cut(s) 853
Eco52I CGGCCG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 650
Eco72I CACGTG 1 cut(s) 892
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 676
EcoRV GATATC 1 cut(s) 853
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 73, 770
FaiI YATR 8 cut(s) 71, 290, 537, 549, 741, 752, 759, 768
FatI CATG 2 cut(s) 69, 766
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 9 cut(s) 19, 36, 39, 87, 90, 447, 465, 468, 864
FokI GGATG 1 cut(s) 731
Fsp4HI GCNGC 9 cut(s) 19, 36, 39, 87, 90, 447, 465, 468, 864
FspBI CTAG 2 cut(s) 588, 660
GlaI GCGC 2 cut(s) 34, 652
GluI GCNGC 9 cut(s) 19, 36, 39, 87, 90, 447, 465, 468, 864
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 2 cut(s) 89, 143
HapII CCGG 4 cut(s) 168, 209, 497, 924
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 35, 653
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 73, 770
Hin6I GCGC 2 cut(s) 33, 651
HinP1I GCGC 2 cut(s) 33, 651
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 5 cut(s) 212, 252, 818, 886, 920
HpaII CCGG 4 cut(s) 168, 209, 497, 924
HphI GGTGA 2 cut(s) 608, 794
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 5 cut(s) 636, 726, 796, 803, 811
Hpy188III TCNNGA 5 cut(s) 209, 221, 249, 359, 369
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 3 cut(s) 187, 447, 798
HpyCH4III ACNGT 3 cut(s) 419, 709, 782
HpyCH4IV ACGT 2 cut(s) 173, 891
HpyCH4V TGCA 7 cut(s) 296, 547, 605, 617, 628, 835, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 455, 464, 650, 699
HpyF3I CTNAG 2 cut(s) 513, 633
HpySE526I ACGT 2 cut(s) 173, 891
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 73, 770
HspAI GCGC 2 cut(s) 33, 651
Kpn2I TCCGGA 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 2 cut(s) 87, 447
Kzo9I GATC 3 cut(s) 598, 775, 901
LmnI GCTCC 4 cut(s) 4, 226, 580, 620
Lsp1109I GCAGC 4 cut(s) 30, 451, 454, 850
MaeI CTAG 2 cut(s) 588, 660
MaeII ACGT 2 cut(s) 173, 891
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 600, 777, 903
MboI GATC 3 cut(s) 598, 775, 901
MboII GAAGA 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 6 cut(s) 297, 318, 337, 347, 552, 654
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 789
MroI TCCGGA 1 cut(s) 208
MseI TTAA 4 cut(s) 300, 395, 491, 928
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 86, 446
MspI CCGG 4 cut(s) 168, 209, 497, 924
MspR9I CCNGG 2 cut(s) 497, 678
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 5 cut(s) 33, 86, 446, 644, 651
MwoI GCNNNNNNNGC 5 cut(s) 18, 455, 464, 650, 699
NciI CCSGG 1 cut(s) 497
NdeII GATC 3 cut(s) 598, 775, 901
NlaIII CATG 2 cut(s) 73, 770
NlaIV GGNNCC 1 cut(s) 582
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 609
NotI GCGGCCGC 1 cut(s) 87
NspV TTCGAA 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 4 cut(s) 212, 252, 886, 920
PkrI GCNGC 9 cut(s) 20, 37, 40, 88, 91, 448, 466, 469, 865
PleI GAGTC 1 cut(s) 826
PmaCI CACGTG 1 cut(s) 892
PmlI CACGTG 1 cut(s) 892
PpsI GAGTC 1 cut(s) 826
Ppu21I YACGTR 1 cut(s) 892
PsiI TTATAA 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 676
PspCI CACGTG 1 cut(s) 892
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 1 cut(s) 582
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PstNI CAGNNNCTG 1 cut(s) 623
RsaI GTAC 2 cut(s) 149, 172
RsaNI GTAC 2 cut(s) 148, 171
RseI CAYNNNNRTG 1 cut(s) 771
SacII CCGCGG 2 cut(s) 87, 447
SaqAI TTAA 4 cut(s) 300, 395, 491, 928
SatI GCNGC 9 cut(s) 19, 36, 39, 87, 90, 447, 465, 468, 864
Sau3AI GATC 3 cut(s) 598, 775, 901
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 2 cut(s) 497, 678
SduI GDGCHC 1 cut(s) 521
SfcI CTRYAG 2 cut(s) 118, 418
Sfr303I CCGCGG 2 cut(s) 87, 447
SfuI TTCGAA 1 cut(s) 316
SgrBI CCGCGG 2 cut(s) 87, 447
SmiMI CAYNNNNRTG 1 cut(s) 771
Sse9I AATT 6 cut(s) 297, 318, 337, 347, 552, 654
SsiI CCGC 9 cut(s) 36, 39, 57, 84, 86, 90, 444, 446, 644
SspMI CTAG 2 cut(s) 588, 660
StyD4I CCNGG 2 cut(s) 495, 676
TaaI ACNGT 3 cut(s) 419, 709, 782
TaiI ACGT 2 cut(s) 176, 894
TaqI TCGA 4 cut(s) 248, 316, 473, 900
TasI AATT 6 cut(s) 297, 318, 337, 347, 552, 654
TauI GCSGC 5 cut(s) 38, 41, 89, 92, 449
TfiI GAWTC 4 cut(s) 212, 252, 886, 920
Tru1I TTAA 4 cut(s) 300, 395, 491, 928
Tru9I TTAA 4 cut(s) 300, 395, 491, 928
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 4 cut(s) 18, 464, 467, 863
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 1 cut(s) 201
XspI CTAG 2 cut(s) 588, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.