Prupe.1G064800_v2.0.a1

Biotin carboxylase 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
4603379 .. 4609802
6424 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G064800.5

Sequence Viewer

Length: 1572 bp
ATGGATGCCATAATGCCCATTTGCAAGACTGTAACTCCAAGTCCTGGCTTATTTTTTGGGAAAACTAGAGAGATACGGAGTTCCAAATGTAGCTTTATGGTGGGAAATAAAGTCAACTTTTTAAGGCAGAGAGCTCAGGGTGCTCAAGTTAGTTTCAAATCCAGGAAGCATGGGGGAGCTCTCCATGCTACATGTCGAGCTGAAAAAATTCTGGTGGCAAATAGAGGAGAAATTGCTGTTCGCATTATTCGAACTGCCCATGAGATGGGAATACCTTGTGTGGCTGTTTACTCAACAATAGACAAGGACGCACTTCATGTGAAATTGGCTGATGAATCAGTTTGTATTGGTGAAGCAGCAAGCAGTCAGTCGTACTTGGTTGTTCCAAATGTTTTATCTGCTGCTATCAGTCGGAAATGTACAATGCTGCATCCCGGATATGGTTTCCTGGCTGAGAATGCATCATTTGTTGAAATGTGCAGAGAACACGGAATCAACTTTATTGGGCCTAAGCCTGACAGCATCCGTGTTATGGGTGATAAATCGACTGCCAGAGACACAATGAAGAAAGCAGGTGTTCCAACTGTACCAGGAAGTGATGGATTACTAGAGAGCACAGAAGAAGGAATCAGGCTTGCCGATGAGATTGGCTTTCCTGTTATGATCAAGGCAACAGCAGGAGGCGGAGGACGTGGCATGCGTCTTGCTAAAGAACCTGAAGAGTTTGTGAAGTTGTTACAGCAAGCAAAGAGTGAGGCTGCAGCTGCTTTTGGAAATGATGGAGTTTATTTGGAAAAGTACATCCAAAATCCTAGACACATTGAATTTCAGGTTCTTGCAGATAAATATGGTAATGTTGTTCACTTTGGAGAGCGGGATTGCAGTATCCAGAGAAGGAACCAAAAGCTGCTGGAAGAAGCACCCTCCCCCGCATTGACCCCAGAATTGCGTAAAGCTATGGGTGATGCAGCAGTTGCTGCAGCAGCATCAATTGGTTACATTGGTGTTGGAACCGTTGAATTCCTTTTGGATGAAAGAGGCACCTTTTACTTCATGGAAATGAACACACGTATTCAGGTTGAGCATCCTGTGACAGAGATGATTTCCTCTGTTGACTTGATTGAAGAACAAATTCGTGTAGCTATGGGAGAAAAACTTCGATACTCACAGGATGAGATAGTGCTCAGAGGACACTCAATTGAATGTCGTATCAATGCAGAAGATGCTTTTAAAGGATTCCGACCTGGGCCAGGAAGAATAACTGCCTACTTACCATCTGGAGGTCCCTTTGTTAGAATGGATAGCCATGTTTATCCTGATTATGTGGTTCCTCCAAACTATGATTCCCTTCTTGGAAAGCTTATTGTTTGGGCACCAACAAGAGAAAAGGCAATTGAACGAATGAAGAGGGCTCTTGACGACACTATTATAACAGGGGTTCCCACAACCATTGAATATCATAAACTTATCCTTGATATAGAGGATTTCAAAAATGGGAAGGTTGATACCGCTTTTATTCCAAAGCACGAAGAGGAGCTCGCCGCGCCCCAACATTTGGTGCTAAAGAACTAG
Functional Annotation

Protein Analysis

524

Amino Acids

57.55

Weight (kDa)

6.93

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1430
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 1040, 1372
AccB7I CCANNNNNTGG 3 cut(s) 44, 265, 1555
AccBSI CCGCTC 1 cut(s) 874
AccII CGCG 1 cut(s) 1544
AciI CCGC 5 cut(s) 684, 874, 930, 1509, 1542
AcsI RAATTY 4 cut(s) 207, 824, 1019, 1131
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 4 cut(s) 374, 421, 588, 800
AfiI CCNNNNNNNGG 7 cut(s) 44, 265, 440, 532, 1250, 1280, 1555
AflIII ACRYGT 2 cut(s) 191, 1067
AgsI TTSAA 9 cut(s) 157, 473, 824, 1019, 1124, 1202, 1397, 1454, 1489
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 6 cut(s) 43, 161, 447, 589, 1243, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 1327, 1359
Alw21I GWGCWC 6 cut(s) 136, 145, 181, 617, 1185, 1539
Alw26I GTCTC 1 cut(s) 549
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 2 cut(s) 506, 1247
ApoI RAATTY 4 cut(s) 207, 824, 1019, 1131
Asp700I GAANNNNTTC 3 cut(s) 207, 1131, 1155
AspLEI GCGC 1 cut(s) 1546
AspS9I GGNCC 3 cut(s) 506, 1247, 1283
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 362, 548, 974
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 1283
BaeGI GKGCMC 1 cut(s) 1375
BanI GGYRCC 2 cut(s) 1040, 1372
BanII GRGCYC 4 cut(s) 136, 181, 1414, 1539
Bbv12I GWGCWC 6 cut(s) 136, 145, 181, 617, 1185, 1539
BccI CCATC 4 cut(s) 259, 593, 773, 1282
BciT130I CCWGG 6 cut(s) 45, 163, 449, 591, 1245, 1251
BciVI GTATCC 1 cut(s) 896
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 4 cut(s) 66, 608, 813, 1570
BfmI CTRYAG 2 cut(s) 759, 978
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 896
Bme1390I CCNGG 7 cut(s) 45, 163, 435, 449, 591, 1245, 1251
Bme18I GGWCC 1 cut(s) 1283
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 3 cut(s) 506, 1247, 1283
BmiI GGNNCC 7 cut(s) 899, 1012, 1042, 1285, 1329, 1374, 1440
BmrFI CCNGG 7 cut(s) 45, 163, 435, 449, 591, 1245, 1251
BmsI GCATC 7 cut(s) 439, 470, 531, 955, 995, 1093, 1213
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 2 cut(s) 135, 510
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 1070
BsaJI CCNNGG 1 cut(s) 1244
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 265, 440, 532, 1250, 1280, 1555
BseBI CCWGG 6 cut(s) 45, 163, 449, 591, 1245, 1251
BseDI CCNNGG 1 cut(s) 1244
BseGI GGATG 7 cut(s) 10, 430, 522, 801, 1036, 1084, 1177
BseLI CCNNNNNNNGG 7 cut(s) 44, 265, 440, 532, 1250, 1280, 1555
BseMII CTCAG 3 cut(s) 149, 444, 1198
BseRI GAGGAG 2 cut(s) 240, 1547
BseSI GKGCMC 1 cut(s) 1375
BsgI GTGCAG 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 1544
BshFI GGCC 2 cut(s) 508, 1249
BshNI GGYRCC 2 cut(s) 1040, 1372
BsiHKAI GWGCWC 6 cut(s) 136, 145, 181, 617, 1185, 1539
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 1269
BslI CCNNNNNNNGG 7 cut(s) 44, 265, 440, 532, 1250, 1280, 1555
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 1269
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 2 cut(s) 508, 1249
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 8 cut(s) 136, 145, 181, 617, 1185, 1375, 1414, 1539
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 1 cut(s) 663
BspACI CCGC 5 cut(s) 684, 874, 930, 1509, 1542
BspANI GGCC 2 cut(s) 508, 1249
BspCNI CTCAG 3 cut(s) 148, 445, 1197
BspFNI CGCG 1 cut(s) 1544
BspLI GGNNCC 7 cut(s) 899, 1012, 1042, 1285, 1329, 1374, 1440
BspMAI CTGCAG 2 cut(s) 763, 982
BspMI ACCTGC 1 cut(s) 563
BspT104I TTCGAA 1 cut(s) 250
BspT107I GGYRCC 2 cut(s) 1040, 1372
BsrBI CCGCTC 1 cut(s) 874
BsrGI TGTACA 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 1244
BssMI GATC 1 cut(s) 663
Bst2UI CCWGG 6 cut(s) 45, 163, 449, 591, 1245, 1251
Bst4CI ACNGT 3 cut(s) 31, 586, 1015
Bst6I CTCTTC 3 cut(s) 714, 1400, 1524
BstAPI GCANNNNNTGC 3 cut(s) 974, 977, 1223
BstAUI TGTACA 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 1070
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 5 cut(s) 361, 636, 698, 744, 1539
BstDEI CTNAG 4 cut(s) 135, 453, 510, 1184
BstENI CCTNNNNNAGG 1 cut(s) 1248
BstF5I GGATG 7 cut(s) 10, 430, 522, 801, 1036, 1084, 1177
BstFNI CGCG 1 cut(s) 1544
BstHHI GCGC 1 cut(s) 1546
BstKTI GATC 1 cut(s) 666
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 1 cut(s) 663
BstMWI GCNNNNNNNGC 9 cut(s) 140, 185, 458, 764, 974, 977, 983, 1223, 1543
BstNI CCWGG 6 cut(s) 45, 163, 449, 591, 1245, 1251
BstNSI RCATGY 2 cut(s) 195, 700
BstSCI CCNGG 7 cut(s) 43, 161, 433, 447, 589, 1243, 1249
BstSFI CTRYAG 2 cut(s) 759, 978
BstSLI GKGCMC 1 cut(s) 1375
BstUI CGCG 1 cut(s) 1544
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 2 cut(s) 508, 1249
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 7 cut(s) 10, 430, 522, 801, 1036, 1084, 1177
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 5 cut(s) 361, 636, 698, 744, 1539
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 1 cut(s) 1546
Cfr13I GGNCC 3 cut(s) 506, 1247, 1283
CseI GACGC 2 cut(s) 317, 689
Csp6I GTAC 4 cut(s) 373, 420, 587, 799
CspCI CAANNNNNGTGG 2 cut(s) 1432, 1467
CviAII CATG 8 cut(s) 170, 185, 192, 260, 317, 697, 1054, 1307
CviQI GTAC 4 cut(s) 373, 420, 587, 799
DdeI CTNAG 4 cut(s) 135, 453, 510, 1184
DpnI GATC 1 cut(s) 665
DpnII GATC 1 cut(s) 663
DraI TTTAAA 1 cut(s) 1231
Eam1104I CTCTTC 3 cut(s) 714, 1400, 1524
EarI CTCTTC 3 cut(s) 714, 1400, 1524
EciI GGCGGA 1 cut(s) 699
Ecl136II GAGCTC 3 cut(s) 134, 179, 1537
Eco24I GRGCYC 4 cut(s) 136, 181, 1414, 1539
Eco47I GGWCC 1 cut(s) 1283
Eco53kI GAGCTC 3 cut(s) 134, 179, 1537
Eco57I CTGAAG 1 cut(s) 738
EcoICRI GAGCTC 3 cut(s) 134, 179, 1537
EcoNI CCTNNNNNAGG 1 cut(s) 1248
EcoO109I RGGNCCY 1 cut(s) 1283
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 6 cut(s) 43, 161, 447, 589, 1243, 1249
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 4 cut(s) 136, 181, 1414, 1539
FaeI CATG 8 cut(s) 173, 188, 195, 263, 320, 700, 1057, 1310
FaqI GGGAC 1 cut(s) 1269
FatI CATG 8 cut(s) 169, 184, 191, 259, 316, 696, 1053, 1306
FauI CCCGC 2 cut(s) 867, 937
FbaI TGATCA 1 cut(s) 663
FokI GGATG 7 cut(s) 17, 417, 509, 788, 1043, 1071, 1184
FriOI GRGCYC 4 cut(s) 136, 181, 1414, 1539
FspBI CTAG 4 cut(s) 66, 608, 813, 1570
GlaI GCGC 1 cut(s) 1545
GsuI CTGGAG 1 cut(s) 1299
HaeIII GGCC 2 cut(s) 508, 1249
HapII CCGG 1 cut(s) 435
HgaI GACGC 2 cut(s) 317, 689
HhaI GCGC 1 cut(s) 1546
Hin1II CATG 8 cut(s) 173, 188, 195, 263, 320, 700, 1057, 1310
Hin6I GCGC 1 cut(s) 1544
HinP1I GCGC 1 cut(s) 1544
HincII GTYRAC 2 cut(s) 115, 1114
HindII GTYRAC 2 cut(s) 115, 1114
HindIII AAGCTT 1 cut(s) 1358
HinfI GANTC 5 cut(s) 335, 492, 627, 1236, 1343
HpaII CCGG 1 cut(s) 435
HphI GGTGA 3 cut(s) 362, 548, 974
Hpy166II GTNNAC 4 cut(s) 115, 289, 862, 1114
Hpy188I TCNGA 3 cut(s) 414, 1187, 1241
Hpy188III TCNNGA 4 cut(s) 889, 1278, 1316, 1415
Hpy8I GTNNAC 4 cut(s) 115, 289, 862, 1114
HpyAV CCTTC 4 cut(s) 617, 888, 1358, 1492
HpyCH4III ACNGT 3 cut(s) 31, 586, 1015
HpyCH4IV ACGT 2 cut(s) 691, 1069
HpyF10VI GCNNNNNNNGC 9 cut(s) 140, 185, 458, 764, 974, 977, 983, 1223, 1543
HpyF3I CTNAG 4 cut(s) 135, 453, 510, 1184
HpySE526I ACGT 2 cut(s) 691, 1069
Hsp92II CATG 8 cut(s) 173, 188, 195, 263, 320, 700, 1057, 1310
HspAI GCGC 1 cut(s) 1544
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 1 cut(s) 663
LmnI GCTCC 2 cut(s) 176, 1534
LweI GCATC 7 cut(s) 439, 470, 531, 955, 995, 1093, 1213
MaeI CTAG 4 cut(s) 66, 608, 813, 1570
MaeII ACGT 2 cut(s) 691, 1069
MaeIII GTNAC 4 cut(s) 31, 735, 995, 1090
MalI GATC 1 cut(s) 665
MbiI CCGCTC 1 cut(s) 874
MboI GATC 1 cut(s) 663
MboII GAAGA 9 cut(s) 577, 632, 731, 926, 1136, 1232, 1266, 1417, 1541
MfeI CAATTG 3 cut(s) 990, 1197, 1392
MhlI GDGCHC 8 cut(s) 136, 145, 181, 617, 1185, 1375, 1414, 1539
MmeI TCCRAC 4 cut(s) 392, 605, 988, 1264
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 3 cut(s) 207, 1131, 1155
MseI TTAA 2 cut(s) 122, 1230
MslI CAYNNNNRTG 1 cut(s) 1058
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 7 cut(s) 45, 163, 435, 449, 591, 1245, 1251
MunI CAATTG 3 cut(s) 990, 1197, 1392
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 6 cut(s) 45, 163, 449, 591, 1245, 1251
MvnI CGCG 1 cut(s) 1544
MwoI GCNNNNNNNGC 9 cut(s) 140, 185, 458, 764, 974, 977, 983, 1223, 1543
NciI CCSGG 1 cut(s) 435
NdeII GATC 1 cut(s) 663
NlaIII CATG 8 cut(s) 173, 188, 195, 263, 320, 700, 1057, 1310
NlaIV GGNNCC 7 cut(s) 899, 1012, 1042, 1285, 1329, 1374, 1440
NmuCI GTSAC 1 cut(s) 1090
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 2 cut(s) 195, 700
NspV TTCGAA 1 cut(s) 250
PaeI GCATGC 1 cut(s) 700
PaqCI CACCTGC 1 cut(s) 563
PciI ACATGT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 247, 697
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 3 cut(s) 207, 1131, 1155
PfeI GAWTC 5 cut(s) 335, 492, 627, 1236, 1343
PflMI CCANNNNNTGG 3 cut(s) 44, 265, 1555
PfoI TCCNGGA 2 cut(s) 161, 433
Ppu21I YACGTR 1 cut(s) 1070
PpuMI RGGWCCY 1 cut(s) 1283
PscI ACATGT 1 cut(s) 191
PsiI TTATAA 1 cut(s) 1430
Psp124BI GAGCTC 3 cut(s) 136, 181, 1539
Psp5II RGGWCCY 1 cut(s) 1283
Psp6I CCWGG 6 cut(s) 43, 161, 447, 589, 1243, 1249
PspGI CCWGG 6 cut(s) 43, 161, 447, 589, 1243, 1249
PspN4I GGNNCC 7 cut(s) 899, 1012, 1042, 1285, 1329, 1374, 1440
PspPI GGNCC 3 cut(s) 506, 1247, 1283
PspPPI RGGWCCY 1 cut(s) 1283
PstI CTGCAG 2 cut(s) 763, 982
PstNI CAGNNNCTG 1 cut(s) 977
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 4 cut(s) 374, 421, 588, 800
RsaNI GTAC 4 cut(s) 373, 420, 587, 799
RseI CAYNNNNRTG 1 cut(s) 1058
SacI GAGCTC 3 cut(s) 136, 181, 1539
SaqAI TTAA 2 cut(s) 122, 1230
Sau3AI GATC 1 cut(s) 663
Sau96I GGNCC 3 cut(s) 506, 1247, 1283
ScrFI CCNGG 7 cut(s) 45, 163, 435, 449, 591, 1245, 1251
SduI GDGCHC 8 cut(s) 136, 145, 181, 617, 1185, 1375, 1414, 1539
SfaNI GCATC 7 cut(s) 439, 470, 531, 955, 995, 1093, 1213
SfcI CTRYAG 2 cut(s) 759, 978
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SphI GCATGC 1 cut(s) 700
SsiI CCGC 5 cut(s) 684, 874, 930, 1509, 1542
SspMI CTAG 4 cut(s) 66, 608, 813, 1570
SstI GAGCTC 3 cut(s) 136, 181, 1539
StyD4I CCNGG 7 cut(s) 43, 161, 433, 447, 589, 1243, 1249
TaaI ACNGT 3 cut(s) 31, 586, 1015
TaiI ACGT 2 cut(s) 694, 1072
TaqI TCGA 4 cut(s) 196, 250, 545, 1159
TatI WGTACW 2 cut(s) 419, 798
TauI GCSGC 1 cut(s) 1544
TfiI GAWTC 5 cut(s) 335, 492, 627, 1236, 1343
Tru1I TTAA 2 cut(s) 122, 1230
Tru9I TTAA 2 cut(s) 122, 1230
TseFI GTSAC 1 cut(s) 1090
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 7 cut(s) 305, 348, 578, 1042, 1047, 1076, 1418
TspGWI ACGGA 3 cut(s) 91, 504, 515
Van91I CCANNNNNTGG 3 cut(s) 44, 265, 1555
VpaK11BI GGWCC 1 cut(s) 1283
XagI CCTNNNNNAGG 1 cut(s) 1248
XapI RAATTY 4 cut(s) 207, 824, 1019, 1131
XceI RCATGY 2 cut(s) 195, 700
XmnI GAANNNNTTC 3 cut(s) 207, 1131, 1155
XspI CTAG 4 cut(s) 66, 608, 813, 1570
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.