Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

4744699 .. 4745904

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCATCTCTCTGTCCCACCAGCAACTTTCCCAGTGATCCTTTCCCGGCAGCAGCTGAGGAAATAGCTTGCAACCAAGACCTCATCACGCTGATCCTCATCCGCCTGCCTGTTAAGTCTCTTCTCCGATTCAAATGTGTCTCCAAGACTTGGCTCTACCTCATCTCCAATCCACAATTCAGTACCCGCCATCGCAGTCTTGCCTCTGCAGGCATCATCTTGTGTCAAAGTCCCGGTCTCATTGGTCACCTGTCTCACCATTGCAGAAATTCTGAGCAACCCTTTACGTCTCTCAACTTCATCGGTGACTCAGCCGGTGTTAAAGTGTTGCAGTCTATCAATGGCCTGGTCTTGTGCTGTAGCTATCCCAAACGGGGGAAACGCCGCAGCTTTTATGTCTGCAACCCTTCAACAAGGCAATTCTTGATGCTTCCTCCACCTAACGCGGATGGCTGCGATTCGTGCACAACCATTTTCGGTGTTAATTTGGCTTTCAATCCCCCTAAGTCACCTCACTACCAAGTTGTCTGCGTTCAAAATTGTTCTTCTTCATCAACAGCATCCGGTAATTACCAGATTGAGATATACTCATCTGAGACTGGAACTTGGAGGCTATCTGGCTCTCCTTTTGTTGCCACATCTGACATGGTGTTTGAAAATGGGGTGCTTTGGAATGGCACAATTCACTGGATTAGCCCAAAAGGGGCTACATTATGTTTCGATATCGATCGAGAGCTCCTCCGATCAATGCCTAGTCCTCCATCACATGAGAGATGGGACAAAAGAAGGTTCAGATATTTTGGTGAGTCTGGTGGTCATTTGCACCTTGTTGAAATTTATGGTCCAAGCACTACTCAATTCCAAGTCTTTGAGATGGAGACGGATTACTCAAGATGGATTCCCAAGTATGATATCGACATGGCTGCAATCGTAGATGAACTTCCGGGGATGGTTATGGAATACCTTGAGCTCCATGAATATGGTTCTCGTTTCTATGCATTTGTTTTGCTTTTTGTCCAAGAAATTGAAGGGGGCCCGTTTCTGTTGCTACACATTCCTGGTAAGTTTATATCTTACAATATTAGAGATAGGACCTTCAAGGAGATTTGTGGTTTTGGTCCCAAATCCACCGAAACAAATACTTCTGCGTTGCAGATCGGATGCTTTCATGCTTATCAGTTTGTAGAGACTCTGGCTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

402

Amino Acids

44.99

Weight (kDa)

6.63

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccII	CGCG	1 cut(s)	446
AciI	CCGC	4 cut(s)	103, 187, 385, 446
AclWI	GGATC	2 cut(s)	32, 88
AcsI	RAATTY	2 cut(s)	268, 834
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	4 cut(s)	150, 374, 375, 703
AgsI	TTSAA	8 cut(s)	133, 411, 496, 536, 656, 833, 1028, 1099
AjnI	CCWGG	2 cut(s)	345, 1057
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	56, 68, 363, 390, 736, 970
AluI	AGCT	6 cut(s)	56, 68, 363, 390, 736, 970
Alw21I	GWGCWC	3 cut(s)	467, 738, 972
Alw26I	GTCTC	8 cut(s)	123, 145, 242, 258, 294, 590, 872, 1181
Alw44I	GTGCAC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	32, 88
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	343, 1033
ApaI	GGGCCC	1 cut(s)	1037
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	5 cut(s)	50, 53, 387, 453, 923
ApoI	RAATTY	2 cut(s)	268, 834
ArsI	GACNNNNNNTTYG	4 cut(s)	220, 252, 635, 667
AspS9I	GGNCC	5 cut(s)	842, 1033, 1034, 1092, 1118
AsuC2I	CCSGG	3 cut(s)	47, 234, 945
AsuHPI	GGTGA	5 cut(s)	239, 248, 317, 501, 815
AvaII	GGWCC	3 cut(s)	842, 1092, 1118
BaeGI	GKGCMC	2 cut(s)	467, 1037
BanII	GRGCYC	3 cut(s)	738, 972, 1037
BarI	GAAGNNNNNNTAC	2 cut(s)	924, 956
Bbv12I	GWGCWC	3 cut(s)	467, 738, 972
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	5 cut(s)	62, 65, 399, 440, 910
BccI	CCATC	7 cut(s)	198, 443, 768, 769, 868, 888, 943
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	2 cut(s)	347, 1059
BcnI	CCSGG	3 cut(s)	47, 234, 945
BcoDI	GTCTC	8 cut(s)	123, 145, 242, 258, 294, 590, 872, 1181
BfaI	CTAG	2 cut(s)	753, 1197
BfmI	CTRYAG	2 cut(s)	207, 358
BisI	GCNGC	6 cut(s)	51, 54, 385, 388, 454, 924
BlsI	GCNGC	6 cut(s)	52, 55, 386, 389, 455, 925
Bme1390I	CCNGG	5 cut(s)	47, 234, 347, 945, 1059
Bme18I	GGWCC	3 cut(s)	842, 1092, 1118
BmgT120I	GGNCC	5 cut(s)	842, 1033, 1034, 1092, 1118
BmiI	GGNNCC	3 cut(s)	1034, 1035, 1120
BmrFI	CCNGG	5 cut(s)	47, 234, 347, 945, 1059
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	5 cut(s)	14, 222, 417, 569, 1151
BmuI	ACTGGG	1 cut(s)	27
BplI	GAGNNNNNCTC	4 cut(s)	572, 604, 723, 755
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	874, 986
BpuMI	CCSGG	3 cut(s)	47, 234, 945
Bsa29I	ATCGAT	1 cut(s)	726
BsaBI	GATNNNNATC	2 cut(s)	98, 726
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	944
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 374, 375, 703
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	33, 604, 692
Bse3DI	GCAATG	1 cut(s)	259
Bse8I	GATNNNNATC	2 cut(s)	98, 726
BseBI	CCWGG	2 cut(s)	347, 1059
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	944
BseGI	GGATG	5 cut(s)	99, 454, 560, 954, 1166
BseJI	GATNNNNATC	2 cut(s)	98, 726
BseLI	CCNNNNNNNGG	4 cut(s)	150, 374, 375, 703
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	4 cut(s)	48, 264, 324, 585
BseNI	ACTGG	3 cut(s)	33, 604, 692
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	2 cut(s)	467, 1037
BseXI	GCAGC	5 cut(s)	62, 65, 399, 440, 910
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	730
BshFI	GGCC	2 cut(s)	345, 1035
BshVI	ATCGAT	1 cut(s)	726
BsiEI	CGRYCG	1 cut(s)	730
BsiHKAI	GWGCWC	3 cut(s)	467, 738, 972
BsiSI	CCGG	5 cut(s)	47, 234, 315, 564, 944
BslFI	GGGAC	3 cut(s)	216, 791, 1104
BslI	CCNNNNNNNGG	4 cut(s)	150, 374, 375, 703
BsmAI	GTCTC	8 cut(s)	123, 145, 242, 258, 294, 590, 872, 1181
BsmBI	CGTCTC	2 cut(s)	294, 872
BsmFI	GGGAC	3 cut(s)	216, 791, 1104
BsnI	GGCC	2 cut(s)	345, 1035
Bso31I	GGTCTC	1 cut(s)	242
Bsp120I	GGGCCC	1 cut(s)	1033
Bsp1286I	GDGCHC	4 cut(s)	467, 738, 972, 1037
Bsp143I	GATC	5 cut(s)	37, 93, 727, 743, 1155
BspACI	CCGC	4 cut(s)	103, 187, 385, 446
BspANI	GGCC	2 cut(s)	345, 1035
BspCNI	CTCAG	4 cut(s)	49, 265, 323, 586
BspDI	ATCGAT	1 cut(s)	726
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	3 cut(s)	1034, 1035, 1120
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	32, 88
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	33, 604, 692
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	5 cut(s)	37, 93, 727, 743, 1155
Bst2UI	CCWGG	2 cut(s)	347, 1059
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	70, 107, 211
BstDEI	CTNAG	5 cut(s)	57, 273, 310, 504, 594
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	99, 454, 560, 954, 1166
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	5 cut(s)	40, 96, 730, 746, 1158
BstMAI	GTCTC	8 cut(s)	123, 145, 242, 258, 294, 590, 872, 1181
BstMBI	GATC	5 cut(s)	37, 93, 727, 743, 1155
BstMCI	CGRYCG	1 cut(s)	730
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstNI	CCWGG	2 cut(s)	347, 1059
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	5 cut(s)	45, 232, 345, 943, 1057
BstSFI	CTRYAG	2 cut(s)	207, 358
BstSLI	GKGCMC	2 cut(s)	467, 1037
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	5 cut(s)	62, 65, 399, 440, 910
BstXI	CCANNNNNNTGG	1 cut(s)	980
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	345, 1035
BsuTUI	ATCGAT	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	5 cut(s)	99, 454, 560, 954, 1166
BtsIMutI	CAGTG	2 cut(s)	40, 685
Cac8I	GCNNGC	3 cut(s)	70, 107, 211
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	5 cut(s)	842, 1033, 1034, 1092, 1118
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	5 cut(s)	646, 767, 919, 974, 1169
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	5 cut(s)	57, 273, 310, 504, 594
DpnI	GATC	5 cut(s)	39, 95, 729, 745, 1157
DpnII	GATC	5 cut(s)	37, 93, 727, 743, 1155
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	2 cut(s)	736, 970
Eco24I	GRGCYC	3 cut(s)	738, 972, 1037
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	2 cut(s)	724, 913
Eco47I	GGWCC	3 cut(s)	842, 1092, 1118
Eco53kI	GAGCTC	2 cut(s)	736, 970
Eco91I	GGTNACC	1 cut(s)	245
EcoICRI	GAGCTC	2 cut(s)	736, 970
EcoO109I	RGGNCCY	2 cut(s)	1033, 1092
EcoO65I	GGTNACC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	345, 1057
EcoRV	GATATC	2 cut(s)	724, 913
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	3 cut(s)	738, 972, 1037
Esp3I	CGTCTC	2 cut(s)	294, 872
FaeI	CATG	5 cut(s)	649, 770, 922, 977, 1172
FaqI	GGGAC	3 cut(s)	216, 791, 1104
FatI	CATG	5 cut(s)	645, 766, 918, 973, 1168
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	51, 54, 385, 388, 454, 924
FokI	GGATG	5 cut(s)	86, 461, 547, 961, 1173
FriOI	GRGCYC	3 cut(s)	738, 972, 1037
Fsp4HI	GCNGC	6 cut(s)	51, 54, 385, 388, 454, 924
FspBI	CTAG	2 cut(s)	753, 1197
GluI	GCNGC	6 cut(s)	51, 54, 385, 388, 454, 924
HaeIII	GGCC	2 cut(s)	345, 1035
HapII	CCGG	5 cut(s)	47, 234, 315, 564, 944
Hin1II	CATG	5 cut(s)	649, 770, 922, 977, 1172
HinfI	GANTC	6 cut(s)	129, 308, 458, 806, 898, 1189
HpaII	CCGG	5 cut(s)	47, 234, 315, 564, 944
HphI	GGTGA	5 cut(s)	239, 248, 317, 501, 815
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	7 cut(s)	128, 274, 595, 643, 743, 794, 1160
Hpy188III	TCNNGA	3 cut(s)	424, 731, 891
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	4 cut(s)	417, 780, 1022, 1105
HpyCH4IV	ACGT	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
HpyF3I	CTNAG	5 cut(s)	57, 273, 310, 504, 594
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	5 cut(s)	649, 770, 922, 977, 1172
Kzo9I	GATC	5 cut(s)	37, 93, 727, 743, 1155
LmnI	GCTCC	2 cut(s)	741, 975
Lsp1109I	GCAGC	5 cut(s)	62, 65, 399, 440, 910
LweI	GCATC	5 cut(s)	14, 222, 417, 569, 1151
MaeI	CTAG	2 cut(s)	753, 1197
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	245, 305, 507
MalI	GATC	5 cut(s)	39, 95, 729, 745, 1157
MboI	GATC	5 cut(s)	37, 93, 727, 743, 1155
MboII	GAAGA	3 cut(s)	113, 537, 540
MhlI	GDGCHC	4 cut(s)	467, 738, 972, 1037
MlyI	GAGTC	3 cut(s)	302, 815, 1183
Mph1103I	ATGCAT	1 cut(s)	1000
MseI	TTAA	3 cut(s)	114, 321, 483
MslI	CAYNNNNRTG	1 cut(s)	978
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	5 cut(s)	47, 234, 315, 564, 944
MspR9I	CCNGG	5 cut(s)	47, 234, 347, 945, 1059
MvaI	CCWGG	2 cut(s)	347, 1059
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	462
NciI	CCSGG	3 cut(s)	47, 234, 945
NdeII	GATC	5 cut(s)	37, 93, 727, 743, 1155
NlaIII	CATG	5 cut(s)	649, 770, 922, 977, 1172
NlaIV	GGNNCC	3 cut(s)	1034, 1035, 1120
NmuCI	GTSAC	3 cut(s)	245, 305, 507
NsiI	ATGCAT	1 cut(s)	1000
PfeI	GAWTC	3 cut(s)	129, 458, 898
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	52, 55, 386, 389, 455, 925
Ple19I	CGATCG	1 cut(s)	730
PleI	GAGTC	3 cut(s)	302, 814, 1183
PpsI	GAGTC	3 cut(s)	302, 814, 1183
PpuMI	RGGWCCY	1 cut(s)	1092
Psp124BI	GAGCTC	2 cut(s)	738, 972
Psp5II	RGGWCCY	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	345, 1057
PspEI	GGTNACC	1 cut(s)	245
PspGI	CCWGG	2 cut(s)	345, 1057
PspN4I	GGNNCC	3 cut(s)	1034, 1035, 1120
PspOMI	GGGCCC	1 cut(s)	1033
PspPI	GGNCC	5 cut(s)	842, 1033, 1034, 1092, 1118
PspPPI	RGGWCCY	1 cut(s)	1092
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	56
PvuI	CGATCG	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	978
SacI	GAGCTC	2 cut(s)	738, 972
SaqAI	TTAA	3 cut(s)	114, 321, 483
SatI	GCNGC	6 cut(s)	51, 54, 385, 388, 454, 924
Sau3AI	GATC	5 cut(s)	37, 93, 727, 743, 1155
Sau96I	GGNCC	5 cut(s)	842, 1033, 1034, 1092, 1118
SchI	GAGTC	3 cut(s)	302, 815, 1183
ScrFI	CCNGG	5 cut(s)	47, 234, 347, 945, 1059
SduI	GDGCHC	4 cut(s)	467, 738, 972, 1037
SfaNI	GCATC	5 cut(s)	14, 222, 417, 569, 1151
SfcI	CTRYAG	2 cut(s)	207, 358
SinI	GGWCC	3 cut(s)	842, 1092, 1118
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	2 cut(s)	889, 965
SmoI	CTYRAG	2 cut(s)	889, 965
SsiI	CCGC	4 cut(s)	103, 187, 385, 446
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	2 cut(s)	753, 1197
SstI	GAGCTC	2 cut(s)	738, 972
StyD4I	CCNGG	5 cut(s)	45, 232, 345, 943, 1057
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	720, 726, 730, 915
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	129, 458, 898
Tru1I	TTAA	3 cut(s)	114, 321, 483
Tru9I	TTAA	3 cut(s)	114, 321, 483
TscAI	CASTG	2 cut(s)	40, 692
TseFI	GTSAC	3 cut(s)	245, 305, 507
TseI	GCWGC	5 cut(s)	50, 53, 387, 453, 923
Tsp45I	GTSAC	3 cut(s)	245, 305, 507
TspDTI	ATGAA	5 cut(s)	289, 540, 951, 990, 1157
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	2 cut(s)	40, 692
Van91I	CCANNNNNTGG	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	463
VpaK11BI	GGWCC	3 cut(s)	842, 1092, 1118
XapI	RAATTY	2 cut(s)	268, 834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XspI	CTAG	2 cut(s)	753, 1197
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.