Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

12174555 .. 12175679

Gene Structure 1125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCTCCACCAAGATCTCATAACCGAGATCCTCCTCCGCCTCCCCGTCAAGTCCCTCCTCCGCTTCAAATGCGTCTCCAAGCAGTGGCTCTCTCTCATCTCCAGCCCCCAGTTCCGCCACCACCGCCGCAGCCTCACCTCCTCCGGCGTCATCTTGTGTCGAACAACCGACCTCATCCACCACATATCTCTACTTGGAAGCAACAACTCCGACCAGCCCTTCACTTCCCTCAGCTTCATTCATGACTCGGCAGGTATCAAAATCCTTCAGTCCAGCCATGGCTTGCTCTTGTGCCGCAGCCTTTACAAACTGGGTAAAACCTGCACCTATTACATCTGCAATCCTTCAACAAAGAAATTCTCAGTTCTTCCTCAGTTTTGTGCTGAAGCGGATTATGTATCCGGGTCGGAATCCAGAACTATTTCTGGTGTTTATTTAGTTTTCAATCCCACTAAGTCACCTCACTACCTAGTTGCCTGCATTCGAATGTGTTCTTCCTCATTCAATAGCTACCAAGTTGAGATTTACTCATCTGCGACACGGGCTTGGGGGCTTTCCGGGTCTCCTTTCGCTGCCCCTTTCGACATGGTGTTTGACAATGGGGTGCTTTGGAATGCTGCAATACACTGGATCAGTCCAACTGGGGCCTCGTTATGCTTTGATATTGATCAAGAACGCCTTGGAACAATGCCTGGTCTTCCGTCAAATGAGAAATGGAGCAGGAGAAGGTTGAGGTATTTCGGTGAGTCTGGTGGGCATTTGTACCTAACTGAAATCTATGGCTGCACCTCTCAATTCCAAGTCTTTGAGATGGAGAGGGATTACTCTAGCTGGGTTCCCAAGTACAATGTCGATCTTGCTCCAGTTGTAGATGCATTTCCGGAGATGGTTCGCAACTGCATGTTCCGTAATGATTCTGTTTCTTATGCATTTAGTCTACTCTGTTTGCAAGAGGATGAAAATGACTCATTGCTGTTGCTGCACATTCCTGGTAAGTTTGTATCATATAGTCTTAGGAATAGGACATTCAAGTTGCTTGGTTCAATATCCAAGGAATCAAATACTGCATTGCAGGTTGGATGTTTCCATGCTTATCAGTTTATGGAGTCTTTGGCTGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

374

Amino Acids

42.22

Weight (kDa)

8.36

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 40	5.4e-09	F-box domain
FBA_3	PF08268	76 - 231	2.1e-08	F-box associated beta propeller domain
FBA_1	PF07734	81 - 291	9.3e-08	F-box associated beta propeller domain
Beta-prop_KIB1-4	PF03478	82 - 279	4.4e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	242, 329, 1063
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	937
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	7 cut(s)	37, 61, 115, 124, 127, 295, 389
AclWI	GGATC	2 cut(s)	22, 638
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	2 cut(s)	251, 405
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	764, 845
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	6 cut(s)	67, 348, 445, 505, 1030, 1044
AjnI	CCWGG	2 cut(s)	691, 988
AluBI	AGCT	3 cut(s)	234, 510, 831
AluI	AGCT	3 cut(s)	234, 510, 831
Alw26I	GTCTC	2 cut(s)	79, 567
AlwI	GGATC	2 cut(s)	22, 638
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	6 cut(s)	129, 297, 572, 617, 783, 979
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	2 cut(s)	421, 490
AspS9I	GGNCC	1 cut(s)	645
AsuC2I	CCSGG	2 cut(s)	403, 559
AsuHPI	GGTGA	3 cut(s)	127, 450, 755
AsuII	TTCGAA	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	6 cut(s)	141, 309, 559, 604, 770, 966
BccI	CCATC	2 cut(s)	805, 880
BciT130I	CCWGG	2 cut(s)	693, 990
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	403, 559
BcoDI	GTCTC	2 cut(s)	79, 567
BfaI	CTAG	2 cut(s)	470, 828
BfuAI	ACCTGC	3 cut(s)	242, 329, 1063
BfuI	GTATCC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	8 cut(s)	127, 130, 295, 298, 573, 618, 784, 980
BlsI	GCNGC	8 cut(s)	128, 131, 296, 299, 574, 619, 785, 981
Bme1390I	CCNGG	4 cut(s)	403, 559, 693, 990
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	646, 837
BmrFI	CCNGG	4 cut(s)	403, 559, 693, 990
BmrI	ACTGGG	3 cut(s)	103, 320, 651
BmsI	GCATC	1 cut(s)	862
BmuI	ACTGGG	3 cut(s)	103, 320, 651
BpiI	GAAGAC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	2 cut(s)	85, 846
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	484
BpuMI	CCSGG	2 cut(s)	403, 559
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	277, 679, 1050
BsaWI	WCCGGW	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	5 cut(s)	109, 315, 632, 646, 863
Bse3DI	GCAATG	2 cut(s)	968, 1067
Bse8I	GATNNNNATC	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	2 cut(s)	693, 990
BseDI	CCNNGG	3 cut(s)	277, 679, 1050
BseGI	GGATG	3 cut(s)	174, 961, 1085
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	2 cut(s)	968, 1067
BseMII	CTCAG	3 cut(s)	244, 375, 386
BseNI	ACTGG	5 cut(s)	109, 315, 632, 646, 863
BseRI	GAGGAG	3 cut(s)	23, 47, 130
BseXI	GCAGC	6 cut(s)	141, 309, 559, 604, 770, 966
BseYI	CCCAGC	1 cut(s)	831
BsgI	GTGCAG	3 cut(s)	307, 769, 965
BshFI	GGCC	1 cut(s)	647
BsiSI	CCGG	4 cut(s)	144, 402, 558, 881
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	79, 567
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	480, 619
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	484
Bsp13I	TCCGGA	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	13, 27, 630, 667, 853
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	7 cut(s)	37, 61, 115, 124, 127, 295, 389
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	243, 374, 385
BspEI	TCCGGA	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	646, 837
BspMI	ACCTGC	3 cut(s)	242, 329, 1063
BspPI	GGATC	2 cut(s)	22, 638
BspT104I	TTCGAA	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	968, 1067
BsrI	ACTGG	5 cut(s)	109, 315, 632, 646, 863
BssECI	CCNNGG	3 cut(s)	277, 679, 1050
BssMI	GATC	5 cut(s)	13, 27, 630, 667, 853
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	3 cut(s)	277, 679, 1050
Bst2UI	CCWGG	2 cut(s)	693, 990
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	284, 478
BstDEI	CTNAG	5 cut(s)	230, 361, 372, 453, 1013
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	174, 961, 1085
BstKTI	GATC	5 cut(s)	16, 30, 633, 670, 856
BstMAI	GTCTC	2 cut(s)	79, 567
BstMBI	GATC	5 cut(s)	13, 27, 630, 667, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 979
BstNI	CCWGG	2 cut(s)	693, 990
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	4 cut(s)	401, 557, 691, 988
BstV1I	GCAGC	6 cut(s)	141, 309, 559, 604, 770, 966
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	13, 27
BstYI	RGATCY	2 cut(s)	13, 27
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	647
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	174, 961, 1085
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	89, 625
BveI	ACCTGC	3 cut(s)	242, 329, 1063
Cac8I	GCNNGC	2 cut(s)	284, 478
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	645
CseI	GACGC	2 cut(s)	61, 136
Csp6I	GTAC	2 cut(s)	763, 844
CviAII	CATG	5 cut(s)	242, 278, 586, 901, 1088
CviQI	GTAC	2 cut(s)	763, 844
DdeI	CTNAG	5 cut(s)	230, 361, 372, 453, 1013
DpnI	GATC	5 cut(s)	15, 29, 632, 669, 855
DpnII	GATC	5 cut(s)	13, 27, 630, 667, 853
EciI	GGCGGA	2 cut(s)	26, 104
Eco130I	CCWWGG	3 cut(s)	277, 679, 1050
Eco31I	GGTCTC	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	251, 405
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	691, 988
EcoT14I	CCWWGG	3 cut(s)	277, 679, 1050
EcoT22I	ATGCAT	2 cut(s)	877, 931
ErhI	CCWWGG	3 cut(s)	277, 679, 1050
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	245, 281, 589, 904, 1091
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	5 cut(s)	241, 277, 585, 900, 1087
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	937
Fnu4HI	GCNGC	8 cut(s)	127, 130, 295, 298, 573, 618, 784, 980
FokI	GGATG	3 cut(s)	161, 968, 1092
Fsp4HI	GCNGC	8 cut(s)	127, 130, 295, 298, 573, 618, 784, 980
FspBI	CTAG	2 cut(s)	470, 828
GluI	GCNGC	8 cut(s)	127, 130, 295, 298, 573, 618, 784, 980
GsaI	CCCAGC	1 cut(s)	835
GsuI	CTGGAG	2 cut(s)	85, 846
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	4 cut(s)	144, 402, 558, 881
HgaI	GACGC	2 cut(s)	61, 136
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	245, 281, 589, 904, 1091
HinfI	GANTC	7 cut(s)	245, 410, 746, 914, 965, 1055, 1106
HpaII	CCGG	4 cut(s)	144, 402, 558, 881
HphI	GGTGA	3 cut(s)	127, 450, 755
Hpy166II	GTNNAC	1 cut(s)	938
Hpy188I	TCNGA	3 cut(s)	211, 409, 1124
Hpy188III	TCNNGA	4 cut(s)	242, 414, 671, 881
Hpy8I	GTNNAC	1 cut(s)	938
HpyAV	CCTTC	4 cut(s)	229, 275, 354, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 979
HpyF3I	CTNAG	5 cut(s)	230, 361, 372, 453, 1013
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	245, 281, 589, 904, 1091
Kpn2I	TCCGGA	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	13, 27, 630, 667, 853
LmnI	GCTCC	3 cut(s)	9, 717, 865
Lsp1109I	GCAGC	6 cut(s)	141, 309, 559, 604, 770, 966
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	2 cut(s)	470, 828
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	5 cut(s)	15, 29, 632, 669, 855
MboI	GATC	5 cut(s)	13, 27, 630, 667, 853
MboII	GAAGA	3 cut(s)	359, 486, 689
MflI	RGATCY	2 cut(s)	13, 27
MluCI	AATT	2 cut(s)	356, 794
MlyI	GAGTC	4 cut(s)	239, 755, 959, 1115
MmeI	TCCRAC	4 cut(s)	234, 387, 662, 1057
Mph1103I	ATGCAT	2 cut(s)	877, 931
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	2 cut(s)	421, 490
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	4 cut(s)	144, 402, 558, 881
MspR9I	CCNGG	4 cut(s)	403, 559, 693, 990
Mva1269I	GAATGC	2 cut(s)	480, 619
MvaI	CCWGG	2 cut(s)	693, 990
MwoI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 979
NciI	CCSGG	2 cut(s)	403, 559
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	13, 27, 630, 667, 853
NlaIII	CATG	5 cut(s)	245, 281, 589, 904, 1091
NlaIV	GGNNCC	2 cut(s)	646, 837
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	2 cut(s)	877, 931
NspI	RCATGY	1 cut(s)	904
NspV	TTCGAA	1 cut(s)	484
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	2 cut(s)	480, 619
PdmI	GAANNNNTTC	2 cut(s)	421, 490
PfeI	GAWTC	3 cut(s)	410, 914, 1055
PflMI	CCANNNNNTGG	1 cut(s)	84
PkrI	GCNGC	8 cut(s)	128, 131, 296, 299, 574, 619, 785, 981
PleI	GAGTC	4 cut(s)	239, 754, 959, 1114
PpsI	GAGTC	4 cut(s)	239, 754, 959, 1114
Psp6I	CCWGG	2 cut(s)	691, 988
PspFI	CCCAGC	1 cut(s)	831
PspGI	CCWGG	2 cut(s)	691, 988
PspN4I	GGNNCC	2 cut(s)	646, 837
PspPI	GGNCC	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	13, 27
RsaI	GTAC	2 cut(s)	764, 845
RsaNI	GTAC	2 cut(s)	763, 844
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	8 cut(s)	127, 130, 295, 298, 573, 618, 784, 980
Sau3AI	GATC	5 cut(s)	13, 27, 630, 667, 853
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	4 cut(s)	239, 755, 959, 1115
ScrFI	CCNGG	4 cut(s)	403, 559, 693, 990
SfaNI	GCATC	1 cut(s)	862
SfuI	TTCGAA	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	2 cut(s)	356, 794
SsiI	CCGC	7 cut(s)	37, 61, 115, 124, 127, 295, 389
SspMI	CTAG	2 cut(s)	470, 828
StyD4I	CCNGG	4 cut(s)	401, 557, 691, 988
StyI	CCWWGG	3 cut(s)	277, 679, 1050
TaqI	TCGA	4 cut(s)	160, 484, 582, 852
TasI	AATT	2 cut(s)	356, 794
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	2 cut(s)	129, 297
TfiI	GAWTC	3 cut(s)	410, 914, 1055
TscAI	CASTG	2 cut(s)	89, 632
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	6 cut(s)	129, 297, 572, 617, 783, 979
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	3 cut(s)	226, 230, 972
TspGWI	ACGGA	2 cut(s)	690, 896
TspRI	CASTG	2 cut(s)	89, 632
Van91I	CCANNNNNTGG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	937
XmnI	GAANNNNTTC	2 cut(s)	421, 490
XspI	CTAG	2 cut(s)	470, 828
Zsp2I	ATGCAT	2 cut(s)	877, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.