Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003773.1

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Forward (+)

5695 .. 6876

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgctgctgcttctctgggatccactgcctccagcagaagcagtttctggcaaccaagatctcatcacagacatccttctacgcctccctgtcaagtctcttctccggttcaaatgcgtctccaagcagtggctctctcttatctccgacccccgattcagtcgtaattatcgcagtcttgcatctgccagcatcctgttgtgcggaacaaccgagctcattgatcatgtatcttgcggcagaagaaactccgagccgccctttacttctctcggtttcattagtgactctgcaggtaccaaaatcttgcagtcatgcaatggcttgatgttgtgttgcagctttttcaaaatgggaatgagttgcaactattacatctgtaatccttcaacaaggcaattcttgatgcttcctccacctaatgccaaagggtgcgatgaatccacaaccattcttggtgtttatttagcttttgatccttctaaatcacctcactaccaagttctctgtgttcgaaattgttcttccttgtcagcagcagcagcaaatgatcattaccagattgagatatactcgtctgagactctcagttggaggctttccgggtctcctttcagtgctccattcgacatggtttttgacaacggagttgtttggaatggtacaatacattggattagtccaacaggggcttcactctgttttgatattgtccacgagcaacttggagaaatgcctagccttccatcaaatgagaaatggagcaagaggaggtcaaggtatttcggcgagtctagtggtcatttgcacctaattgaaatctatggctctggcaccactcaattccaagtcttcgagatgaagaaagactactctagctggattcccaagtaccaagttgacctcgccgcgattgtcaaggcatttccagagatggttcggagctaccctgacgcccatgattctcgattttgtctatttagtatcctctttgtgcaagagaatgaagaggactcattattgttgctgcaaatccctggtaagttcatatcttacaatcttagacataagaccttcaaggagatttgtgattttggagcaaactccaccaaggcaaatacttcattaccgattggttgcttccaagcttatcagttcatagagactctggcttgtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

393

Amino Acids

44.1

Weight (kDa)

6.31

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	2 cut(s)	296, 833
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccII	CGCG	1 cut(s)	911
AciI	CCGC	4 cut(s)	204, 237, 257, 909
AclWI	GGATC	3 cut(s)	14, 27, 470
AcyI	GRCGYC	1 cut(s)	954
AfaI	GTAC	3 cut(s)	298, 664, 893
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	112, 349, 390, 818, 1078
AjnI	CCWGG	1 cut(s)	1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AluBI	AGCT	6 cut(s)	217, 342, 470, 879, 945, 1148
AluI	AGCT	6 cut(s)	217, 342, 470, 879, 945, 1148
Alw21I	GWGCWC	2 cut(s)	219, 622
Alw26I	GTCTC	5 cut(s)	102, 124, 575, 612, 1157
AlwI	GGATC	3 cut(s)	14, 27, 470
AlwNI	CAGNNNCTG	1 cut(s)	47
ApeKI	GCWGC	7 cut(s)	4, 7, 339, 536, 539, 542, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
Asp700I	GAANNNNTTC	1 cut(s)	520
Asp718I	GGTACC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	480
AsuII	TTCGAA	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	2 cut(s)	296, 833
BanII	GRGCYC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	854, 886
BauI	CACGAG	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	2 cut(s)	219, 622
BbvI	GCAGC	5 cut(s)	351, 548, 551, 554, 1014
BccI	CCATC	2 cut(s)	754, 928
BciT130I	CCWGG	1 cut(s)	1038
BciVI	GTATCC	1 cut(s)	995
BclI	TGATCA	2 cut(s)	223, 550
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	5 cut(s)	102, 124, 575, 612, 1157
BfaI	CTAG	3 cut(s)	738, 795, 876
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	995
BglII	AGATCT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	604, 1038
BmiI	GGNNCC	3 cut(s)	21, 298, 835
BmrFI	CCNGG	2 cut(s)	604, 1038
BmsI	GCATC	3 cut(s)	191, 201, 396
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	954
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	1036, 1110
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	1036, 1110
BseGI	GGATG	2 cut(s)	72, 192
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	570, 601
BseRI	GAGGAG	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	351, 548, 551, 554, 1014
Bsh1236I	CGCG	1 cut(s)	911
BshNI	GGYRCC	2 cut(s)	296, 833
BsiHKAI	GWGCWC	2 cut(s)	219, 622
BsiSI	CCGG	2 cut(s)	106, 603
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	5 cut(s)	102, 124, 575, 612, 1157
BsmBI	CGTCTC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	219, 622
Bsp143I	GATC	5 cut(s)	19, 58, 223, 475, 550
BspACI	CCGC	4 cut(s)	204, 237, 257, 909
BspCNI	CTCAG	2 cut(s)	571, 600
BspFNI	CGCG	1 cut(s)	911
BspLI	GGNNCC	3 cut(s)	21, 298, 835
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	3 cut(s)	14, 27, 470
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	2 cut(s)	296, 833
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	1036, 1110
BssMI	GATC	5 cut(s)	19, 58, 223, 475, 550
BssNI	GRCGYC	1 cut(s)	954
BssSI	CACGAG	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	1110
Bst2BI	CACGAG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	1038
Bst6I	CTCTTC	2 cut(s)	105, 1002
BstACI	GRCGYC	1 cut(s)	954
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	3 cut(s)	579, 587, 1061
BstF5I	GGATG	2 cut(s)	72, 192
BstFNI	CGCG	1 cut(s)	911
BstKTI	GATC	5 cut(s)	22, 61, 226, 478, 553
BstMAI	GTCTC	5 cut(s)	102, 124, 575, 612, 1157
BstMBI	GATC	5 cut(s)	19, 58, 223, 475, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	1038
BstSCI	CCNGG	2 cut(s)	602, 1036
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	911
BstV1I	GCAGC	5 cut(s)	351, 548, 551, 554, 1014
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	19, 58
BstYI	RGATCY	2 cut(s)	19, 58
BsuI	GTATCC	1 cut(s)	995
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	72, 192
BtsI	GCAGTG	2 cut(s)	23, 134
BtsIMutI	CAGTG	3 cut(s)	23, 134, 622
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	47
CseI	GACGC	2 cut(s)	106, 962
Csp6I	GTAC	3 cut(s)	297, 663, 892
CviAII	CATG	4 cut(s)	227, 315, 631, 959
CviQI	GTAC	3 cut(s)	297, 663, 892
DdeI	CTNAG	3 cut(s)	579, 587, 1061
DpnI	GATC	5 cut(s)	21, 60, 225, 477, 552
DpnII	GATC	5 cut(s)	19, 58, 223, 475, 550
Eam1104I	CTCTTC	2 cut(s)	105, 1002
EarI	CTCTTC	2 cut(s)	105, 1002
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	1110
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	1036
EcoT14I	CCWWGG	1 cut(s)	1110
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	1110
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	4 cut(s)	230, 318, 634, 962
FaiI	YATR	9 cut(s)	228, 316, 571, 632, 825, 960, 1049, 1068, 1160
FatI	CATG	4 cut(s)	226, 314, 630, 958
FbaI	TGATCA	2 cut(s)	223, 550
FokI	GGATG	2 cut(s)	59, 179
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	3 cut(s)	738, 795, 876
GsuI	CTGGAG	1 cut(s)	15
HapII	CCGG	2 cut(s)	106, 603
HgaI	GACGC	2 cut(s)	106, 962
Hin1I	GRCGYC	1 cut(s)	954
Hin1II	CATG	4 cut(s)	230, 318, 634, 962
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	9 cut(s)	156, 287, 440, 583, 791, 883, 962, 1013, 1165
HpaII	CCGG	2 cut(s)	106, 603
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	2 cut(s)	715, 901
Hpy188I	TCNGA	4 cut(s)	148, 253, 580, 942
Hpy188III	TCNNGA	4 cut(s)	403, 856, 929, 966
Hpy8I	GTNNAC	2 cut(s)	715, 901
HpyAV	CCTTC	5 cut(s)	86, 396, 489, 752, 1084
HpyCH4V	TGCA	9 cut(s)	182, 293, 310, 318, 339, 366, 808, 997, 1030
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	3 cut(s)	579, 587, 1061
Hsp92I	GRCGYC	1 cut(s)	954
Hsp92II	CATG	4 cut(s)	230, 318, 634, 962
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	223, 550
Kzo9I	GATC	5 cut(s)	19, 58, 223, 475, 550
LmnI	GCTCC	4 cut(s)	625, 762, 942, 1097
Lsp1109I	GCAGC	5 cut(s)	351, 548, 551, 554, 1014
LweI	GCATC	3 cut(s)	191, 201, 396
MaeI	CTAG	3 cut(s)	738, 795, 876
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	5 cut(s)	21, 60, 225, 477, 552
MboI	GATC	5 cut(s)	19, 58, 223, 475, 550
MboII	GAAGA	6 cut(s)	92, 255, 516, 844, 874, 1019
MflI	RGATCY	2 cut(s)	19, 58
MhlI	GDGCHC	2 cut(s)	219, 622
MluCI	AATT	5 cut(s)	166, 398, 517, 813, 842
MlyI	GAGTC	5 cut(s)	281, 577, 800, 1007, 1159
MmeI	TCCRAC	3 cut(s)	171, 572, 707
MroXI	GAANNNNTTC	1 cut(s)	520
MspI	CCGG	2 cut(s)	106, 603
MspR9I	CCNGG	2 cut(s)	604, 1038
MvaI	CCWGG	1 cut(s)	1038
MvnI	CGCG	1 cut(s)	911
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	5 cut(s)	19, 58, 223, 475, 550
NlaIII	CATG	4 cut(s)	230, 318, 634, 962
NlaIV	GGNNCC	3 cut(s)	21, 298, 835
NmuCI	GTSAC	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	4 cut(s)	156, 440, 883, 962
PflMI	CCANNNNNTGG	1 cut(s)	129
PleI	GAGTC	5 cut(s)	281, 577, 799, 1007, 1159
PpsI	GAGTC	5 cut(s)	281, 577, 799, 1007, 1159
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	1036
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	3 cut(s)	21, 298, 835
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	19, 58
RsaI	GTAC	3 cut(s)	298, 664, 893
RsaNI	GTAC	3 cut(s)	297, 663, 892
SacI	GAGCTC	1 cut(s)	219
Sau3AI	GATC	5 cut(s)	19, 58, 223, 475, 550
SchI	GAGTC	5 cut(s)	281, 577, 800, 1007, 1159
ScrFI	CCNGG	2 cut(s)	604, 1038
SduI	GDGCHC	2 cut(s)	219, 622
SfaNI	GCATC	3 cut(s)	191, 201, 396
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	514
Sse9I	AATT	5 cut(s)	166, 398, 517, 813, 842
SsiI	CCGC	4 cut(s)	204, 237, 257, 909
SspMI	CTAG	3 cut(s)	738, 795, 876
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	602, 1036
StyI	CCWWGG	1 cut(s)	1110
TaqI	TCGA	4 cut(s)	514, 627, 855, 967
TasI	AATT	5 cut(s)	166, 398, 517, 813, 842
TauI	GCSGC	3 cut(s)	240, 259, 911
TfiI	GAWTC	4 cut(s)	156, 440, 883, 962
TscAI	CASTG	3 cut(s)	30, 134, 622
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	7 cut(s)	4, 7, 339, 536, 539, 542, 1027
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	7 cut(s)	268, 453, 875, 1020, 1036, 1113, 1147
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	3 cut(s)	30, 134, 622
Van91I	CCANNNNNTGG	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	3 cut(s)	738, 795, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.