Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

14383566 .. 14384689

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCTCCCCCAAGATCTCATAACCGAGATCCTCCTACGCCTCCCCGTCAAGTCCCTCCTCCGCTTCAAATGCGTCTCCAAGCAGTGGCTCTCTCTCATCTCCAGCCCCCAGTTCCGCCACCACCGCCGCAGCCTCACCTCCTCCGGCGTCATCTTGTGTCGTACAACCGACCTCATCCACCACATATCACTACTTGGAAGCAACAACTCCGACCAGCCCTTCACTTCCCTCAGCTTCGTTCCTGACTCGGCGGGTATCAAAATCCTTCAGTCCAGCCATGGCTTGCTCTTGTGCCGCAGCCTTTACAAACTGGGTAAAACCTGCAGCTATTACATCTGCAATCCTTCAACAAAGAAATTCTCAGTTCTTCCTCATTATAGTGCTGAACCGGATTATGTATCCGGGTCGGAATCCAGAACTATTTCTGGTGTTTATTTAGTTTTCAATCCCACTAAGTCACCTCACTACCAAGTTGCCTGCATTCGAATGTGTTCTTCCTCATTCAATAGCTACCAAGTTGAGATATACTCATCTGCCACTCGGGCTTGGAGGCTTTCCGGGTCTCCTTTCGCTGCCCCTTTCGACATGGTGTTTGACAATGGGGTGCTTTGGCATGCTGCAATACACTGGATCAGTCCAACTGGGGCGTCGTTATGCTTTGATATTGATCAAGAACGCCTTGGAACAATGCCCGGTCTTCCGTCAAATGAGAAATGGAGCAGGAGAAGGTTGAGGTGTTTCGGCGAGTCTGGTGGGCATTTGCACCTAACTGAAATCTATGGCTGCACCTCTCAATTTCAATACAATGTCGATCTTGCTCCAGTTGTAGATGCATTTCCGGAGATGGTTCGGAACTGCATTTTCCGTAATGATTCTGTTTCTTATGCATTTAGTCTACTCTGTTTGCAAGAGGATGAAGATGACTCATGGCTGTTGCTGCACATTCCTGGTAAGTTTGTATCATATAGTCTTAGGAATAGGACGTTCAAGTTACTTGGTTCAATATCCAAGGAATCAAATACTGCATTGCAGGTTGGATGTTTCCATGCTTATCAGTTTATGGAGTCTTTGGCTGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

360

Amino Acids

40.5

Weight (kDa)

8.52

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 40	1.6e-10	F-box domain
F-box-like	PF12937	2 - 40	6.8e-06	F-box-like
FBA_3	PF08268	78 - 230	1.6e-10	F-box associated beta propeller domain
FBA_1	PF07734	86 - 249	4.2e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	329, 1021
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	895
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	6 cut(s)	61, 115, 124, 127, 251, 295
AclWI	GGATC	2 cut(s)	22, 638
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	2 cut(s)	147, 647
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	7 cut(s)	67, 348, 445, 505, 800, 988, 1002
AjnI	CCWGG	1 cut(s)	946
AluBI	AGCT	3 cut(s)	234, 327, 510
AluI	AGCT	3 cut(s)	234, 327, 510
Alw26I	GTCTC	2 cut(s)	79, 567
AlwI	GGATC	2 cut(s)	22, 638
Ama87I	CYCGRG	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	838
ApeKI	GCWGC	7 cut(s)	129, 297, 324, 572, 617, 783, 937
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	2 cut(s)	421, 490
AsuC2I	CCSGG	3 cut(s)	403, 559, 693
AsuHPI	GGTGA	2 cut(s)	127, 450
AsuII	TTCGAA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	7 cut(s)	141, 309, 336, 559, 604, 770, 924
BccI	CCATC	1 cut(s)	838
BciT130I	CCWGG	1 cut(s)	948
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	3 cut(s)	403, 559, 693
BcoDI	GTCTC	2 cut(s)	79, 567
BfmI	CTRYAG	1 cut(s)	322
BfuAI	ACCTGC	2 cut(s)	329, 1021
BfuI	GTATCC	1 cut(s)	409
BglI	GCCNNNNNGGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	9 cut(s)	127, 130, 295, 298, 325, 573, 618, 784, 938
BlsI	GCNGC	9 cut(s)	128, 131, 296, 299, 326, 574, 619, 785, 939
Bme1390I	CCNGG	4 cut(s)	403, 559, 693, 948
BmeT110I	CYCGRG	1 cut(s)	540
BmrFI	CCNGG	4 cut(s)	403, 559, 693, 948
BmrI	ACTGGG	3 cut(s)	103, 320, 651
BmsI	GCATC	1 cut(s)	820
BmuI	ACTGGG	3 cut(s)	103, 320, 651
BpiI	GAAGAC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	2 cut(s)	85, 804
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	484
BpuMI	CCSGG	3 cut(s)	403, 559, 693
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	2 cut(s)	147, 647
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	277, 679, 1008
BsaWI	WCCGGW	2 cut(s)	388, 838
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	5 cut(s)	109, 315, 632, 646, 821
Bse3DI	GCAATG	1 cut(s)	1025
Bse8I	GATNNNNATC	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	948
BseDI	CCNNGG	3 cut(s)	277, 679, 1008
BseGI	GGATG	3 cut(s)	174, 919, 1043
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	2 cut(s)	244, 375
BseNI	ACTGG	5 cut(s)	109, 315, 632, 646, 821
BseRI	GAGGAG	2 cut(s)	47, 130
BseXI	GCAGC	7 cut(s)	141, 309, 336, 559, 604, 770, 924
BsgI	GTGCAG	2 cut(s)	769, 923
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	6 cut(s)	144, 389, 402, 558, 693, 839
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	79, 567
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	480
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	484
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	5 cut(s)	13, 27, 630, 667, 811
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	6 cut(s)	61, 115, 124, 127, 251, 295
BspCNI	CTCAG	2 cut(s)	243, 374
BspEI	TCCGGA	1 cut(s)	838
BspMAI	CTGCAG	1 cut(s)	326
BspMI	ACCTGC	2 cut(s)	329, 1021
BspPI	GGATC	2 cut(s)	22, 638
BspT104I	TTCGAA	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	1025
BsrI	ACTGG	5 cut(s)	109, 315, 632, 646, 821
BssECI	CCNNGG	3 cut(s)	277, 679, 1008
BssMI	GATC	5 cut(s)	13, 27, 630, 667, 811
BssNI	GRCGYC	2 cut(s)	147, 647
BssT1I	CCWWGG	3 cut(s)	277, 679, 1008
Bst2UI	CCWGG	1 cut(s)	948
BstACI	GRCGYC	2 cut(s)	147, 647
BstBI	TTCGAA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	284, 478, 615
BstDEI	CTNAG	4 cut(s)	230, 361, 453, 971
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	174, 919, 1043
BstKTI	GATC	5 cut(s)	16, 30, 633, 670, 814
BstMAI	GTCTC	2 cut(s)	79, 567
BstMBI	GATC	5 cut(s)	13, 27, 630, 667, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 937
BstNI	CCWGG	1 cut(s)	948
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	401, 557, 691, 946
BstSFI	CTRYAG	1 cut(s)	322
BstV1I	GCAGC	7 cut(s)	141, 309, 336, 559, 604, 770, 924
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	13, 27
BstYI	RGATCY	2 cut(s)	13, 27
BsuI	GTATCC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	174, 919, 1043
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	89, 625
BveI	ACCTGC	2 cut(s)	329, 1021
Cac8I	GCNNGC	3 cut(s)	284, 478, 615
CseI	GACGC	3 cut(s)	61, 136, 636
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	5 cut(s)	278, 586, 614, 927, 1046
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	230, 361, 453, 971
DpnI	GATC	5 cut(s)	15, 29, 632, 669, 813
DpnII	GATC	5 cut(s)	13, 27, 630, 667, 811
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	3 cut(s)	277, 679, 1008
Eco31I	GGTCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	946
EcoT14I	CCWWGG	3 cut(s)	277, 679, 1008
EcoT22I	ATGCAT	2 cut(s)	835, 889
ErhI	CCWWGG	3 cut(s)	277, 679, 1008
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	281, 589, 617, 930, 1049
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	5 cut(s)	277, 585, 613, 926, 1045
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	9 cut(s)	127, 130, 295, 298, 325, 573, 618, 784, 938
FokI	GGATG	3 cut(s)	161, 926, 1050
Fsp4HI	GCNGC	9 cut(s)	127, 130, 295, 298, 325, 573, 618, 784, 938
GluI	GCNGC	9 cut(s)	127, 130, 295, 298, 325, 573, 618, 784, 938
GsuI	CTGGAG	2 cut(s)	85, 804
HapII	CCGG	6 cut(s)	144, 389, 402, 558, 693, 839
HgaI	GACGC	3 cut(s)	61, 136, 636
Hin1I	GRCGYC	2 cut(s)	147, 647
Hin1II	CATG	5 cut(s)	281, 589, 617, 930, 1049
HinfI	GANTC	7 cut(s)	245, 410, 746, 872, 923, 1013, 1064
HpaII	CCGG	6 cut(s)	144, 389, 402, 558, 693, 839
HphI	GGTGA	2 cut(s)	127, 450
Hpy166II	GTNNAC	1 cut(s)	896
Hpy188I	TCNGA	4 cut(s)	211, 409, 852, 1082
Hpy188III	TCNNGA	4 cut(s)	242, 414, 671, 839
Hpy8I	GTNNAC	1 cut(s)	896
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	4 cut(s)	229, 275, 354, 720
HpyCH4IV	ACGT	1 cut(s)	983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 937
HpyF3I	CTNAG	4 cut(s)	230, 361, 453, 971
HpySE526I	ACGT	1 cut(s)	983
Hsp92I	GRCGYC	2 cut(s)	147, 647
Hsp92II	CATG	5 cut(s)	281, 589, 617, 930, 1049
Kpn2I	TCCGGA	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	13, 27, 630, 667, 811
LmnI	GCTCC	3 cut(s)	9, 717, 823
Lsp1109I	GCAGC	7 cut(s)	141, 309, 336, 559, 604, 770, 924
LweI	GCATC	1 cut(s)	820
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	2 cut(s)	456, 990
MalI	GATC	5 cut(s)	15, 29, 632, 669, 813
MboI	GATC	5 cut(s)	13, 27, 630, 667, 811
MboII	GAAGA	4 cut(s)	359, 486, 689, 929
MflI	RGATCY	2 cut(s)	13, 27
MluCI	AATT	2 cut(s)	356, 794
MlyI	GAGTC	4 cut(s)	239, 755, 917, 1073
MmeI	TCCRAC	4 cut(s)	234, 387, 662, 1015
Mph1103I	ATGCAT	2 cut(s)	835, 889
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	2 cut(s)	421, 490
MslI	CAYNNNNRTG	2 cut(s)	378, 485
MspI	CCGG	6 cut(s)	144, 389, 402, 558, 693, 839
MspR9I	CCNGG	4 cut(s)	403, 559, 693, 948
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	948
MwoI	GCNNNNNNNGC	4 cut(s)	69, 123, 542, 937
NciI	CCSGG	3 cut(s)	403, 559, 693
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	13, 27, 630, 667, 811
NlaIII	CATG	5 cut(s)	281, 589, 617, 930, 1049
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	2 cut(s)	835, 889
NspI	RCATGY	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	484
PaeI	GCATGC	1 cut(s)	617
PctI	GAATGC	1 cut(s)	480
PdmI	GAANNNNTTC	2 cut(s)	421, 490
PfeI	GAWTC	3 cut(s)	410, 872, 1013
PflMI	CCANNNNNTGG	1 cut(s)	84
PkrI	GCNGC	9 cut(s)	128, 131, 296, 299, 326, 574, 619, 785, 939
PleI	GAGTC	4 cut(s)	239, 754, 917, 1072
PpsI	GAGTC	4 cut(s)	239, 754, 917, 1072
Psp6I	CCWGG	1 cut(s)	946
PspGI	CCWGG	1 cut(s)	946
PstI	CTGCAG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	13, 27
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	2 cut(s)	378, 485
SatI	GCNGC	9 cut(s)	127, 130, 295, 298, 325, 573, 618, 784, 938
Sau3AI	GATC	5 cut(s)	13, 27, 630, 667, 811
SchI	GAGTC	4 cut(s)	239, 755, 917, 1073
ScrFI	CCNGG	4 cut(s)	403, 559, 693, 948
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	378, 485
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	2 cut(s)	356, 794
SsiI	CCGC	6 cut(s)	61, 115, 124, 127, 251, 295
StyD4I	CCNGG	4 cut(s)	401, 557, 691, 946
StyI	CCWWGG	3 cut(s)	277, 679, 1008
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	3 cut(s)	484, 582, 810
TasI	AATT	2 cut(s)	356, 794
TauI	GCSGC	2 cut(s)	129, 297
TfiI	GAWTC	3 cut(s)	410, 872, 1013
TscAI	CASTG	2 cut(s)	89, 632
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	7 cut(s)	129, 297, 324, 572, 617, 783, 937
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	930
TspGWI	ACGGA	2 cut(s)	690, 854
TspRI	CASTG	2 cut(s)	89, 632
Van91I	CCANNNNNTGG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	2 cut(s)	421, 490
Zsp2I	ATGCAT	2 cut(s)	835, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.