RchiOBHm_Chr4g0398071

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002699
Physical Location & Seq
Reverse (-)
14451560 .. 14453597
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37027

Sequence Viewer

Length: 1101 bp
ATGTTCCACCAAGATGTCCTCACCCACATCCTTCTACACCTCCCCGTCAGGTCTCTCCTCCGCTTCAAATGCGTCTCTAAGCAGTGGCTCTCTGTTATCTCCAGCCCCCAGTTCCACCACCGCCGCAGCCGTCTCGCCTCCTCCGGCATCATCTTGTGTCAAACAACCGATCTCATTCACCACATATCCCTCGCCAGAAGCAACTCCGACCCACCCTTCACATCCCTGAGCTTCATCGACGACTCGGCAGGTGTCAAGATCCTCCAGTCCAGCAATGGCCTGCTCTTGTGCTGCAGCAGCCTTCACAAAGTTGGTATACGCCGCAGCTATTACATCTGCAATCCTTCCACAAAGCAAGTCTCGACTCTTCCTGAAGCAGATTGCGAGTCCAAAACTATTTCTGGAGTTTACTTAGCTTTTGATTCGTCCAAGTCGCCTCACTACCAAGTTGTGTCTGTTCGAAGTTGTTCTTCCCCATCGTCATCCAATAGCTACCGCATCGTTACTTACTCTTCCGAGACTCGGGCTTGGAGGCTTTCCGGGTCTCCTTTCGCTGCCCCAGACCTGGTGTTTGACAATGGAGTGCTTTGGAATGGTGCAATACACTGGATTAGTCCAACTGGGGATTCATTATGTTTTGACATCGATCAAGAACGCCTCGGAATATTGCCTAGTCTTCCATCAACTGATAAATGGAGCAACAGGAGGTTGAGGTATTTCGGCGAGTCCGGTGGCCATTTACACCTAATTGAAGTCTACGGCGCGACTCAATTCCATGTCTTTGAGATGGAGAGAGACTACTCTAGCTGGCTTCCAAAGTACCAAGTTGACATAGCAGCGATTGTTGATGCATTTCCACTGATGGTTTGGAACTACCCTAACGCTAATGATTCTGTTTTTTATGCATTTAATCTGCTACTTGTCAAAGAAGATGAAGAGGACTTAATTCTGTTGTTGCAAGTACCTGGGGAGTTTCTATCATATAATCTTGGGAATGGGACCTTCAAGAAGCTTGGTCCAATATCCACCACAACAAATATTGCATTTCAGATTGGATGTTTCCATGCATATCAGTTTACAGAAACTTTGGCTAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

366

Amino Acids

41.03

Weight (kDa)

6.52

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 40 1.8e-08 F-box domain
F-box-like PF12937 5 - 43 6e-06 F-box-like
FBA_3 PF08268 76 - 241 2.4e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 78 - 289 6.6e-10 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 80 - 241 1.9e-12 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 80 - 271 7.4e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 239
AccI GTMKAC 2 cut(s) 316, 756
AccII CGCG 1 cut(s) 764
AciI CCGC 5 cut(s) 61, 121, 124, 322, 496
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 821, 963
AfiI CCNNNNNNNGG 2 cut(s) 522, 565
AgsI TTSAA 3 cut(s) 67, 752, 1006
AjnI CCWGG 2 cut(s) 564, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 6 cut(s) 231, 327, 416, 492, 807, 1012
AluI AGCT 6 cut(s) 231, 327, 416, 492, 807, 1012
Alw26I GTCTC 7 cut(s) 57, 79, 137, 364, 512, 549, 789
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 2 cut(s) 277, 733
ApeKI GCWGC 7 cut(s) 126, 291, 294, 297, 324, 554, 836
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 999, 1016
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 2 cut(s) 13, 170
AsuII TTCGAA 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 2 cut(s) 999, 1016
BalI TGGCCA 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 7 cut(s) 138, 278, 306, 309, 336, 541, 848
BccI CCATC 4 cut(s) 484, 688, 781, 856
BceAI ACGGC 2 cut(s) 114, 775
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 566, 966
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 7 cut(s) 57, 79, 137, 364, 512, 549, 789
BfaI CTAG 3 cut(s) 672, 804, 1092
BfmI CTRYAG 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 9 cut(s) 124, 127, 292, 295, 298, 322, 325, 555, 837
BlsI GCNGC 9 cut(s) 125, 128, 293, 296, 299, 323, 326, 556, 838
Bme1390I CCNGG 3 cut(s) 541, 566, 966
Bme18I GGWCC 2 cut(s) 999, 1016
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 999, 1016
BmiI GGNNCC 1 cut(s) 1000
BmrFI CCNGG 3 cut(s) 541, 566, 966
BmrI ACTGGG 2 cut(s) 103, 630
BmsI GCATC 3 cut(s) 156, 507, 838
BmuI ACTGGG 2 cut(s) 103, 630
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 3 cut(s) 85, 248, 423
Bpu10I CCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 541
Bsa29I ATCGAT 1 cut(s) 645
BsaI GGTCTC 2 cut(s) 57, 549
BsaJI CCNNGG 2 cut(s) 658, 965
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 2 cut(s) 522, 565
Bse1I ACTGG 4 cut(s) 109, 265, 611, 625
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 566, 966
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 658, 965
BseGI GGATG 4 cut(s) 27, 221, 482, 1061
BseLI CCNNNNNNNGG 2 cut(s) 522, 565
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 4 cut(s) 109, 265, 611, 625
BseRI GAGGAG 2 cut(s) 47, 130
BseXI GCAGC 7 cut(s) 138, 278, 306, 309, 336, 541, 848
Bsh1236I CGCG 1 cut(s) 764
BshFI GGCC 2 cut(s) 279, 735
BshVI ATCGAT 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 3 cut(s) 144, 540, 729
BslFI GGGAC 1 cut(s) 1012
BslI CCNNNNNNNGG 2 cut(s) 522, 565
BsmAI GTCTC 7 cut(s) 57, 79, 137, 364, 512, 549, 789
BsmBI CGTCTC 2 cut(s) 79, 137
BsmFI GGGAC 1 cut(s) 1012
BsnI GGCC 2 cut(s) 279, 735
Bso31I GGTCTC 2 cut(s) 57, 549
BsoBI CYCGRG 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 3 cut(s) 169, 258, 646
BspACI CCGC 5 cut(s) 61, 121, 124, 322, 496
BspANI GGCC 2 cut(s) 279, 735
BspCNI CTCAG 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 645
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 1 cut(s) 1000
BspMAI CTGCAG 1 cut(s) 296
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 460
BspTNI GGTCTC 2 cut(s) 57, 549
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 4 cut(s) 109, 265, 611, 625
BssECI CCNNGG 2 cut(s) 658, 965
BssMI GATC 3 cut(s) 169, 258, 646
BssNAI GTATAC 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 566, 966
Bst6I CTCTTC 3 cut(s) 372, 517, 930
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 281, 809
BstDEI CTNAG 3 cut(s) 78, 227, 412
BstF5I GGATG 4 cut(s) 27, 221, 482, 1061
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 3 cut(s) 172, 261, 649
BstMAI GTCTC 7 cut(s) 57, 79, 137, 364, 512, 549, 789
BstMBI GATC 3 cut(s) 169, 258, 646
BstMWI GCNNNNNNNGC 2 cut(s) 69, 297
BstNI CCWGG 2 cut(s) 566, 966
BstSCI CCNGG 3 cut(s) 539, 564, 964
BstSFI CTRYAG 1 cut(s) 292
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 7 cut(s) 138, 278, 306, 309, 336, 541, 848
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 2 cut(s) 279, 735
BsuTUI ATCGAT 1 cut(s) 645
BtsCI GGATG 4 cut(s) 27, 221, 482, 1061
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 3 cut(s) 89, 604, 857
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 281, 809
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 2 cut(s) 999, 1016
ClaI ATCGAT 1 cut(s) 645
CseI GACGC 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 564
Csp6I GTAC 2 cut(s) 820, 962
CviAII CATG 2 cut(s) 776, 1064
CviQI GTAC 2 cut(s) 820, 962
DdeI CTNAG 3 cut(s) 78, 227, 412
DpnI GATC 3 cut(s) 171, 260, 648
DpnII GATC 3 cut(s) 169, 258, 646
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 372, 517, 930
EarI CTCTTC 3 cut(s) 372, 517, 930
Eco31I GGTCTC 2 cut(s) 57, 549
Eco47I GGWCC 2 cut(s) 999, 1016
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 564, 964
EcoT22I ATGCAT 3 cut(s) 853, 907, 1069
Esp3I CGTCTC 2 cut(s) 79, 137
FaeI CATG 2 cut(s) 779, 1067
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 1 cut(s) 1012
FatI CATG 2 cut(s) 775, 1063
FblI GTMKAC 2 cut(s) 316, 756
Fnu4HI GCNGC 9 cut(s) 124, 127, 292, 295, 298, 322, 325, 555, 837
FokI GGATG 4 cut(s) 14, 208, 469, 1068
Fsp4HI GCNGC 9 cut(s) 124, 127, 292, 295, 298, 322, 325, 555, 837
FspBI CTAG 3 cut(s) 672, 804, 1092
GlaI GCGC 1 cut(s) 763
GluI GCNGC 9 cut(s) 124, 127, 292, 295, 298, 322, 325, 555, 837
GsuI CTGGAG 3 cut(s) 85, 248, 423
HaeIII GGCC 2 cut(s) 279, 735
HapII CCGG 3 cut(s) 144, 540, 729
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 764
Hin1II CATG 2 cut(s) 779, 1067
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 9 cut(s) 242, 364, 386, 422, 520, 626, 725, 766, 890
HpaII CCGG 3 cut(s) 144, 540, 729
HphI GGTGA 2 cut(s) 13, 170
Hpy166II GTNNAC 5 cut(s) 317, 409, 757, 829, 1077
Hpy188I TCNGA 4 cut(s) 208, 517, 662, 1050
Hpy188III TCNNGA 6 cut(s) 256, 361, 371, 402, 650, 1006
Hpy8I GTNNAC 5 cut(s) 317, 409, 757, 829, 1077
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 5 cut(s) 41, 226, 311, 354, 1012
HpyCH4V TGCA 8 cut(s) 294, 339, 599, 851, 905, 958, 1043, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 297
HpyF3I CTNAG 3 cut(s) 78, 227, 412
Hsp92II CATG 2 cut(s) 779, 1067
HspAI GCGC 1 cut(s) 762
Kzo9I GATC 3 cut(s) 169, 258, 646
LmnI GCTCC 1 cut(s) 696
Lsp1109I GCAGC 7 cut(s) 138, 278, 306, 309, 336, 541, 848
LweI GCATC 3 cut(s) 156, 507, 838
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 3 cut(s) 672, 804, 1092
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 171, 260, 648
MboI GATC 3 cut(s) 169, 258, 646
MboII GAAGA 6 cut(s) 359, 462, 504, 668, 941, 947
MflI RGATCY 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 3 cut(s) 747, 770, 945
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 6 cut(s) 236, 358, 395, 514, 734, 760
MmeI TCCRAC 2 cut(s) 231, 641
Mox20I TGGCCA 1 cut(s) 735
Mph1103I ATGCAT 3 cut(s) 853, 907, 1069
MroXI GAANNNNTTC 1 cut(s) 466
MscI TGGCCA 1 cut(s) 735
MseI TTAA 2 cut(s) 909, 944
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 735
MspI CCGG 3 cut(s) 144, 540, 729
MspR9I CCNGG 3 cut(s) 541, 566, 966
MvaI CCWGG 2 cut(s) 566, 966
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 2 cut(s) 69, 297
NciI CCSGG 1 cut(s) 541
NdeII GATC 3 cut(s) 169, 258, 646
NlaIII CATG 2 cut(s) 779, 1067
NlaIV GGNNCC 1 cut(s) 1000
NmeAIII GCCGAG 1 cut(s) 224
NsiI ATGCAT 3 cut(s) 853, 907, 1069
NspV TTCGAA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 422, 626, 890
PkrI GCNGC 9 cut(s) 125, 128, 293, 296, 299, 323, 326, 556, 838
PleI GAGTC 6 cut(s) 236, 358, 394, 514, 733, 760
PpsI GAGTC 6 cut(s) 236, 358, 394, 514, 733, 760
PpuMI RGGWCCY 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 564, 964
PspGI CCWGG 2 cut(s) 564, 964
PspN4I GGNNCC 1 cut(s) 1000
PspPI GGNCC 2 cut(s) 999, 1016
PspPPI RGGWCCY 1 cut(s) 999
PstI CTGCAG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 2 cut(s) 821, 963
RsaNI GTAC 2 cut(s) 820, 962
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 909, 944
SatI GCNGC 9 cut(s) 124, 127, 292, 295, 298, 322, 325, 555, 837
Sau3AI GATC 3 cut(s) 169, 258, 646
Sau96I GGNCC 2 cut(s) 999, 1016
SchI GAGTC 6 cut(s) 236, 358, 395, 514, 734, 760
ScrFI CCNGG 3 cut(s) 541, 566, 966
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 3 cut(s) 156, 507, 838
SfcI CTRYAG 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 2 cut(s) 999, 1016
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 3 cut(s) 747, 770, 945
SsiI CCGC 5 cut(s) 61, 121, 124, 322, 496
SspI AATATT 2 cut(s) 666, 1039
SspMI CTAG 3 cut(s) 672, 804, 1092
StyD4I CCNGG 3 cut(s) 539, 564, 964
TaqI TCGA 4 cut(s) 237, 362, 460, 645
TasI AATT 3 cut(s) 747, 770, 945
TauI GCSGC 2 cut(s) 126, 324
TfiI GAWTC 3 cut(s) 422, 626, 890
Tru1I TTAA 2 cut(s) 909, 944
Tru9I TTAA 2 cut(s) 909, 944
TscAI CASTG 3 cut(s) 89, 611, 864
TseI GCWGC 7 cut(s) 126, 291, 294, 297, 324, 554, 836
TspDTI ATGAA 3 cut(s) 223, 618, 948
TspRI CASTG 3 cut(s) 89, 611, 864
VpaK11BI GGWCC 2 cut(s) 999, 1016
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 864
XmiI GTMKAC 2 cut(s) 316, 756
XmnI GAANNNNTTC 1 cut(s) 466
XspI CTAG 3 cut(s) 672, 804, 1092
Zsp2I ATGCAT 3 cut(s) 853, 907, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.