Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Forward (+)

992080 .. 992313

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGACGCTAGCCACAGCTAAAACGGCGCAAAGCTCCGATCATCGCTCCGACGAAAATGAATGGCGGCCGCATAAGAAGATGAAGAACCTCAAGCTTCCGATCATTGAGCCCGGCGGCCAGGAGCTCAAAATCGAAGCTGAGTCGCTCTCCTCGAGCCATACTCCAATATTTCGTAGTCTCAATGTCCGGAAGGCATTTGAATCAGAGAATGGTTTAGCTGTGCTTTGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

77

Amino Acids

8.6

Weight (kDa)

7.94

Isoelectric Point (pI)

66.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	3 cut(s)	64, 68, 114
AcoI	YGGCCR	2 cut(s)	65, 115
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	17, 33, 94, 124, 137, 218
AluI	AGCT	6 cut(s)	17, 33, 94, 124, 137, 218
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	2 cut(s)	65, 115
AspLEI	GCGC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	111
AsuNHI	GCTAGC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	151
BanII	GRGCYC	2 cut(s)	111, 126
Bbv12I	GWGCWC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	65, 68, 115
BlsI	GCNGC	3 cut(s)	66, 69, 116
Bme1390I	CCNGG	2 cut(s)	111, 119
BmeT110I	CYCGRG	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	111, 119
BmtI	GCTAGC	1 cut(s)	11
BplI	GAGNNNNNCTC	4 cut(s)	131, 163, 145, 177
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	139
BseX3I	CGGCCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	67, 117
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	111, 187
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	67, 117
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	111, 126
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	37, 99
BspACI	CCGC	3 cut(s)	64, 68, 114
BspANI	GGCC	2 cut(s)	67, 117
BspCNI	CTCAG	1 cut(s)	130
BspEI	TCCGGA	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	11
BssMI	GATC	2 cut(s)	37, 99
Bst2UI	CCWGG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	40, 102
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	37, 99
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	109, 117
BstZI	CGGCCG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	67, 117
BtgZI	GCGATG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	9
CciNI	GCGGCCGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	228
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	39, 101
DpnII	GATC	2 cut(s)	37, 99
EaeI	YGGCCR	2 cut(s)	65, 115
EagI	CGGCCG	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	111, 126
Eco52I	CGGCCG	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	111, 126
FaiI	YATR	2 cut(s)	72, 159
Fnu4HI	GCNGC	3 cut(s)	65, 68, 115
FriOI	GRGCYC	2 cut(s)	111, 126
Fsp4HI	GCNGC	3 cut(s)	65, 68, 115
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	65, 68, 115
HaeIII	GGCC	2 cut(s)	67, 117
HapII	CCGG	2 cut(s)	111, 187
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	140, 200
HpaII	CCGG	2 cut(s)	111, 187
Hpy188I	TCNGA	4 cut(s)	37, 49, 99, 205
Hpy188III	TCNNGA	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	138
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	37, 99
LmnI	GCTCC	3 cut(s)	38, 50, 121
LpnPI	CCDG	4 cut(s)	104, 124, 131, 200
MaeI	CTAG	1 cut(s)	8
MalI	GATC	2 cut(s)	39, 101
MboI	GATC	2 cut(s)	37, 99
MboII	GAAGA	2 cut(s)	88, 94
MhlI	GDGCHC	2 cut(s)	111, 126
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	98, 160
MroI	TCCGGA	1 cut(s)	186
MspI	CCGG	2 cut(s)	111, 187
MspR9I	CCNGG	2 cut(s)	111, 119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	37, 99
NheI	GCTAGC	1 cut(s)	7
NotI	GCGGCCGC	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	66, 69, 116
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspXI	VCTCGAGB	1 cut(s)	151
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	3 cut(s)	65, 68, 115
Sau3AI	GATC	2 cut(s)	37, 99
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	111, 119
SduI	GDGCHC	2 cut(s)	111, 126
SetI	ASST	7 cut(s)	19, 35, 90, 96, 126, 139, 220
Sfr274I	CTCGAG	1 cut(s)	151
SgeI	CNNG	9 cut(s)	20, 103, 122, 123, 130, 131, 163, 165, 199
SlaI	CTCGAG	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	89, 151
SmoI	CTYRAG	2 cut(s)	89, 151
SsiI	CCGC	3 cut(s)	64, 68, 114
SspI	AATATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	109, 117
TaqI	TCGA	2 cut(s)	132, 152
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	3 cut(s)	67, 70, 117
TfiI	GAWTC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	72, 95
XhoI	CTCGAG	1 cut(s)	151
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.