Rh4BG080500

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002699
Physical Location & Seq
Reverse (-)
14026392 .. 14027838
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG080500.1

Sequence Viewer

Length: 1125 bp
ATGCTCCCCCAAGATCTCATAACCGAGATCCTCCTCCGCCTCCCCGTCAAGTCCCTCCTCCGCTTCAAATGCGTCTCCAAGCAGTGGCTCTCTCTCATCTCCAGCCCCCAGTTCCGACACCACCGCCGCAGCCTCACCTCCCCCGGCGTCATCTTGTGTCGTACAACCGACCTCATCCACCACATATCACTACTTGGAAGCAACAACTCCGACCAGCCCTTCACTTCCCTCAGCTTCGTTCATGACTCGGCAGGTATCAAAATCCTTCAGTCCAGCCATGGCTTGCTCTTGTGCCGCAGCCTTTACAAACTGGGTAAAACCTGCAGCTATTACATCTGCAATCCTTCAACAAAGAAATTCTCAGTTCTTCCTCATTATAGTGCTGAACCGGATTATGTATCCGGGTCGGAATCCAGAACTATTTCCGGTGTTTATTTAGTTTTCAATCCCACTAAGTCACCTCACTACCAAGTTGCCTGCATTCGAATGTGTTCTTCCTCATTCAATAGCTACCAAGTTGAGATATACTCATCTGCCACTCGGGCTTGGAGGCTCTCCGGGTCTCCTTTCGCTGCCCCTTTCGACATGGTGTTTGACAATGGGGTGCTTTGGAATGCTGCAATACACTGGATCAGTCCAACTGGGGCGTCGTTATGCTTTGATATTGATCAAGAACGCCTTGGAACAATGCCTGGTCTTCCGTCAAATGAGAAATGGAGCAGGAGAAGGTTGAGGTATTTCGGCGAGTCTGGTGGGCATTTGCACTTAACTGAAATCCATGGCTGCACCTCTCAATTCCAAGTCTTTGAGATGGAGAGAGATTACTCTAGCTGGGTTCCCAAGTACAAGGTCGATCTTGCTCCAGTTGTAGATGCATTTCCAGAGATGGTTCGGAACTGCATTTTCCGTAATGATTCTGTTTCTTATGCATTTAGTCTACTCTGTTTGCAAGAGGATGAAGATGACTCATTGCTGTTGCTGCACATTCCAGGTAAGTTTGTATCATATAGTCTTAGGAATAGGACATTCAAGTTGCTTGGTTCAATATCCAAGGAATCAAATACTGCATTGCAGGTTGGATGTTTCCATGCTTATCAGTTTATGGAGTCTTTGGCTGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

374

Amino Acids

42.26

Weight (kDa)

8.54

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 40 1.7e-10 F-box domain
F-box-like PF12937 2 - 40 7.2e-06 F-box-like
FBA_3 PF08268 75 - 240 3.8e-10 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 82 - 279 6e-08 KIB1-4 beta-propeller
FBA_1 PF07734 85 - 294 1.7e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 242, 329, 1063
AccB7I CCANNNNNTGG 1 cut(s) 84
AccI GTMKAC 1 cut(s) 937
AciI CCGC 5 cut(s) 37, 61, 124, 127, 295
AclWI GGATC 2 cut(s) 22, 638
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 2 cut(s) 147, 647
AfaI GTAC 2 cut(s) 163, 845
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 6 cut(s) 67, 348, 445, 505, 1030, 1044
AjnI CCWGG 2 cut(s) 691, 988
AluBI AGCT 4 cut(s) 234, 327, 510, 831
AluI AGCT 4 cut(s) 234, 327, 510, 831
Alw26I GTCTC 2 cut(s) 79, 567
AlwI GGATC 2 cut(s) 22, 638
Ama87I CYCGRG 1 cut(s) 540
ApeKI GCWGC 7 cut(s) 129, 297, 324, 572, 617, 783, 979
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp700I GAANNNNTTC 2 cut(s) 421, 490
AsuC2I CCSGG 3 cut(s) 144, 403, 559
AsuHPI GGTGA 2 cut(s) 127, 450
AsuII TTCGAA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 7 cut(s) 141, 309, 336, 559, 604, 770, 966
BccI CCATC 2 cut(s) 805, 880
BciT130I CCWGG 2 cut(s) 693, 990
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 3 cut(s) 144, 403, 559
BcoDI GTCTC 2 cut(s) 79, 567
BfaI CTAG 1 cut(s) 828
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 3 cut(s) 242, 329, 1063
BfuI GTATCC 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 542
BglII AGATCT 1 cut(s) 13
BisI GCNGC 9 cut(s) 127, 130, 295, 298, 325, 573, 618, 784, 980
BlsI GCNGC 9 cut(s) 128, 131, 296, 299, 326, 574, 619, 785, 981
Bme1390I CCNGG 5 cut(s) 144, 403, 559, 693, 990
BmeT110I CYCGRG 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 837
BmrFI CCNGG 5 cut(s) 144, 403, 559, 693, 990
BmrI ACTGGG 3 cut(s) 103, 320, 651
BmsI GCATC 1 cut(s) 862
BmuI ACTGGG 3 cut(s) 103, 320, 651
BpiI GAAGAC 1 cut(s) 689
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 2 cut(s) 85, 846
Bpu10I CCTNAGC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 484
BpuMI CCSGG 3 cut(s) 144, 403, 559
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 2 cut(s) 147, 647
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 5 cut(s) 142, 277, 679, 778, 1050
BsaWI WCCGGW 2 cut(s) 388, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 5 cut(s) 109, 315, 632, 646, 863
Bse3DI GCAATG 2 cut(s) 968, 1067
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 2 cut(s) 693, 990
BseDI CCNNGG 5 cut(s) 142, 277, 679, 778, 1050
BseGI GGATG 3 cut(s) 174, 961, 1085
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 2 cut(s) 968, 1067
BseMII CTCAG 2 cut(s) 244, 375
BseNI ACTGG 5 cut(s) 109, 315, 632, 646, 863
BseRI GAGGAG 2 cut(s) 23, 47
BseXI GCAGC 7 cut(s) 141, 309, 336, 559, 604, 770, 966
BseYI CCCAGC 1 cut(s) 831
BsgI GTGCAG 2 cut(s) 769, 965
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 5 cut(s) 144, 389, 402, 426, 558
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 79, 567
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 2 cut(s) 480, 619
Bso31I GGTCTC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 484
Bsp143I GATC 5 cut(s) 13, 27, 630, 667, 853
Bsp19I CCATGG 2 cut(s) 277, 778
BspACI CCGC 5 cut(s) 37, 61, 124, 127, 295
BspCNI CTCAG 2 cut(s) 243, 374
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 837
BspMAI CTGCAG 1 cut(s) 326
BspMI ACCTGC 3 cut(s) 242, 329, 1063
BspPI GGATC 2 cut(s) 22, 638
BspT104I TTCGAA 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 968, 1067
BsrI ACTGG 5 cut(s) 109, 315, 632, 646, 863
BssECI CCNNGG 5 cut(s) 142, 277, 679, 778, 1050
BssMI GATC 5 cut(s) 13, 27, 630, 667, 853
BssNI GRCGYC 2 cut(s) 147, 647
BssT1I CCWWGG 4 cut(s) 277, 679, 778, 1050
Bst2UI CCWGG 2 cut(s) 693, 990
BstACI GRCGYC 2 cut(s) 147, 647
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 284, 478
BstDEI CTNAG 4 cut(s) 230, 361, 453, 1013
BstDSI CCRYGG 2 cut(s) 277, 778
BstF5I GGATG 3 cut(s) 174, 961, 1085
BstKTI GATC 5 cut(s) 16, 30, 633, 670, 856
BstMAI GTCTC 2 cut(s) 79, 567
BstMBI GATC 5 cut(s) 13, 27, 630, 667, 853
BstMWI GCNNNNNNNGC 3 cut(s) 69, 542, 979
BstNI CCWGG 2 cut(s) 693, 990
BstSCI CCNGG 5 cut(s) 142, 401, 557, 691, 988
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 7 cut(s) 141, 309, 336, 559, 604, 770, 966
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 2 cut(s) 13, 27
BstYI RGATCY 2 cut(s) 13, 27
BsuI GTATCC 1 cut(s) 409
BtgI CCRYGG 2 cut(s) 277, 778
BtsCI GGATG 3 cut(s) 174, 961, 1085
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 625
BveI ACCTGC 3 cut(s) 242, 329, 1063
Cac8I GCNNGC 2 cut(s) 284, 478
CciI TCATGA 1 cut(s) 241
CseI GACGC 3 cut(s) 61, 136, 636
Csp6I GTAC 2 cut(s) 162, 844
CviAII CATG 5 cut(s) 242, 278, 586, 779, 1088
CviQI GTAC 2 cut(s) 162, 844
DdeI CTNAG 4 cut(s) 230, 361, 453, 1013
DpnI GATC 5 cut(s) 15, 29, 632, 669, 855
DpnII GATC 5 cut(s) 13, 27, 630, 667, 853
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 4 cut(s) 277, 679, 778, 1050
Eco31I GGTCTC 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 691, 988
EcoT14I CCWWGG 4 cut(s) 277, 679, 778, 1050
EcoT22I ATGCAT 2 cut(s) 877, 931
ErhI CCWWGG 4 cut(s) 277, 679, 778, 1050
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 5 cut(s) 245, 281, 589, 782, 1091
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 241, 277, 585, 778, 1087
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 937
Fnu4HI GCNGC 9 cut(s) 127, 130, 295, 298, 325, 573, 618, 784, 980
FokI GGATG 3 cut(s) 161, 968, 1092
Fsp4HI GCNGC 9 cut(s) 127, 130, 295, 298, 325, 573, 618, 784, 980
FspBI CTAG 1 cut(s) 828
GluI GCNGC 9 cut(s) 127, 130, 295, 298, 325, 573, 618, 784, 980
GsaI CCCAGC 1 cut(s) 835
GsuI CTGGAG 2 cut(s) 85, 846
HapII CCGG 5 cut(s) 144, 389, 402, 426, 558
HgaI GACGC 3 cut(s) 61, 136, 636
Hin1I GRCGYC 2 cut(s) 147, 647
Hin1II CATG 5 cut(s) 245, 281, 589, 782, 1091
HinfI GANTC 7 cut(s) 245, 410, 746, 914, 965, 1055, 1106
HpaII CCGG 5 cut(s) 144, 389, 402, 426, 558
HphI GGTGA 2 cut(s) 127, 450
Hpy166II GTNNAC 1 cut(s) 938
Hpy188I TCNGA 5 cut(s) 116, 211, 409, 894, 1124
Hpy188III TCNNGA 4 cut(s) 242, 414, 671, 881
Hpy8I GTNNAC 1 cut(s) 938
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 4 cut(s) 229, 275, 354, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 542, 979
HpyF3I CTNAG 4 cut(s) 230, 361, 453, 1013
Hsp92I GRCGYC 2 cut(s) 147, 647
Hsp92II CATG 5 cut(s) 245, 281, 589, 782, 1091
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 5 cut(s) 13, 27, 630, 667, 853
LmnI GCTCC 3 cut(s) 9, 717, 865
Lsp1109I GCAGC 7 cut(s) 141, 309, 336, 559, 604, 770, 966
LweI GCATC 1 cut(s) 862
MaeI CTAG 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 456
MalI GATC 5 cut(s) 15, 29, 632, 669, 855
MboI GATC 5 cut(s) 13, 27, 630, 667, 853
MboII GAAGA 4 cut(s) 359, 486, 689, 971
MflI RGATCY 2 cut(s) 13, 27
MluCI AATT 2 cut(s) 356, 794
MlyI GAGTC 4 cut(s) 239, 755, 959, 1115
MmeI TCCRAC 5 cut(s) 139, 234, 387, 662, 1057
Mph1103I ATGCAT 2 cut(s) 877, 931
MroXI GAANNNNTTC 2 cut(s) 421, 490
MseI TTAA 1 cut(s) 767
MslI CAYNNNNRTG 2 cut(s) 378, 485
MspI CCGG 5 cut(s) 144, 389, 402, 426, 558
MspR9I CCNGG 5 cut(s) 144, 403, 559, 693, 990
Mva1269I GAATGC 2 cut(s) 480, 619
MvaI CCWGG 2 cut(s) 693, 990
MwoI GCNNNNNNNGC 3 cut(s) 69, 542, 979
NciI CCSGG 3 cut(s) 144, 403, 559
NcoI CCATGG 2 cut(s) 277, 778
NdeII GATC 5 cut(s) 13, 27, 630, 667, 853
NlaIII CATG 5 cut(s) 245, 281, 589, 782, 1091
NlaIV GGNNCC 1 cut(s) 837
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 456
NsiI ATGCAT 2 cut(s) 877, 931
NspV TTCGAA 1 cut(s) 484
PagI TCATGA 1 cut(s) 241
PctI GAATGC 2 cut(s) 480, 619
PdmI GAANNNNTTC 2 cut(s) 421, 490
PfeI GAWTC 3 cut(s) 410, 914, 1055
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 9 cut(s) 128, 131, 296, 299, 326, 574, 619, 785, 981
PleI GAGTC 4 cut(s) 239, 754, 959, 1114
PpsI GAGTC 4 cut(s) 239, 754, 959, 1114
Psp6I CCWGG 2 cut(s) 691, 988
PspFI CCCAGC 1 cut(s) 831
PspGI CCWGG 2 cut(s) 691, 988
PspN4I GGNNCC 1 cut(s) 837
PstI CTGCAG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 13, 27
RsaI GTAC 2 cut(s) 163, 845
RsaNI GTAC 2 cut(s) 162, 844
RseI CAYNNNNRTG 2 cut(s) 378, 485
SaqAI TTAA 1 cut(s) 767
SatI GCNGC 9 cut(s) 127, 130, 295, 298, 325, 573, 618, 784, 980
Sau3AI GATC 5 cut(s) 13, 27, 630, 667, 853
SchI GAGTC 4 cut(s) 239, 755, 959, 1115
ScrFI CCNGG 5 cut(s) 144, 403, 559, 693, 990
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 378, 485
Sse9I AATT 2 cut(s) 356, 794
SsiI CCGC 5 cut(s) 37, 61, 124, 127, 295
SspMI CTAG 1 cut(s) 828
StyD4I CCNGG 5 cut(s) 142, 401, 557, 691, 988
StyI CCWWGG 4 cut(s) 277, 679, 778, 1050
TaqI TCGA 3 cut(s) 484, 582, 852
TasI AATT 2 cut(s) 356, 794
TatI WGTACW 1 cut(s) 843
TauI GCSGC 2 cut(s) 129, 297
TfiI GAWTC 3 cut(s) 410, 914, 1055
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TscAI CASTG 2 cut(s) 89, 632
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 7 cut(s) 129, 297, 324, 572, 617, 783, 979
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 2 cut(s) 230, 972
TspGWI ACGGA 2 cut(s) 690, 896
TspRI CASTG 2 cut(s) 89, 632
Van91I CCANNNNNTGG 1 cut(s) 84
XapI RAATTY 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 937
XmnI GAANNNNTTC 2 cut(s) 421, 490
XspI CTAG 1 cut(s) 828
Zsp2I ATGCAT 2 cut(s) 877, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.