Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

1026685 .. 1026951

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCATTGCAGGCGGAGCAGTACCAGGTGGGCTCCTACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACGACAAGGGAGTTAAGTCCCCAACTGCAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAACTGACAGGACCCGCCCCGGATTTCACCCTGAAATCCGAGGTGGCCCTGCGGGGCCCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

9.1

Isoelectric Point (pI)

76.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	82, 216, 253
AclWI	GGATC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	136, 199
AluI	AGCT	2 cut(s)	136, 199
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	246, 256
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	212, 247, 256, 257
AsuC2I	CCSGG	2 cut(s)	55, 221
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	103, 260
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	55, 221
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	2 cut(s)	108, 168
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	55, 94, 221
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	4 cut(s)	212, 247, 256, 257
BmiI	GGNNCC	5 cut(s)	6, 102, 214, 257, 258
BmrFI	CCNGG	3 cut(s)	55, 94, 221
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	55, 221
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	27, 219, 240
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	27, 219, 240
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	248, 258
BsiSI	CCGG	2 cut(s)	54, 221
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	248, 258
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	103, 260
Bsp143I	GATC	2 cut(s)	112, 186
BspACI	CCGC	3 cut(s)	82, 216, 253
BspANI	GGCC	2 cut(s)	248, 258
BspLI	GGNNCC	5 cut(s)	6, 102, 214, 257, 258
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	27, 219, 240
BssMI	GATC	2 cut(s)	112, 186
Bst2UI	CCWGG	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	115, 189
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	112, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 84
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	53, 92, 219
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	248, 258
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	212, 247, 256, 257
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	6 cut(s)	53, 101, 136, 199, 248, 258
CviKI_1	RGCY	6 cut(s)	53, 101, 136, 199, 248, 258
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	114, 188
DpnII	GATC	2 cut(s)	112, 186
EciI	GGCGGA	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	103, 260
Eco47I	GGWCC	1 cut(s)	212
EcoO109I	RGGNCCY	2 cut(s)	212, 256
EcoRII	CCWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	103, 260
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	69
FauI	CCCGC	2 cut(s)	223, 246
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	103, 260
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	248, 258
HapII	CCGG	2 cut(s)	54, 221
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	2 cut(s)	123, 178
HpaII	CCGG	2 cut(s)	54, 221
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	117, 183, 241
HpyCH4V	TGCA	3 cut(s)	73, 78, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 84
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	112, 186
LmnI	GCTCC	3 cut(s)	84, 106, 133
Lsp1109I	GCAGC	1 cut(s)	62
MabI	ACCWGGT	1 cut(s)	92
MalI	GATC	2 cut(s)	114, 188
MboI	GATC	2 cut(s)	112, 186
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	103, 260
MnlI	CCTC	5 cut(s)	22, 29, 137, 177, 235
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 221
MspR9I	CCNGG	3 cut(s)	55, 94, 221
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	79, 84
NciI	CCSGG	2 cut(s)	55, 221
NdeII	GATC	2 cut(s)	112, 186
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	5 cut(s)	6, 102, 214, 257, 258
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	5 cut(s)	6, 102, 214, 257, 258
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	4 cut(s)	212, 247, 256, 257
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	112, 186
Sau96I	GGNCC	4 cut(s)	212, 247, 256, 257
ScrFI	CCNGG	3 cut(s)	55, 94, 221
SduI	GDGCHC	2 cut(s)	103, 260
SetI	ASST	5 cut(s)	98, 138, 201, 246, 265
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	3 cut(s)	82, 216, 253
StyD4I	CCNGG	3 cut(s)	53, 92, 219
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.