Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005401.1

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

429 .. 1727

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgttccaccaagatgtcctcacccacatccttctacacctccccgtcaagtctctcctccgtttcaaatgcgtctctaagcagtggctctctgttatctccagcccccagttccaccaccgccgccgccttctcgcctcctccggcatcatcttgtgtcaaacaaccgatctcattcaccacatatccctcgccagaagcaactccgacccacccttcacatccctgagcttcatcgacgactcggcaggtgtcaagatcctccagtccagcaatggcctgctcttgtgctgcagcagccttcacaaagttggtatacgccgcagctattacatctgcaatccttccacaaagcaagtctcgactcttcctgaagcagattgcgagtccaaaactatttctggagtttacttagcttttgattcttccaagtcgccttactaccaagttgtgtctgttcgaagttgttcttccccatcatcatccaatagctaccgcattgttacttactcttccgagactcgggcttggaggctttccgggtctcctttcgctgccccagacctggtgtttgacaatggagtgctttggaatggtgcaatacactggattaatccaactggggattcattatgttttgacatcgatcaagaacgcctcggaacattgcctagtcttccatcaactgataaatggagcaacaggaggttgaggtatttcggcgagtccggtggccatttacacctaattgaagtctacggcagcgcgactcaattccatgtctttgagatggagagagactactctagctggcttccaaagtaccaagttgacatagcagcgattgttgatgcatttccactgatggtttggaacttccctaacgctaatgattctgttttttatgcatttagtctgctatttgtcaaagaagatgaagaggactcaattctgttattgcaagtacctggtgagtttctatcatataatcttgggaatggggttaagaagacaaaccttacaggtgtctgcgctttagctaaggacaaccatggaaccctagtcgatggttctaggcgagtttgtttgtctggcttcttcctggaggttgaagctagagctgctttggaagctgtagaactgacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

382

Amino Acids

42.59

Weight (kDa)

6.35

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AccI	GTMKAC	2 cut(s)	316, 756
AccII	CGCG	1 cut(s)	767
AciI	CCGC	5 cut(s)	121, 124, 127, 322, 496
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	824, 966
AfiI	CCNNNNNNNGG	2 cut(s)	522, 565
AgsI	TTSAA	3 cut(s)	67, 752, 1112
AjnI	CCWGG	3 cut(s)	564, 967, 1101
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
AluBI	AGCT	9 cut(s)	231, 327, 416, 492, 810, 1040, 1115, 1121, 1133
AluI	AGCT	9 cut(s)	231, 327, 416, 492, 810, 1040, 1115, 1121, 1133
Alw26I	GTCTC	6 cut(s)	57, 79, 364, 512, 549, 792
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	2 cut(s)	277, 733
ApeKI	GCWGC	8 cut(s)	291, 294, 297, 324, 554, 762, 839, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	466
AspLEI	GCGC	2 cut(s)	767, 1034
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	3 cut(s)	13, 170, 983
AsuII	TTCGAA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	735
BbsI	GAAGAC	2 cut(s)	668, 1016
BbvI	GCAGC	8 cut(s)	278, 306, 309, 336, 541, 774, 851, 1108
BccI	CCATC	5 cut(s)	484, 688, 784, 859, 1061
BceAI	ACGGC	1 cut(s)	775
BciT130I	CCWGG	3 cut(s)	566, 969, 1103
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	6 cut(s)	57, 79, 364, 512, 549, 792
BfaI	CTAG	5 cut(s)	672, 807, 1061, 1074, 1116
BfmI	CTRYAG	2 cut(s)	292, 1134
BfuAI	ACCTGC	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	541, 566, 969, 1103
BmeT110I	CYCGRG	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	1057
BmrFI	CCNGG	4 cut(s)	541, 566, 969, 1103
BmrI	ACTGGG	2 cut(s)	103, 630
BmsI	GCATC	2 cut(s)	156, 841
BmuI	ACTGGG	2 cut(s)	103, 630
BpiI	GAAGAC	2 cut(s)	668, 1016
BpmI	CTGGAG	4 cut(s)	85, 248, 423, 1124
Bpu10I	CCTNAGC	2 cut(s)	227, 1041
Bpu14I	TTCGAA	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	658, 1051
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 565
Bse1I	ACTGG	4 cut(s)	109, 265, 611, 625
Bse3DI	GCAATG	2 cut(s)	280, 665
BseBI	CCWGG	3 cut(s)	566, 969, 1103
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	658, 1051
BseGI	GGATG	3 cut(s)	27, 221, 482
BseLI	CCNNNNNNNGG	2 cut(s)	522, 565
BseMI	GCAATG	2 cut(s)	280, 665
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	4 cut(s)	109, 265, 611, 625
BseRI	GAGGAG	2 cut(s)	47, 130
BseXI	GCAGC	8 cut(s)	278, 306, 309, 336, 541, 774, 851, 1108
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	279, 735
BshVI	ATCGAT	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	144, 540, 729
BslI	CCNNNNNNNGG	2 cut(s)	522, 565
BsmAI	GTCTC	6 cut(s)	57, 79, 364, 512, 549, 792
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	279, 735
Bso31I	GGTCTC	1 cut(s)	549
BsoBI	CYCGRG	1 cut(s)	522
Bsp119I	TTCGAA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	169, 258, 646
Bsp19I	CCATGG	1 cut(s)	1051
BspACI	CCGC	5 cut(s)	121, 124, 127, 322, 496
BspANI	GGCC	2 cut(s)	279, 735
BspCNI	CTCAG	1 cut(s)	219
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	1057
BspMAI	CTGCAG	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	549
BsrDI	GCAATG	2 cut(s)	280, 665
BsrI	ACTGG	4 cut(s)	109, 265, 611, 625
BssECI	CCNNGG	2 cut(s)	658, 1051
BssMI	GATC	3 cut(s)	169, 258, 646
BssNAI	GTATAC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	1051
Bst1107I	GTATAC	1 cut(s)	317
Bst2UI	CCWGG	3 cut(s)	566, 969, 1103
Bst6I	CTCTTC	3 cut(s)	372, 517, 933
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	281, 812
BstDEI	CTNAG	4 cut(s)	78, 227, 412, 1041
BstDSI	CCRYGG	1 cut(s)	1051
BstF5I	GGATG	3 cut(s)	27, 221, 482
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	767, 1034
BstKTI	GATC	3 cut(s)	172, 261, 649
BstMAI	GTCTC	6 cut(s)	57, 79, 364, 512, 549, 792
BstMBI	GATC	3 cut(s)	169, 258, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 1121, 1130
BstNI	CCWGG	3 cut(s)	566, 969, 1103
BstSCI	CCNGG	4 cut(s)	539, 564, 967, 1101
BstSFI	CTRYAG	2 cut(s)	292, 1134
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	8 cut(s)	278, 306, 309, 336, 541, 774, 851, 1108
BstV2I	GAAGAC	2 cut(s)	668, 1016
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BstZ17I	GTATAC	1 cut(s)	317
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	279, 735
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	1051
BtsCI	GGATG	3 cut(s)	27, 221, 482
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	3 cut(s)	89, 604, 860
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	281, 812
CfoI	GCGC	2 cut(s)	767, 1034
ClaI	ATCGAT	1 cut(s)	645
CseI	GACGC	1 cut(s)	61
CsiI	ACCWGGT	2 cut(s)	564, 967
Csp6I	GTAC	2 cut(s)	823, 965
CviAII	CATG	2 cut(s)	779, 1052
CviQI	GTAC	2 cut(s)	823, 965
DdeI	CTNAG	4 cut(s)	78, 227, 412, 1041
DpnI	GATC	3 cut(s)	171, 260, 648
DpnII	GATC	3 cut(s)	169, 258, 646
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	3 cut(s)	372, 517, 933
EarI	CTCTTC	3 cut(s)	372, 517, 933
Eco130I	CCWWGG	1 cut(s)	1051
Eco31I	GGTCTC	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	522
EcoRII	CCWGG	3 cut(s)	564, 967, 1101
EcoT14I	CCWWGG	1 cut(s)	1051
EcoT22I	ATGCAT	2 cut(s)	856, 910
ErhI	CCWWGG	1 cut(s)	1051
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	782, 1055
FaiI	YATR	9 cut(s)	185, 317, 634, 780, 836, 906, 985, 987, 1053
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FatI	CATG	2 cut(s)	778, 1051
FblI	GTMKAC	2 cut(s)	316, 756
FokI	GGATG	3 cut(s)	14, 208, 469
FspBI	CTAG	5 cut(s)	672, 807, 1061, 1074, 1116
GlaI	GCGC	2 cut(s)	766, 1033
GsuI	CTGGAG	4 cut(s)	85, 248, 423, 1124
HaeIII	GGCC	2 cut(s)	279, 735
HapII	CCGG	3 cut(s)	144, 540, 729
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	2 cut(s)	767, 1034
Hin1II	CATG	2 cut(s)	782, 1055
Hin6I	GCGC	2 cut(s)	765, 1032
HinP1I	GCGC	2 cut(s)	765, 1032
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HpaII	CCGG	3 cut(s)	144, 540, 729
HphI	GGTGA	3 cut(s)	13, 170, 983
Hpy166II	GTNNAC	4 cut(s)	317, 409, 757, 832
Hpy188I	TCNGA	3 cut(s)	208, 517, 662
Hpy188III	TCNNGA	5 cut(s)	256, 361, 371, 402, 650
Hpy8I	GTNNAC	4 cut(s)	317, 409, 757, 832
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	5 cut(s)	41, 140, 226, 311, 354
HpyCH4IV	ACGT	1 cut(s)	1145
HpyCH4V	TGCA	6 cut(s)	294, 339, 599, 854, 908, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 1121, 1130
HpyF3I	CTNAG	4 cut(s)	78, 227, 412, 1041
HpySE526I	ACGT	1 cut(s)	1145
Hsp92II	CATG	2 cut(s)	782, 1055
HspAI	GCGC	2 cut(s)	765, 1032
Kzo9I	GATC	3 cut(s)	169, 258, 646
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	8 cut(s)	278, 306, 309, 336, 541, 774, 851, 1108
LweI	GCATC	2 cut(s)	156, 841
MabI	ACCWGGT	2 cut(s)	564, 967
MaeI	CTAG	5 cut(s)	672, 807, 1061, 1074, 1116
MaeII	ACGT	1 cut(s)	1145
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	171, 260, 648
MboI	GATC	3 cut(s)	169, 258, 646
MboII	GAAGA	9 cut(s)	359, 417, 462, 504, 668, 944, 950, 1021, 1090
MflI	RGATCY	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	3 cut(s)	747, 773, 948
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	7 cut(s)	236, 358, 395, 514, 734, 763, 938
MmeI	TCCRAC	2 cut(s)	231, 641
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	2 cut(s)	856, 910
MroXI	GAANNNNTTC	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	2 cut(s)	612, 1005
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	3 cut(s)	144, 540, 729
MspR9I	CCNGG	4 cut(s)	541, 566, 969, 1103
MvaI	CCWGG	3 cut(s)	566, 969, 1103
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	3 cut(s)	297, 1121, 1130
NciI	CCSGG	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	1051
NdeII	GATC	3 cut(s)	169, 258, 646
NlaIII	CATG	2 cut(s)	782, 1055
NlaIV	GGNNCC	1 cut(s)	1057
NmeAIII	GCCGAG	1 cut(s)	224
NsiI	ATGCAT	2 cut(s)	856, 910
NspV	TTCGAA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	422, 626, 893
PfoI	TCCNGGA	1 cut(s)	1101
PleI	GAGTC	7 cut(s)	236, 358, 394, 514, 733, 763, 938
PpsI	GAGTC	7 cut(s)	236, 358, 394, 514, 733, 763, 938
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	3 cut(s)	564, 967, 1101
PspGI	CCWGG	3 cut(s)	564, 967, 1101
PspN4I	GGNNCC	1 cut(s)	1057
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	2 cut(s)	824, 966
RsaNI	GTAC	2 cut(s)	823, 965
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	612, 1005
Sau3AI	GATC	3 cut(s)	169, 258, 646
SchI	GAGTC	7 cut(s)	236, 358, 395, 514, 734, 763, 938
ScrFI	CCNGG	4 cut(s)	541, 566, 969, 1103
SexAI	ACCWGGT	2 cut(s)	564, 967
SfaNI	GCATC	2 cut(s)	156, 841
SfcI	CTRYAG	2 cut(s)	292, 1134
SfuI	TTCGAA	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	747, 773, 948
SsiI	CCGC	5 cut(s)	121, 124, 127, 322, 496
SspMI	CTAG	5 cut(s)	672, 807, 1061, 1074, 1116
StyD4I	CCNGG	4 cut(s)	539, 564, 967, 1101
StyI	CCWWGG	1 cut(s)	1051
TaiI	ACGT	1 cut(s)	1148
TaqI	TCGA	5 cut(s)	237, 362, 460, 645, 1065
TasI	AATT	3 cut(s)	747, 773, 948
TauI	GCSGC	3 cut(s)	126, 129, 324
TfiI	GAWTC	3 cut(s)	422, 626, 893
Tru1I	TTAA	2 cut(s)	612, 1005
Tru9I	TTAA	2 cut(s)	612, 1005
TscAI	CASTG	3 cut(s)	89, 611, 867
TseI	GCWGC	8 cut(s)	291, 294, 297, 324, 554, 762, 839, 1121
TspDTI	ATGAA	3 cut(s)	223, 618, 951
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	89, 611, 867
VspI	ATTAAT	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 867
XmiI	GTMKAC	2 cut(s)	316, 756
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	5 cut(s)	672, 807, 1061, 1074, 1116
Zsp2I	ATGCAT	2 cut(s)	856, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.