Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002699

Physical Location & Seq

Genomic Coordinates Reverse (-)

1023771 .. 1024466

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTACGCGCTCGGTTTAATGTCCTCTACAACTTTCATGAAGGAAATTTTCTCAAATTTTGACCCGAACAAAAAGTCAACTTTTAGGGCCACTAAAAGTACGGAAACGAAAAACCTCAAGGCTCGGGAGAGGCAGAAGAAGAGGTTCACTTCGGATGTTCATGTGCCCATGGGAACTAGTTCTACTGGTGCTGGTGGATCCATCAATCTCAATTTTGGGTCAACTAGTTCTACTGGTGTTGGTGGATCCATTGATCTCAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTCCTCCTCATCCTTCACTACTAGTACTAGTACTACTTTCTTTGACATGAATGAAGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTACTCCGGTGGCTGGGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCATCCGGAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

190

Amino Acids

20.44

Weight (kDa)

5.19

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07610
fragaria_vesca	FvH4_4g06300 FvH4_4g06310 FvH4_4g06320
malus_domestica	MD13G1235200.v1.1 MD16G1240100.v1.1
prunus_persica	Prupe.1G066300_v2.0.a1
pyrus_communis	pycom13g20770
rosa_chinensis	RchiOBHm_Chr4g0398041 RchiOBHm_Chr4g0398061 RchiOBHm_Chr4g0398071 RchiOBHm_Chr4g0398091
rosa_laevigata	RLG00000009386 RLG00000009387 RLG00000009388
rosa_multiflora	Rmu_sc0003773.1_g000001 Rmu_sc0005401.1_g000001 Rmu_sc0005401.1_g000011
rosa_roxburghii	Rroxscaffold_5G00342980 Rroxscaffold_5G00342990 Rroxscaffold_5G00343000
rosa_rugosa	Rorug04G0005600 Rorug04G0005700 Rorug04G0005800 Rorug04G0005900
rosa_samantha	Rh1DG147800 Rh4AG082300 Rh4AG082400 Rh4AG082700 Rh4BG079800 Rh4BG080400 Rh4BG080500 Rh4CG089700 Rh4DG075200 Rh4DG075300 Rh4DG075400
rosa_wichuraiana	Rw4G006870 Rw4G006880 Rw4G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	2 cut(s)	471, 501
AclWI	GGATC	4 cut(s)	192, 205, 240, 253
AcsI	RAATTY	2 cut(s)	45, 55
AfaI	GTAC	4 cut(s)	5, 100, 322, 328
AfiI	CCNNNNNNNGG	2 cut(s)	422, 495
AgsI	TTSAA	1 cut(s)	398
AhlI	ACTAGT	4 cut(s)	176, 224, 317, 323
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	535, 557
AluI	AGCT	2 cut(s)	535, 557
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	4 cut(s)	192, 205, 240, 253
Ama87I	CYCGRG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	279, 557
ApoI	RAATTY	2 cut(s)	45, 55
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	3 cut(s)	143, 178, 402
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	377, 437
AvaI	CYCGRG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	2 cut(s)	197, 245
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	266, 544
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	389
BcuI	ACTAGT	4 cut(s)	176, 224, 317, 323
BfaI	CTAG	4 cut(s)	177, 225, 318, 324
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	4 cut(s)	280, 472, 502, 558
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	4 cut(s)	281, 473, 503, 559
BmcAI	AGTACT	2 cut(s)	322, 328
Bme1390I	CCNGG	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	199, 247
BmrFI	CCNGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	101, 551
BsaJI	CCNNGG	2 cut(s)	168, 459
BsaWI	WCCGGW	2 cut(s)	488, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 495
Bse1I	ACTGG	2 cut(s)	190, 238
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	168, 459
BseGI	GGATG	3 cut(s)	160, 305, 548
BseLI	CCNNNNNNNGG	2 cut(s)	422, 495
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	2 cut(s)	190, 238
BseRI	GAGGAG	2 cut(s)	292, 390
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	266, 544
BseYI	CCCAGC	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	489, 552
BslI	CCNNNNNNNGG	2 cut(s)	422, 495
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	168, 537
Bsp13I	TCCGGA	1 cut(s)	551
Bsp143I	GATC	4 cut(s)	197, 245, 253, 382
Bsp1720I	GCTNAGC	1 cut(s)	536
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	471, 501
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	199, 247
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	4 cut(s)	192, 205, 240, 253
BsrI	ACTGG	2 cut(s)	190, 238
BssECI	CCNNGG	2 cut(s)	168, 459
BssMI	GATC	4 cut(s)	197, 245, 253, 382
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	411, 425, 512
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	536, 570
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	160, 305, 548
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	4 cut(s)	200, 248, 256, 385
BstMBI	GATC	4 cut(s)	197, 245, 253, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	477, 501, 566
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	266, 544
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	197, 245
BstYI	RGATCY	2 cut(s)	197, 245
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	160, 305, 548
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 407
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	4, 99, 321, 327
CviAII	CATG	8 cut(s)	37, 161, 169, 270, 343, 364, 418, 445
CviQI	GTAC	4 cut(s)	4, 99, 321, 327
DdeI	CTNAG	2 cut(s)	536, 570
DpnI	GATC	4 cut(s)	199, 247, 255, 384
DpnII	GATC	4 cut(s)	197, 245, 253, 382
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	8 cut(s)	40, 164, 172, 273, 346, 367, 421, 448
FatI	CATG	8 cut(s)	36, 160, 168, 269, 342, 363, 417, 444
Fnu4HI	GCNGC	4 cut(s)	280, 472, 502, 558
FokI	GGATG	3 cut(s)	167, 292, 535
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	4 cut(s)	280, 472, 502, 558
FspBI	CTAG	4 cut(s)	177, 225, 318, 324
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	280, 472, 502, 558
GsaI	CCCAGC	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	489, 552
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	8 cut(s)	40, 164, 172, 273, 346, 367, 421, 448
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	3 cut(s)	78, 222, 289
HindII	GTYRAC	3 cut(s)	78, 222, 289
HpaII	CCGG	2 cut(s)	489, 552
HphI	GGTGA	2 cut(s)	377, 437
Hpy166II	GTNNAC	4 cut(s)	78, 147, 222, 289
Hpy188I	TCNGA	2 cut(s)	154, 460
Hpy188III	TCNNGA	3 cut(s)	37, 125, 552
Hpy8I	GTNNAC	4 cut(s)	78, 147, 222, 289
HpyAV	CCTTC	3 cut(s)	34, 319, 413
HpyCH4III	ACNGT	3 cut(s)	411, 425, 512
HpyCH4V	TGCA	2 cut(s)	282, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	477, 501, 566
HpyF3I	CTNAG	2 cut(s)	536, 570
Hsp92II	CATG	8 cut(s)	40, 164, 172, 273, 346, 367, 421, 448
HspAI	GCGC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	4 cut(s)	197, 245, 253, 382
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	8 cut(s)	171, 177, 219, 374, 401, 481, 502, 565
Lsp1109I	GCAGC	2 cut(s)	266, 544
MaeI	CTAG	4 cut(s)	177, 225, 318, 324
MalI	GATC	4 cut(s)	199, 247, 255, 384
MboI	GATC	4 cut(s)	197, 245, 253, 382
MboII	GAAGA	5 cut(s)	148, 151, 362, 392, 460
MflI	RGATCY	2 cut(s)	197, 245
MhlI	GDGCHC	2 cut(s)	168, 537
MluCI	AATT	4 cut(s)	45, 55, 211, 259
MroI	TCCGGA	1 cut(s)	551
MroXI	GAANNNNTTC	3 cut(s)	143, 178, 402
MseI	TTAA	1 cut(s)	17
MspI	CCGG	2 cut(s)	489, 552
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	477, 501, 566
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	4 cut(s)	197, 245, 253, 382
NlaIII	CATG	8 cut(s)	40, 164, 172, 273, 346, 367, 421, 448
NlaIV	GGNNCC	2 cut(s)	199, 247
PagI	TCATGA	1 cut(s)	36
PdmI	GAANNNNTTC	3 cut(s)	143, 178, 402
PkrI	GCNGC	4 cut(s)	281, 473, 503, 559
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	199, 247
PspPI	GGNCC	1 cut(s)	87
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	197, 245
RsaI	GTAC	4 cut(s)	5, 100, 322, 328
RsaNI	GTAC	4 cut(s)	4, 99, 321, 327
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	4 cut(s)	280, 472, 502, 558
Sau3AI	GATC	4 cut(s)	197, 245, 253, 382
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	2 cut(s)	322, 328
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	168, 537
SetI	ASST	5 cut(s)	117, 146, 469, 537, 559
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	116, 530
SmoI	CTYRAG	2 cut(s)	116, 530
SpeI	ACTAGT	4 cut(s)	176, 224, 317, 323
Sse9I	AATT	4 cut(s)	45, 55, 211, 259
SsiI	CCGC	2 cut(s)	471, 501
SspMI	CTAG	4 cut(s)	177, 225, 318, 324
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	411, 425, 512
TasI	AATT	4 cut(s)	45, 55, 211, 259
TatI	WGTACW	2 cut(s)	320, 326
TauI	GCSGC	2 cut(s)	474, 504
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	2 cut(s)	289, 414
TseI	GCWGC	2 cut(s)	279, 557
TspDTI	ATGAA	7 cut(s)	25, 53, 149, 352, 359, 363, 461
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	289, 414
XapI	RAATTY	2 cut(s)	45, 55
XmnI	GAANNNNTTC	3 cut(s)	143, 178, 402
XspI	CTAG	4 cut(s)	177, 225, 318, 324
ZrmI	AGTACT	2 cut(s)	322, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.