Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Reverse (-)

14738353 .. 14740276

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G175100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCGGCTGCCGTGGGAGCTATCTCTGCAACCAAAGATGTTACTTTCAGTTCTCAAAGGGAGGAAGAGGAGTTAGTTAAGAATGATGACATGAAAAACACGGCTGCACTTGGTGATGATCAACCAAGCCTAAGCCAGCTTCCCGAAGGTGATGAACATAATGCGGAGGAGGGTGACCTAGACGAAGAGGATGATGAGGCTGCCGCATTGAAATCTGAAAAGGAATTGGTCCTTGGCCCTCAGTTTTCTCTCAAGGAGCAGCTTGAGAAAGATAAAGATGATGAGAGTTTGAGGAAATGGAAGGAACAACTTCTTGGGAGTGTTGATCTCTCTACTGCTGGAGAGAGCAAAGAACCAGAAGTGAAGGTCTTAAGCCTCACAATCATGTGCCGGGGCCGGCCGGATCTTGTCCTCCCAATTCCATTCACAAACAAACCCAAAAGCAGCCTCTTCACACTCAAAGACGGATGCCATTACCGCATCAGGTTTACATTTACTGTCTCCAAAAACATAGTCTCAGGCCTCAAGTACACCAATACAGTGTGGAAGACTGGTGTCAGAGTGGACAACTCAAAAAGAATGCTTGGAACTTTTAGCCCTAGGCAAGATCCTTATACATATGAGACTGAAGAAGAAACTGTCCCTTCAAGCATGTTTGCCAGGGGCTGGTATTGTGTGAGAACAAAATTTCTGGATGATGATGGAAAATGCTACTTGGACATGAGTTACTACTTTGAAATCCAGAAGAACTGGCCAAAATCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

256

Amino Acids

28.88

Weight (kDa)

4.8

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	666
AciI	CCGC	3 cut(s)	164, 204, 478
AclWI	GGATC	2 cut(s)	411, 602
AcoI	YGGCCR	2 cut(s)	398, 752
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	666
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	211, 648, 737
AjnI	CCWGG	1 cut(s)	659
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 297, 329
AluBI	AGCT	3 cut(s)	20, 139, 262
AluI	AGCT	3 cut(s)	20, 139, 262
Alw26I	GTCTC	3 cut(s)	505, 520, 617
AlwI	GGATC	2 cut(s)	411, 602
AlwNI	CAGNNNCTG	1 cut(s)	666
AoxI	GGCC	5 cut(s)	235, 394, 398, 520, 752
ApeKI	GCWGC	5 cut(s)	8, 104, 200, 259, 444
ApoI	RAATTY	1 cut(s)	686
ArsI	GACNNNNNNTTYG	2 cut(s)	498, 530
Asp700I	GAANNNNTTC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	229, 236, 394
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	125, 161, 185
AvaII	GGWCC	1 cut(s)	229
AvrII	CCTAGG	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	4 cut(s)	91, 187, 271, 456
BccI	CCATC	1 cut(s)	695
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	661
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	3 cut(s)	505, 520, 617
BfaI	CTAG	2 cut(s)	179, 600
BfrI	CTTAAG	1 cut(s)	370
BisI	GCNGC	6 cut(s)	9, 105, 201, 204, 260, 445
BlnI	CCTAGG	1 cut(s)	599
BlsI	GCNGC	6 cut(s)	10, 106, 202, 205, 261, 446
Bme1390I	CCNGG	2 cut(s)	392, 661
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	229, 236, 394
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	392, 661
BmsI	GCATC	2 cut(s)	458, 489
BoxI	GACNNNNGTC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	3 cut(s)	236, 284, 509
BpuMI	CCSGG	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	12, 232, 391, 599, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	556, 755
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	5 cut(s)	12, 232, 391, 599, 660
BseGI	GGATG	3 cut(s)	196, 473, 700
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	254, 531
BseNI	ACTGG	2 cut(s)	556, 755
BseRI	GAGGAG	2 cut(s)	83, 182
BseX3I	CGGCCG	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	91, 187, 271, 456
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	5 cut(s)	237, 396, 400, 522, 754
BsiEI	CGRYCG	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	391, 397, 401
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	3 cut(s)	505, 520, 617
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	5 cut(s)	237, 396, 400, 522, 754
Bsp143I	GATC	4 cut(s)	118, 325, 403, 607
BspACI	CCGC	3 cut(s)	164, 204, 478
BspANI	GGCC	5 cut(s)	237, 396, 400, 522, 754
BspCNI	CTCAG	2 cut(s)	253, 530
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	411, 602
BspTI	CTTAAG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	556, 755
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	5 cut(s)	12, 232, 391, 599, 660
BssMI	GATC	4 cut(s)	118, 325, 403, 607
BssT1I	CCWWGG	2 cut(s)	232, 599
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	3 cut(s)	499, 541, 640
Bst6I	CTCTTC	3 cut(s)	60, 180, 455
BstAFI	CTTAAG	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	137, 398
BstDEI	CTNAG	3 cut(s)	131, 240, 517
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	196, 473, 700
BstKTI	GATC	4 cut(s)	121, 328, 406, 610
BstMAI	GTCTC	3 cut(s)	505, 520, 617
BstMBI	GATC	4 cut(s)	118, 325, 403, 607
BstMCI	CGRYCG	1 cut(s)	401
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 477
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	655
BstPAI	GACNNNNGTC	1 cut(s)	554
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	390, 659
BstV1I	GCAGC	4 cut(s)	91, 187, 271, 456
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	403, 607
BstYI	RGATCY	2 cut(s)	403, 607
BstZI	CGGCCG	1 cut(s)	398
BsuRI	GGCC	5 cut(s)	237, 396, 400, 522, 754
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	196, 473, 700
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	2 cut(s)	137, 398
CaiI	CAGNNNCTG	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	229, 236, 394
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	4 cut(s)	91, 385, 652, 721
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	3 cut(s)	131, 240, 517
DpnI	GATC	4 cut(s)	120, 327, 405, 609
DpnII	GATC	4 cut(s)	118, 325, 403, 607
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	2 cut(s)	398, 752
EagI	CGGCCG	1 cut(s)	398
Eam1104I	CTCTTC	3 cut(s)	60, 180, 455
EarI	CTCTTC	3 cut(s)	60, 180, 455
EclXI	CGGCCG	1 cut(s)	398
Eco130I	CCWWGG	2 cut(s)	232, 599
Eco147I	AGGCCT	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	648
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	2 cut(s)	232, 599
ErhI	CCWWGG	2 cut(s)	232, 599
FaeI	CATG	4 cut(s)	94, 388, 655, 724
FaiI	YATR	9 cut(s)	92, 159, 386, 512, 615, 619, 621, 653, 722
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	4 cut(s)	90, 384, 651, 720
FauNDI	CATATG	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	9, 105, 201, 204, 260, 445
FokI	GGATG	3 cut(s)	203, 480, 707
FseI	GGCCGGCC	1 cut(s)	400
Fsp4HI	GCNGC	6 cut(s)	9, 105, 201, 204, 260, 445
FspBI	CTAG	2 cut(s)	179, 600
GluI	GCNGC	6 cut(s)	9, 105, 201, 204, 260, 445
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	237, 396, 400, 522, 754
HapII	CCGG	3 cut(s)	391, 397, 401
Hin1II	CATG	4 cut(s)	94, 388, 655, 724
HpaII	CCGG	3 cut(s)	391, 397, 401
HphI	GGTGA	3 cut(s)	125, 161, 185
Hpy166II	GTNNAC	3 cut(s)	489, 531, 565
Hpy188I	TCNGA	2 cut(s)	217, 560
Hpy188III	TCNNGA	4 cut(s)	143, 692, 742, 765
Hpy8I	GTNNAC	3 cut(s)	489, 531, 565
HpyAV	CCTTC	4 cut(s)	140, 295, 358, 654
HpyCH4III	ACNGT	3 cut(s)	499, 541, 640
HpyCH4V	TGCA	2 cut(s)	29, 107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 477
HpyF3I	CTNAG	3 cut(s)	131, 240, 517
Hsp92II	CATG	4 cut(s)	94, 388, 655, 724
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	118, 325, 403, 607
LmnI	GCTCC	2 cut(s)	17, 256
Lsp1109I	GCAGC	4 cut(s)	91, 187, 271, 456
LweI	GCATC	2 cut(s)	458, 489
MaeI	CTAG	2 cut(s)	179, 600
MaeIII	GTNAC	3 cut(s)	40, 173, 725
MalI	GATC	4 cut(s)	120, 327, 405, 609
MboI	GATC	4 cut(s)	118, 325, 403, 607
MboII	GAAGA	7 cut(s)	77, 197, 442, 559, 641, 644, 757
MflI	RGATCY	2 cut(s)	403, 607
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	3 cut(s)	224, 417, 686
MluNI	TGGCCA	1 cut(s)	754
Mox20I	TGGCCA	1 cut(s)	754
MroNI	GCCGGC	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	2 cut(s)	78, 371
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	754
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	3 cut(s)	391, 397, 401
MspR9I	CCNGG	2 cut(s)	392, 661
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 477
NaeI	GCCGGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	4 cut(s)	118, 325, 403, 607
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	4 cut(s)	94, 388, 655, 724
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	522
PctI	GAATGC	1 cut(s)	585
PdiI	GCCGGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	666
PkrI	GCNGC	6 cut(s)	10, 106, 202, 205, 261, 446
PshAI	GACNNNNGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	659
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	3 cut(s)	229, 236, 394
PstNI	CAGNNNCTG	1 cut(s)	666
PsuI	RGATCY	2 cut(s)	403, 607
RigI	GGCCGGCC	1 cut(s)	400
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	78, 371
SatI	GCNGC	6 cut(s)	9, 105, 201, 204, 260, 445
Sau3AI	GATC	4 cut(s)	118, 325, 403, 607
Sau96I	GGNCC	3 cut(s)	229, 236, 394
ScrFI	CCNGG	2 cut(s)	392, 661
SetI	ASST	7 cut(s)	22, 141, 151, 180, 264, 369, 488
SfaNI	GCATC	2 cut(s)	458, 489
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	4 cut(s)	251, 263, 370, 524
SmoI	CTYRAG	4 cut(s)	251, 263, 370, 524
Sse9I	AATT	3 cut(s)	224, 417, 686
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	3 cut(s)	164, 204, 478
SspMI	CTAG	2 cut(s)	179, 600
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	390, 659
StyI	CCWWGG	2 cut(s)	232, 599
TaaI	ACNGT	3 cut(s)	499, 541, 640
TasI	AATT	3 cut(s)	224, 417, 686
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	78, 371
Tru9I	TTAA	2 cut(s)	78, 371
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	5 cut(s)	8, 104, 200, 259, 444
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	107, 168
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	179, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.