Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

35096815 .. 35097759

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTCTCAAGGAGTAGCTTGAGAAGGATAAAGAAATGGAAGCAGCAACTTCTTGGGAGAGTTGATCTCTCTGCACTAGCTGTTGGAGAGAGTAAAGAAGCAGAAGTGAGGATCTTAAGTATGACTCTGATGTTCCAGGAGCGGCCTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAGTCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTTACTGTCTCAAAAAACATTGTCTCAGGCCTCAAGTTCACCGGCTCAATTTGGAAGACTGGTGTCAAAGTGCACAGTTCAAAAAGAATGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACCGAAGAAGATACTACCCCTTCAGGCATGCTTGCAAGGGGCAAGTATTTTGTCAGAATAAAATTTCTGGATGATGATGGAAAATGCTATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

182

Amino Acids

20.84

Weight (kDa)

9.97

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	27 - 182	1.1e-60	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	2 cut(s)	170, 398
AcsI	RAATTY	2 cut(s)	281, 482
AcuI	CTGAAG	1 cut(s)	426
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	18, 369, 533
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	3 cut(s)	6, 69, 131
AluI	AGCT	3 cut(s)	6, 69, 131
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	301, 316
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	170, 398
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	3 cut(s)	42, 194, 316
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	94, 208
ApoI	RAATTY	2 cut(s)	281, 482
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	43, 276
AsuHPI	GGTGA	2 cut(s)	214, 319
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	106, 195
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	301, 316
BfaI	CTAG	3 cut(s)	128, 519, 547
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	3 cut(s)	95, 194, 209
BlsI	GCNGC	3 cut(s)	96, 195, 210
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	43, 276
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	505
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpuEI	CTTGAG	3 cut(s)	43, 91, 305
BsaAI	YACGTR	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	496, 520
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	106, 195
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	44, 196, 318
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	274, 330
BsmAI	GTCTC	2 cut(s)	301, 316
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	44, 196, 318
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	115, 162, 403
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	3 cut(s)	44, 196, 318
BspCNI	CTCAG	1 cut(s)	326
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	170, 398
BspTI	CTTAAG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	3 cut(s)	115, 162, 403
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	295, 365
BstAFI	CTTAAG	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	3 cut(s)	8, 449, 453
BstDEI	CTNAG	2 cut(s)	47, 313
BstF5I	GGATG	2 cut(s)	496, 520
BstKTI	GATC	3 cut(s)	118, 165, 406
BstMAI	GTCTC	2 cut(s)	301, 316
BstMBI	GATC	3 cut(s)	115, 162, 403
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	451
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	363
BstSNI	TACGTA	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	106, 195
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	162, 403
BstYI	RGATCY	2 cut(s)	162, 403
BsuRI	GGCC	3 cut(s)	44, 196, 318
BtsCI	GGATG	2 cut(s)	496, 520
Cac8I	GCNNGC	3 cut(s)	8, 449, 453
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	43, 276
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	7 cut(s)	6, 44, 69, 131, 196, 318, 333
CviKI_1	RGCY	7 cut(s)	6, 44, 69, 131, 196, 318, 333
DdeI	CTNAG	2 cut(s)	47, 313
DpnI	GATC	3 cut(s)	117, 164, 405
DpnII	GATC	3 cut(s)	115, 162, 403
Eco105I	TACGTA	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	451
FaiI	YATR	4 cut(s)	173, 411, 417, 449
FatI	CATG	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	95, 194, 209
FokI	GGATG	2 cut(s)	503, 527
Fsp4HI	GCNGC	3 cut(s)	95, 194, 209
FspBI	CTAG	3 cut(s)	128, 519, 547
GluI	GCNGC	3 cut(s)	95, 194, 209
HaeIII	GGCC	3 cut(s)	44, 196, 318
HapII	CCGG	2 cut(s)	274, 330
Hin1II	CATG	1 cut(s)	451
HinfI	GANTC	2 cut(s)	175, 214
HpaII	CCGG	2 cut(s)	274, 330
HphI	GGTGA	2 cut(s)	214, 319
Hpy166II	GTNNAC	2 cut(s)	327, 361
Hpy188I	TCNGA	2 cut(s)	180, 476
Hpy188III	TCNNGA	3 cut(s)	274, 488, 538
Hpy8I	GTNNAC	2 cut(s)	327, 361
HpyAV	CCTTC	2 cut(s)	69, 450
HpyCH4III	ACNGT	2 cut(s)	295, 365
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	125, 361, 455
HpyF3I	CTNAG	2 cut(s)	47, 313
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	115, 162, 403
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	106, 195
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	128, 519, 547
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	22, 521
MalI	GATC	3 cut(s)	117, 164, 405
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	3 cut(s)	115, 162, 403
MboII	GAAGA	3 cut(s)	355, 437, 440
MflI	RGATCY	2 cut(s)	162, 403
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	4 cut(s)	31, 281, 336, 482
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	4 cut(s)	153, 254, 329, 405
MroI	TCCGGA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	18
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	2 cut(s)	274, 330
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	115, 162, 403
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	318
PctI	GAATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	96, 195, 210
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	414
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	43, 276
PsuI	RGATCY	2 cut(s)	162, 403
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	3 cut(s)	95, 194, 209
Sau3AI	GATC	3 cut(s)	115, 162, 403
Sau96I	GGNCC	2 cut(s)	43, 276
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	5 cut(s)	8, 71, 133, 389, 416
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	4 cut(s)	58, 70, 166, 320
SmoI	CTYRAG	4 cut(s)	58, 70, 166, 320
SnaBI	TACGTA	1 cut(s)	414
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	4 cut(s)	31, 281, 336, 482
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	3 cut(s)	128, 519, 547
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	295, 365
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	397
TasI	AATT	4 cut(s)	31, 281, 336, 482
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	94, 208
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	432
Vha464I	CTTAAG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	2 cut(s)	281, 482
XceI	RCATGY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	3 cut(s)	128, 519, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.