Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Reverse (-)

29581582 .. 29582689

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTGTAACCAAAGATGTTGGTTTCAGTTCTCAAGTTCAGGAAGTGGAGTTTAAGAATGATAAGAACAACAACAAGGATTCAGGTGGTGAACCAAGCCTGCATCAACGTGACGAAAATGATGAGCTTAAAGATGAGGTTGATCCAGATGAAGAGGACGAGCTTGCCACATTCAAATGTGACCAAGAATTGGTTCTTGGCCCTAAGTTTTCTTTCAAAGAGCAGCTTGAGAAGGATAAAGATGATGAGAGTTTGAGGAAAGGGAAGCAGCAACTTCTTGGGAGTGTTAATCTCTCTGCACTAGCTGTTGGAGAGAGTAAAGAAGCAGAAGTGAGGATTTTAAGTATGACACTGATGTTCCAGGAGCAGCCTGAGCTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTCACTGTCTCAAAAAACATTGTCTCAGGCCTCATGTTCACCGCCTCAATCTGGAAGACTGCTGTCAAAGTGCATAGTTCAAAAAGAATGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACCGAAGAAGATACTACCCCTTCAGGCATGTTTGCAAGGGGCAAGTATTTTGTGAGACTAAAATTTCTGGATGATGATGGAAAATGCCATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

241

Amino Acids

27.28

Weight (kDa)

5.22

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	53 - 240	1.8e-68	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	2 cut(s)	137, 572
AcsI	RAATTY	2 cut(s)	455, 656
AcuI	CTGAAG	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	190, 513
AgsI	TTSAA	4 cut(s)	175, 217, 543, 707
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	6 cut(s)	177, 180, 209, 212, 446, 478
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
AluBI	AGCT	5 cut(s)	127, 163, 226, 305, 376
AluI	AGCT	5 cut(s)	127, 163, 226, 305, 376
Alw26I	GTCTC	3 cut(s)	475, 490, 643
AlwI	GGATC	2 cut(s)	137, 572
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	2 cut(s)	199, 490
ApeKI	GCWGC	4 cut(s)	223, 268, 367, 382
ApoI	RAATTY	2 cut(s)	455, 656
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	200, 450
AsuHPI	GGTGA	3 cut(s)	101, 388, 493
AvaII	GGWCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	235, 280, 369, 379
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	3 cut(s)	475, 490, 643
BfaI	CTAG	3 cut(s)	302, 693, 721
BisI	GCNGC	4 cut(s)	224, 269, 368, 383
BlsI	GCNGC	4 cut(s)	225, 270, 369, 384
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	200, 450
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	112, 679
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	18, 248
BsaAI	YACGTR	1 cut(s)	588
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 513
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	670, 694
BseLI	CCNNNNNNNGG	2 cut(s)	190, 513
BseMII	CTCAG	2 cut(s)	363, 501
BseXI	GCAGC	4 cut(s)	235, 280, 369, 379
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	201, 492
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	190, 513
BsmAI	GTCTC	3 cut(s)	475, 490, 643
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	201, 492
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	142, 577
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	2 cut(s)	201, 492
BspCNI	CTCAG	2 cut(s)	364, 500
BspEI	TCCGGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	137, 572
BssMI	GATC	2 cut(s)	142, 577
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	101, 165
BstDEI	CTNAG	3 cut(s)	204, 372, 487
BstF5I	GGATG	2 cut(s)	670, 694
BstKTI	GATC	2 cut(s)	145, 580
BstMAI	GTCTC	3 cut(s)	475, 490, 643
BstMBI	GATC	2 cut(s)	142, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 382
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	625
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	360
BstSNI	TACGTA	1 cut(s)	588
BstV1I	GCAGC	4 cut(s)	235, 280, 369, 379
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	201, 492
BtsCI	GGATG	2 cut(s)	670, 694
BtsIMutI	CAGTG	2 cut(s)	350, 465
Cac8I	GCNNGC	2 cut(s)	101, 165
Cfr13I	GGNCC	2 cut(s)	200, 450
CviAII	CATG	2 cut(s)	496, 622
CviJI	RGCY	9 cut(s)	99, 127, 163, 201, 226, 305, 370, 376, 492
CviKI_1	RGCY	9 cut(s)	99, 127, 163, 201, 226, 305, 370, 376, 492
DdeI	CTNAG	3 cut(s)	204, 372, 487
DpnI	GATC	2 cut(s)	144, 579
DpnII	GATC	2 cut(s)	142, 577
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco105I	TACGTA	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	499, 625
FaiI	YATR	6 cut(s)	347, 497, 537, 585, 591, 623
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	495, 621
Fnu4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FokI	GGATG	2 cut(s)	677, 701
Fsp4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FspBI	CTAG	3 cut(s)	302, 693, 721
GluI	GCNGC	4 cut(s)	224, 269, 368, 383
HaeIII	GGCC	2 cut(s)	201, 492
HapII	CCGG	1 cut(s)	448
Hin1II	CATG	2 cut(s)	499, 625
HinfI	GANTC	2 cut(s)	80, 388
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	3 cut(s)	101, 388, 493
Hpy166II	GTNNAC	2 cut(s)	92, 501
Hpy188III	TCNNGA	6 cut(s)	41, 146, 448, 514, 662, 712
Hpy8I	GTNNAC	2 cut(s)	92, 501
HpyAV	CCTTC	2 cut(s)	226, 624
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	109, 587
HpyCH4V	TGCA	4 cut(s)	103, 299, 535, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 382
HpyF3I	CTNAG	3 cut(s)	204, 372, 487
HpySE526I	ACGT	2 cut(s)	109, 587
Hsp92II	CATG	2 cut(s)	499, 625
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	142, 577
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	4 cut(s)	235, 280, 369, 379
LweI	GCATC	2 cut(s)	112, 679
MaeI	CTAG	3 cut(s)	302, 693, 721
MaeII	ACGT	2 cut(s)	109, 587
MaeIII	GTNAC	4 cut(s)	7, 110, 179, 695
MalI	GATC	2 cut(s)	144, 579
MboI	GATC	2 cut(s)	142, 577
MboII	GAAGA	4 cut(s)	164, 529, 611, 614
MflI	RGATCY	1 cut(s)	577
MluCI	AATT	3 cut(s)	188, 455, 656
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	130, 148, 249, 327, 428, 503, 517, 579
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	54, 129, 288, 341
MslI	CAYNNNNRTG	3 cut(s)	108, 175, 687
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	373, 382
NdeII	GATC	2 cut(s)	142, 577
NlaIII	CATG	2 cut(s)	499, 625
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	2 cut(s)	110, 179
NspI	RCATGY	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	80, 388
PflMI	CCANNNNNTGG	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	225, 270, 369, 384
Ppu21I	YACGTR	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	2 cut(s)	200, 450
PsuI	RGATCY	1 cut(s)	577
RseI	CAYNNNNRTG	3 cut(s)	108, 175, 687
SaqAI	TTAA	4 cut(s)	54, 129, 288, 341
SatI	GCNGC	4 cut(s)	224, 269, 368, 383
Sau3AI	GATC	2 cut(s)	142, 577
Sau96I	GGNCC	2 cut(s)	200, 450
ScrFI	CCNGG	1 cut(s)	362
SfaNI	GCATC	2 cut(s)	112, 679
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	3 cut(s)	108, 175, 687
SmlI	CTYRAG	2 cut(s)	33, 227
SmoI	CTYRAG	2 cut(s)	33, 227
SnaBI	TACGTA	1 cut(s)	588
Sse9I	AATT	3 cut(s)	188, 455, 656
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	3 cut(s)	302, 693, 721
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	112, 590
TaqI	TCGA	1 cut(s)	571
TasI	AATT	3 cut(s)	188, 455, 656
TfiI	GAWTC	2 cut(s)	80, 388
Tru1I	TTAA	4 cut(s)	54, 129, 288, 341
Tru9I	TTAA	4 cut(s)	54, 129, 288, 341
TscAI	CASTG	2 cut(s)	357, 472
TseFI	GTSAC	2 cut(s)	110, 179
TseI	GCWGC	4 cut(s)	223, 268, 367, 382
Tsp45I	GTSAC	2 cut(s)	110, 179
TspDTI	ATGAA	2 cut(s)	165, 606
TspRI	CASTG	2 cut(s)	357, 472
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	2 cut(s)	455, 656
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	302, 693, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.