Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

32106779 .. 32107407

Gene Structure 629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTTGAAACTAATGAGCATGCAGAGAGTAAAGAAGCAGAAGTGCGGATTTTAAGTATGACACTGATGTTCCAGGAGCAGCCTGAACTTGTGCTGTCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTCACTGTCTCAAAAAACATTGTCTCAGGCCTCATGTCCACCGCCTCAGTCTGGAAGACTGGTGTCAAAGTGCACAGTTCAAAAAGAACGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACTGAAGAAGAAACTACCCCTTCAGGCATGTTTGCAAGGGGTAGGTATTTTGTGAAAACAAAATATCTGGATGATGATGGAAAATGCTATTGGGATGCTAGTTACTACTTTGAGATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

144

Amino Acids

16.59

Weight (kDa)

8.91

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	4 - 144	2e-51	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	2 cut(s)	46, 216
AclWI	GGATC	2 cut(s)	284, 415
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	312, 330
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	8, 255
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	4 cut(s)	158, 190, 379, 411
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	187, 202
Alw44I	GTGCAC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	284, 415
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	187, 202
BfaI	CTAG	2 cut(s)	405, 433
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	382, 406
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	213, 234
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	187, 202
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	289, 420
BspACI	CCGC	2 cut(s)	46, 216
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	212, 233
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	284, 415
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	289, 420
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	181, 251
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	199, 220
BstF5I	GGATG	2 cut(s)	382, 406
BstKTI	GATC	2 cut(s)	292, 423
BstMAI	GTCTC	2 cut(s)	187, 202
BstMBI	GATC	2 cut(s)	289, 420
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	2 cut(s)	23, 337
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	249
BstSNI	TACGTA	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	2 cut(s)	289, 420
BstYI	RGATCY	2 cut(s)	289, 420
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	382, 406
BtsIMutI	CAGTG	2 cut(s)	62, 177
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	3 cut(s)	20, 208, 334
CviJI	RGCY	2 cut(s)	82, 204
CviKI_1	RGCY	2 cut(s)	82, 204
DdeI	CTNAG	2 cut(s)	199, 220
DpnI	GATC	2 cut(s)	291, 422
DpnII	GATC	2 cut(s)	289, 420
Eco105I	TACGTA	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	312, 330
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	23, 211, 337
FaiI	YATR	6 cut(s)	21, 59, 209, 297, 303, 335
FatI	CATG	3 cut(s)	19, 207, 333
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	389, 413
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	2 cut(s)	405, 433
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	3 cut(s)	23, 211, 337
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	213, 247
Hpy188III	TCNNGA	4 cut(s)	160, 226, 374, 424
Hpy8I	GTNNAC	2 cut(s)	213, 247
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	181, 251
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	23, 247, 341
HpyF3I	CTNAG	2 cut(s)	199, 220
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	3 cut(s)	23, 211, 337
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	289, 420
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	405, 433
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	291, 422
MboI	GATC	2 cut(s)	289, 420
MboII	GAAGA	3 cut(s)	241, 323, 326
MflI	RGATCY	2 cut(s)	289, 420
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	4 cut(s)	140, 215, 229, 291
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	289, 420
NlaIII	CATG	3 cut(s)	23, 211, 337
NlaIV	GGNNCC	1 cut(s)	271
NspI	RCATGY	2 cut(s)	23, 337
PaeI	GCATGC	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	289, 420
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	289, 420
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	3 cut(s)	275, 302, 353
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	162
SnaBI	TACGTA	1 cut(s)	300
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	2 cut(s)	46, 216
SspMI	CTAG	2 cut(s)	405, 433
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	181, 251
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	98, 283
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	69, 184
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	69, 184
VneI	GTGCAC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	23, 337
XspI	CTAG	2 cut(s)	405, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.