Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

35010249 .. 35018316

Gene Structure 8068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCTATAACCAAAGATGTTGGTTCCAGTTCTCAAGTGCAGGAAGTGGAGTTTAAGAATGATAAGAACAACAACAAGGATGCAGGTGGTGAACGACGCCCGCATCAATGTGACGAAAATGATAAGCTTAAATATGAGGTTGATCCGGATGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTCTCAAGGAGCAGCTTGAGAAGGATAAAGTAAGTGGCCTTTGTTACTTGATAAATTTTCAGTTTTTGATTTCATTTATTATTGATGTTGTTCACATGATCAATTCTTCCAAGGATGATGAAAGTTTGAGGAAATGGAAGCAGCAACTTCTTGGGAGAGTTGATCTCTCCGCACTAGCTGTTGGAGCATGCGAGAGAGTAAAGAAGCGAGTGAGGATTTTAAGTATGACACCGATGTTCTTGGAACAACTTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTTACTGTCTCAAAAAACATTGTCTTAGGCCTCATGTTCACCGCCTCAATACGGAAGACCGGTGTCAAAGAAGTTGGGAACTGTGAGTCTGCGACAGATCTAACATGGGTTGTTGCGGAGTGCCTTGGTTTATGTCTGCCAATCTTTCTGAAAAATGCCTTGGTTTATGTTGGCATCCTAGTCACAGATTTTGTCAACTTGACACTTGTTGATCTTCCTGGGCTTACAAAAGTTTATGCTGAGGGTCAGCCCGATAGTATTGTGCAAGAAATTGAAAATATGGTTCGCTCCTACATTGAGAAGCCCAACAGTATAATTTCAGCAATTTCACCTACTAATCAAGATCTTGCTACATCTGATGCAATTAAAATCCCTTGTAAAGTGGATCCAACAGAATACGACGCCCCGTCAAAAATGGCTAAATGGAAATATCATCAACTCAGCTTGTTGGCGGTGTGTGTCTTTCTCGACTCTTGTTTGGAATTGGACGCCCAATTCGTGCTCGGTGAAGGGGCCTTCAAGGGGCTAGGGGACTTTTTGAAGGAGGAGTTGGACTCGGATTCGGAATATGAGTCGGAGAGTGAGGTGGTTGAGCCGGCTAATGAAGACGAGCTGGCTTTTCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

393

Amino Acids

43.98

Weight (kDa)

4.82

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	102 - 207	1.4e-23	RHO protein GDP dissociation inhibitor
Dynamin_N	PF00350	247 - 315	1.9e-11	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccIII	TCCGGA	2 cut(s)	145, 537
AciI	CCGC	5 cut(s)	101, 381, 594, 668, 1004
AclWI	GGATC	3 cut(s)	137, 932, 945
AcsI	RAATTY	2 cut(s)	265, 545
AcyI	GRCGYC	3 cut(s)	97, 954, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	603, 1074
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	6 cut(s)	175, 464, 827, 1072, 1093, 1175
AhdI	GACNNNNNGTC	1 cut(s)	958
AjnI	CCWGG	1 cut(s)	769
AjuI	GAANNNNNNNTTGG	6 cut(s)	180, 212, 695, 727, 1085, 1117
AluBI	AGCT	6 cut(s)	127, 163, 226, 389, 996, 1165
AluI	AGCT	6 cut(s)	127, 163, 226, 389, 996, 1165
Alw21I	GWGCWC	1 cut(s)	1056
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	3 cut(s)	137, 932, 945
Aor13HI	TCCGGA	2 cut(s)	145, 537
AoxI	GGCC	4 cut(s)	199, 247, 580, 1065
ApeKI	GCWGC	3 cut(s)	223, 352, 472
ApoI	RAATTY	2 cut(s)	265, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	1031, 1063
AsiGI	ACCGGT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	200, 540, 1065
AsuHPI	GGTGA	5 cut(s)	101, 478, 583, 873, 1070
AvaII	GGWCC	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	937
BbsI	GAAGAC	2 cut(s)	614, 1164
Bbv12I	GWGCWC	1 cut(s)	1056
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	3 cut(s)	235, 364, 459
BciT130I	CCWGG	1 cut(s)	771
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	3 cut(s)	386, 731, 1079
BfuAI	ACCTGC	1 cut(s)	74
BglII	AGATCT	2 cut(s)	649, 895
BisI	GCNGC	3 cut(s)	224, 353, 473
BlsI	GCNGC	3 cut(s)	225, 354, 474
Bme1390I	CCNGG	1 cut(s)	771
Bme18I	GGWCC	1 cut(s)	540
BmeRI	GACNNNNNGTC	1 cut(s)	958
BmgT120I	GGNCC	3 cut(s)	200, 540, 1065
BmiI	GGNNCC	3 cut(s)	25, 939, 1066
BmrFI	CCNGG	1 cut(s)	771
BmsI	GCATC	4 cut(s)	70, 112, 735, 901
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	614, 1164
BplI	GAGNNNNNCTC	4 cut(s)	360, 392, 1091, 1123
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	3 cut(s)	18, 200, 248
BsaHI	GRCGYC	3 cut(s)	97, 954, 1041
BsaJI	CCNNGG	4 cut(s)	321, 676, 711, 770
BsaWI	WCCGGW	3 cut(s)	145, 537, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 1074
Bse118I	RCCGGY	2 cut(s)	611, 1147
Bse1I	ACTGG	1 cut(s)	27
BseAI	TCCGGA	2 cut(s)	145, 537
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	4 cut(s)	321, 676, 711, 770
BseGI	GGATG	5 cut(s)	85, 154, 163, 331, 726
BseLI	CCNNNNNNNGG	2 cut(s)	603, 1074
BseMII	CTCAG	2 cut(s)	783, 1006
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	1112
BseXI	GCAGC	3 cut(s)	235, 364, 459
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	201, 249, 582, 1067
BshTI	ACCGGT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	1056
BsiSI	CCGG	4 cut(s)	146, 538, 612, 1148
BslFI	GGGAC	1 cut(s)	1097
BslI	CCNNNNNNNGG	2 cut(s)	603, 1074
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	1097
BsnI	GGCC	4 cut(s)	201, 249, 582, 1067
Bsp1286I	GDGCHC	1 cut(s)	1056
Bsp13I	TCCGGA	2 cut(s)	145, 537
Bsp143I	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
BspACI	CCGC	5 cut(s)	101, 381, 594, 668, 1004
BspANI	GGCC	4 cut(s)	201, 249, 582, 1067
BspCNI	CTCAG	2 cut(s)	784, 1005
BspEI	TCCGGA	2 cut(s)	145, 537
BspLI	GGNNCC	3 cut(s)	25, 939, 1066
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	3 cut(s)	137, 932, 945
BsrFI	RCCGGY	2 cut(s)	611, 1147
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	2 cut(s)	611, 1147
BssECI	CCNNGG	4 cut(s)	321, 676, 711, 770
BssMI	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
BssNI	GRCGYC	3 cut(s)	97, 954, 1041
BssT1I	CCWWGG	3 cut(s)	321, 676, 711
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	3 cut(s)	559, 635, 863
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	3 cut(s)	97, 954, 1041
BstC8I	GCNNGC	5 cut(s)	101, 165, 400, 1149, 1167
BstDEI	CTNAG	4 cut(s)	204, 577, 792, 992
BstF5I	GGATG	5 cut(s)	85, 154, 163, 331, 726
BstKTI	GATC	7 cut(s)	145, 312, 376, 652, 766, 898, 940
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	771
BstNSI	RCATGY	1 cut(s)	402
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	235, 364, 459
BstV2I	GAAGAC	2 cut(s)	614, 1164
BstX2I	RGATCY	3 cut(s)	649, 895, 937
BstYI	RGATCY	3 cut(s)	649, 895, 937
BsuRI	GGCC	4 cut(s)	201, 249, 582, 1067
BtsCI	GGATG	5 cut(s)	85, 154, 163, 331, 726
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	5 cut(s)	101, 165, 400, 1149, 1167
Cfr10I	RCCGGY	2 cut(s)	611, 1147
Cfr13I	GGNCC	3 cut(s)	200, 540, 1065
CseI	GACGC	3 cut(s)	105, 962, 1049
CspAI	ACCGGT	1 cut(s)	611
CviAII	CATG	4 cut(s)	307, 399, 586, 657
DdeI	CTNAG	4 cut(s)	204, 577, 792, 992
DpnI	GATC	7 cut(s)	144, 311, 375, 651, 765, 897, 939
DpnII	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
DriI	GACNNNNNGTC	1 cut(s)	958
Eam1104I	CTCTTC	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	321, 676, 711
Eco147I	AGGCCT	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	1065
EcoRII	CCWGG	1 cut(s)	769
EcoT14I	CCWWGG	3 cut(s)	321, 676, 711
ErhI	CCWWGG	3 cut(s)	321, 676, 711
FaeI	CATG	4 cut(s)	310, 402, 589, 660
FaqI	GGGAC	1 cut(s)	1097
FatI	CATG	4 cut(s)	306, 398, 585, 656
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	224, 353, 473
FokI	GGATG	5 cut(s)	92, 161, 170, 338, 713
Fsp4HI	GCNGC	3 cut(s)	224, 353, 473
FspBI	CTAG	3 cut(s)	386, 731, 1079
GluI	GCNGC	3 cut(s)	224, 353, 473
HaeIII	GGCC	4 cut(s)	201, 249, 582, 1067
HapII	CCGG	4 cut(s)	146, 538, 612, 1148
HgaI	GACGC	3 cut(s)	105, 962, 1049
Hin1I	GRCGYC	3 cut(s)	97, 954, 1041
Hin1II	CATG	4 cut(s)	310, 402, 589, 660
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	6 cut(s)	478, 638, 1022, 1106, 1112, 1124
HpaII	CCGG	4 cut(s)	146, 538, 612, 1148
HphI	GGTGA	5 cut(s)	101, 478, 583, 873, 1070
Hpy166II	GTNNAC	4 cut(s)	92, 304, 591, 748
Hpy188I	TCNGA	5 cut(s)	702, 910, 1111, 1117, 1129
Hpy188III	TCNNGA	4 cut(s)	146, 538, 893, 1019
Hpy8I	GTNNAC	4 cut(s)	92, 304, 591, 748
Hpy99I	CGWCG	2 cut(s)	99, 956
HpyAV	CCTTC	4 cut(s)	226, 1055, 1078, 1087
HpyCH4III	ACNGT	3 cut(s)	559, 635, 863
HpyCH4V	TGCA	4 cut(s)	40, 83, 817, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	4 cut(s)	204, 577, 792, 992
Hsp92I	GRCGYC	3 cut(s)	97, 954, 1041
Hsp92II	CATG	4 cut(s)	310, 402, 589, 660
Kpn2I	TCCGGA	2 cut(s)	145, 537
KroI	GCCGGC	1 cut(s)	1147
KroNI	GCCGGC	1 cut(s)	1149
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
LmnI	GCTCC	3 cut(s)	220, 395, 845
Lsp1109I	GCAGC	3 cut(s)	235, 364, 459
LweI	GCATC	4 cut(s)	70, 112, 735, 901
MaeI	CTAG	3 cut(s)	386, 731, 1079
MaeIII	GTNAC	4 cut(s)	110, 179, 254, 733
MalI	GATC	7 cut(s)	144, 311, 375, 651, 765, 897, 939
MboI	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
MboII	GAAGA	5 cut(s)	164, 309, 619, 758, 1169
MflI	RGATCY	3 cut(s)	649, 895, 937
MhlI	GDGCHC	1 cut(s)	1056
MlyI	GAGTC	4 cut(s)	647, 1016, 1100, 1133
MmeI	TCCRAC	4 cut(s)	373, 965, 1083, 1107
MroI	TCCGGA	2 cut(s)	145, 537
MroNI	GCCGGC	1 cut(s)	1147
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	54, 129, 431, 918
MslI	CAYNNNNRTG	2 cut(s)	108, 175
MspI	CCGG	4 cut(s)	146, 538, 612, 1148
MspR9I	CCNGG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	771
MwoI	GCNNNNNNNGC	1 cut(s)	395
NaeI	GCCGGC	1 cut(s)	1149
NdeII	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
NgoMIV	GCCGGC	1 cut(s)	1147
NlaIII	CATG	4 cut(s)	310, 402, 589, 660
NlaIV	GGNNCC	3 cut(s)	25, 939, 1066
NmuCI	GTSAC	3 cut(s)	110, 179, 733
NspI	RCATGY	1 cut(s)	402
PaeI	GCATGC	1 cut(s)	402
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PdiI	GCCGGC	1 cut(s)	1149
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	478, 1112
PinAI	ACCGGT	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	225, 354, 474
PleI	GAGTC	4 cut(s)	646, 1016, 1100, 1132
PpsI	GAGTC	4 cut(s)	646, 1016, 1100, 1132
PshAI	GACNNNNGTC	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	3 cut(s)	25, 939, 1066
PspPI	GGNCC	3 cut(s)	200, 540, 1065
PsuI	RGATCY	3 cut(s)	649, 895, 937
RseI	CAYNNNNRTG	2 cut(s)	108, 175
SaqAI	TTAA	4 cut(s)	54, 129, 431, 918
SatI	GCNGC	3 cut(s)	224, 353, 473
Sau3AI	GATC	7 cut(s)	142, 309, 373, 649, 763, 895, 937
Sau96I	GGNCC	3 cut(s)	200, 540, 1065
SchI	GAGTC	4 cut(s)	647, 1016, 1100, 1133
ScrFI	CCNGG	1 cut(s)	771
SduI	GDGCHC	1 cut(s)	1056
SfaNI	GCATC	4 cut(s)	70, 112, 735, 901
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	108, 175
SmlI	CTYRAG	3 cut(s)	33, 215, 227
SmoI	CTYRAG	3 cut(s)	33, 215, 227
SphI	GCATGC	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	5 cut(s)	101, 381, 594, 668, 1004
SspMI	CTAG	3 cut(s)	386, 731, 1079
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	769
StyI	CCWWGG	3 cut(s)	321, 676, 711
TaaI	ACNGT	3 cut(s)	559, 635, 863
TaqI	TCGA	1 cut(s)	1020
TfiI	GAWTC	2 cut(s)	478, 1112
Tru1I	TTAA	4 cut(s)	54, 129, 431, 918
Tru9I	TTAA	4 cut(s)	54, 129, 431, 918
TseFI	GTSAC	3 cut(s)	110, 179, 733
TseI	GCWGC	3 cut(s)	223, 352, 472
Tsp45I	GTSAC	3 cut(s)	110, 179, 733
TspDTI	ATGAA	4 cut(s)	165, 273, 345, 1170
TspGWI	ACGGA	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	2 cut(s)	265, 545
XceI	RCATGY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	386, 731, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.