Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

32300562 .. 32301668

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCTATAACCAAAGATGTTGGTTCCAGTTCTCAAGTGCAAGAAGTGGAGTTTAAGAAAGATGAGAACAGCAACAAGGATGCAGGTGGTGAACCAAGCCTACATCAACGTGACGAAAATGATAAGCTTAAAGATGAGGTTGATGCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTCACAAAGAATTAGTTCTTGGCCCTAAGTTTTCTCTCAAGGAGCAGCTTGAGAAGGATAAAGATGATGAAAGTTTGAGGAAATGGAAGCAGCAACTTCTTGAGAGAGTTGATCTCTCCGCACTAGCTAGTAAAGAAGCAGAAGTGAGGATTTTAAGTATGACACTGATGTTCCAGGAGCACCCTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTTACTGTCTCAAAAAACATTGTCTCAGGCCTCAAGTTCACCGCCGCTGTCTGGAAGACTGGTGTCAAAGTGCATAGTTCAAAAAGAATGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAATCGAAGAAGAGACTACCCCTTCAGGCATGCTTGCAAGGGGCAAGTATTTTGTGAGAATAAAATTTCTGGATGATGATGGAAAATGCTATTTGGATTCTAGTTACTACTTTGAAATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

237

Amino Acids

27.15

Weight (kDa)

5.93

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	52 - 237	2.5e-70	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	3 cut(s)	297, 495, 498
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	2 cut(s)	446, 647
AcuI	CTGAAG	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	3 cut(s)	175, 534, 698
AjnI	CCWGG	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
AluBI	AGCT	4 cut(s)	127, 163, 226, 305
AluI	AGCT	4 cut(s)	127, 163, 226, 305
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	466, 481, 590
AlwI	GGATC	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	438
AoxI	GGCC	2 cut(s)	199, 481
ApeKI	GCWGC	3 cut(s)	223, 268, 373
ApoI	RAATTY	2 cut(s)	446, 647
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	200, 441
AsuHPI	GGTGA	3 cut(s)	101, 379, 484
AvaII	GGWCC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	235, 280, 360
BccI	CCATC	1 cut(s)	656
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	466, 481, 590
BfaI	CTAG	4 cut(s)	302, 306, 684, 712
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	224, 269, 374, 498
BlsI	GCNGC	4 cut(s)	225, 270, 375, 499
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	200, 441
BmiI	GGNNCC	2 cut(s)	25, 550
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	70, 133
BoxI	GACNNNNGTC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	515
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpuEI	CTTGAG	5 cut(s)	18, 200, 248, 299, 470
BsaAI	YACGTR	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	27, 517
BseAI	TCCGGA	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	353
BseGI	GGATG	3 cut(s)	85, 163, 661
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	27, 517
BseXI	GCAGC	3 cut(s)	235, 280, 360
BshFI	GGCC	2 cut(s)	201, 483
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	466, 481, 590
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	201, 483
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	289, 568
BspACI	CCGC	3 cut(s)	297, 495, 498
BspANI	GGCC	2 cut(s)	201, 483
BspCNI	CTCAG	1 cut(s)	491
BspEI	TCCGGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	25, 550
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	27, 517
BssMI	GATC	2 cut(s)	289, 568
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	2 cut(s)	147, 588
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	165, 614, 618
BstDEI	CTNAG	2 cut(s)	204, 478
BstF5I	GGATG	3 cut(s)	85, 163, 661
BstKTI	GATC	2 cut(s)	292, 571
BstMAI	GTCTC	3 cut(s)	466, 481, 590
BstMBI	GATC	2 cut(s)	289, 568
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	616
BstPAI	GACNNNNGTC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	351
BstSNI	TACGTA	1 cut(s)	579
BstV1I	GCAGC	3 cut(s)	235, 280, 360
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	201, 483
BtsCI	GGATG	3 cut(s)	85, 163, 661
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	165, 614, 618
Cfr13I	GGNCC	2 cut(s)	200, 441
CviAII	CATG	1 cut(s)	613
CviJI	RGCY	7 cut(s)	99, 127, 163, 201, 226, 305, 483
CviKI_1	RGCY	7 cut(s)	99, 127, 163, 201, 226, 305, 483
DdeI	CTNAG	2 cut(s)	204, 478
DpnI	GATC	2 cut(s)	291, 570
DpnII	GATC	2 cut(s)	289, 568
Eam1104I	CTCTTC	2 cut(s)	147, 588
EarI	CTCTTC	2 cut(s)	147, 588
Eco105I	TACGTA	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	616
FaiI	YATR	6 cut(s)	8, 338, 528, 576, 582, 614
FatI	CATG	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	224, 269, 374, 498
FokI	GGATG	3 cut(s)	92, 170, 668
Fsp4HI	GCNGC	4 cut(s)	224, 269, 374, 498
FspBI	CTAG	4 cut(s)	302, 306, 684, 712
GluI	GCNGC	4 cut(s)	224, 269, 374, 498
HaeIII	GGCC	2 cut(s)	201, 483
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	379, 680
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	3 cut(s)	101, 379, 484
Hpy166II	GTNNAC	2 cut(s)	92, 492
Hpy188III	TCNNGA	5 cut(s)	278, 439, 505, 653, 703
Hpy8I	GTNNAC	2 cut(s)	92, 492
HpyAV	CCTTC	2 cut(s)	226, 615
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	109, 578
HpyCH4V	TGCA	5 cut(s)	40, 83, 146, 526, 620
HpyF3I	CTNAG	2 cut(s)	204, 478
HpySE526I	ACGT	2 cut(s)	109, 578
Hsp92II	CATG	1 cut(s)	616
Kpn2I	TCCGGA	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	289, 568
LmnI	GCTCC	2 cut(s)	220, 355
Lsp1109I	GCAGC	3 cut(s)	235, 280, 360
LweI	GCATC	2 cut(s)	70, 133
MaeI	CTAG	4 cut(s)	302, 306, 684, 712
MaeII	ACGT	2 cut(s)	109, 578
MaeIII	GTNAC	3 cut(s)	110, 179, 686
MalI	GATC	2 cut(s)	291, 570
MboI	GATC	2 cut(s)	289, 568
MboII	GAAGA	4 cut(s)	164, 520, 602, 605
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	188, 446, 647
MnlI	CCTC	7 cut(s)	130, 148, 249, 318, 419, 494, 570
MroI	TCCGGA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	3 cut(s)	54, 129, 332
MslI	CAYNNNNRTG	2 cut(s)	108, 175
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	289, 568
NlaIII	CATG	1 cut(s)	616
NlaIV	GGNNCC	2 cut(s)	25, 550
NmuCI	GTSAC	2 cut(s)	110, 179
NspI	RCATGY	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	379, 680
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	225, 270, 375, 499
Ppu21I	YACGTR	1 cut(s)	579
PshAI	GACNNNNGTC	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	25, 550
PspPI	GGNCC	2 cut(s)	200, 441
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	1 cut(s)	568
RseI	CAYNNNNRTG	2 cut(s)	108, 175
SaqAI	TTAA	3 cut(s)	54, 129, 332
SatI	GCNGC	4 cut(s)	224, 269, 374, 498
Sau3AI	GATC	2 cut(s)	289, 568
Sau96I	GGNCC	2 cut(s)	200, 441
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	9 cut(s)	88, 112, 129, 141, 165, 228, 307, 554, 581
SfaNI	GCATC	2 cut(s)	70, 133
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	108, 175
SmlI	CTYRAG	5 cut(s)	33, 215, 227, 278, 485
SmoI	CTYRAG	5 cut(s)	33, 215, 227, 278, 485
SnaBI	TACGTA	1 cut(s)	579
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	3 cut(s)	188, 446, 647
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	297, 495, 498
SspMI	CTAG	4 cut(s)	302, 306, 684, 712
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	2 cut(s)	112, 581
TaqI	TCGA	2 cut(s)	562, 588
TasI	AATT	3 cut(s)	188, 446, 647
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	379, 680
Tru1I	TTAA	3 cut(s)	54, 129, 332
Tru9I	TTAA	3 cut(s)	54, 129, 332
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	110, 179
TseI	GCWGC	3 cut(s)	223, 268, 373
Tsp45I	GTSAC	2 cut(s)	110, 179
TspDTI	ATGAA	3 cut(s)	165, 261, 597
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	2 cut(s)	446, 647
XceI	RCATGY	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	4 cut(s)	302, 306, 684, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.