Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

42018993 .. 42039997

Gene Structure 21005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAAGCTATGTCTGTAATCAAAGATGTTGGTTTCAGTTCTCAAGTTCAGGAAGTGGAGTTTAAGAACGATAAGAACAACAACAAGGGTGCAGGTGGTGAACCAAGCCTGCATCAACGTGACGAAAATGATGAGCTTAAACATGAGGTTGATCCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTTTCAAGGAGCAGCTTGAGAAGGATAAAGATGATAAGAGCTTGGGGAAATGGAAGCAGCAACTTCCTGGGAATGTTAATCTCTCTGCACTAGCTGTTGGAGAGAGTAAAGAAGCAGAAGTGAAGATTTTAAGTATGACACTGATGTTCCAGGAGCAGCCTGAACTTGTGCTGTCGATTCCATTCACCAATAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTCACTGTCTCAAAAAACATTGTCTCAGGCCTCATGTCCACCGCCTCAGTCTGGAAGACTGGTGTCAAAGTGCACAGTTCAAAAAGAACGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACTGAAGAAGAAACTACCCCTTCAGGCATGTTTGCAAGGGGTAGGTATTTTGTGAAAACAAAAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

224

Amino Acids

25.17

Weight (kDa)

6.04

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	56 - 223	1e-55	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	2 cut(s)	146, 581
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	609, 627
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	184, 226, 552
AjnI	CCWGG	2 cut(s)	286, 369
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 455, 487
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	6 cut(s)	8, 136, 172, 235, 261, 314
AluI	AGCT	6 cut(s)	8, 136, 172, 235, 261, 314
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	484, 499
Alw44I	GTGCAC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	146, 581
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	2 cut(s)	208, 499
ApaLI	GTGCAC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	232, 277, 376
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	209, 459
AsuHPI	GGTGA	2 cut(s)	110, 397
AvaII	GGWCC	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	244, 289, 388
BciT130I	CCWGG	2 cut(s)	288, 371
BcoDI	GTCTC	2 cut(s)	484, 499
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	233, 278, 377
BlsI	GCNGC	3 cut(s)	234, 279, 378
Bme1390I	CCNGG	2 cut(s)	288, 371
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	209, 459
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	288, 371
BmsI	GCATC	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	27, 257
BsaAI	YACGTR	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	288, 371
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	510, 531
BseNI	ACTGG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	244, 289, 388
BsgI	GTGCAG	2 cut(s)	111, 291
BshFI	GGCC	2 cut(s)	210, 501
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	2 cut(s)	484, 499
BsnI	GGCC	2 cut(s)	210, 501
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	151, 586
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	2 cut(s)	210, 501
BspCNI	CTCAG	2 cut(s)	509, 530
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	146, 581
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	151, 586
Bst2UI	CCWGG	2 cut(s)	288, 371
Bst4CI	ACNGT	2 cut(s)	478, 548
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	110, 174
BstDEI	CTNAG	3 cut(s)	213, 496, 517
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	154, 589
BstMAI	GTCTC	2 cut(s)	484, 499
BstMBI	GATC	2 cut(s)	151, 586
BstNI	CCWGG	2 cut(s)	288, 371
BstNSI	RCATGY	1 cut(s)	634
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	286, 369
BstSLI	GKGCMC	1 cut(s)	546
BstSNI	TACGTA	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	244, 289, 388
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	210, 501
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	359, 474
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	110, 174
Cfr13I	GGNCC	2 cut(s)	209, 459
CviAII	CATG	3 cut(s)	143, 505, 631
DdeI	CTNAG	3 cut(s)	213, 496, 517
DpnI	GATC	2 cut(s)	153, 588
DpnII	GATC	2 cut(s)	151, 586
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco105I	TACGTA	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	609, 627
EcoRII	CCWGG	2 cut(s)	286, 369
FaeI	CATG	3 cut(s)	146, 508, 634
FaiI	YATR	7 cut(s)	11, 144, 356, 506, 594, 600, 632
FatI	CATG	3 cut(s)	142, 504, 630
Fnu4HI	GCNGC	3 cut(s)	233, 278, 377
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	233, 278, 377
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	233, 278, 377
HaeIII	GGCC	2 cut(s)	210, 501
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	3 cut(s)	146, 508, 634
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	110, 397
Hpy166II	GTNNAC	4 cut(s)	101, 510, 544, 670
Hpy188III	TCNNGA	4 cut(s)	50, 155, 457, 523
Hpy8I	GTNNAC	4 cut(s)	101, 510, 544, 670
HpyAV	CCTTC	2 cut(s)	235, 633
HpyCH4III	ACNGT	2 cut(s)	478, 548
HpyCH4IV	ACGT	2 cut(s)	118, 596
HpyCH4V	TGCA	5 cut(s)	92, 112, 308, 544, 638
HpyF3I	CTNAG	3 cut(s)	213, 496, 517
HpySE526I	ACGT	2 cut(s)	118, 596
Hsp92II	CATG	3 cut(s)	146, 508, 634
Kpn2I	TCCGGA	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	151, 586
LmnI	GCTCC	2 cut(s)	229, 373
Lsp1109I	GCAGC	3 cut(s)	244, 289, 388
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	118, 596
MaeIII	GTNAC	2 cut(s)	119, 188
MalI	GATC	2 cut(s)	153, 588
MboI	GATC	2 cut(s)	151, 586
MboII	GAAGA	5 cut(s)	173, 355, 538, 620, 623
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	2 cut(s)	197, 464
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	139, 157, 437, 512, 526, 588
MroI	TCCGGA	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	4 cut(s)	63, 138, 297, 350
MslI	CAYNNNNRTG	2 cut(s)	117, 184
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	288, 371
MvaI	CCWGG	2 cut(s)	288, 371
NdeII	GATC	2 cut(s)	151, 586
NlaIII	CATG	3 cut(s)	146, 508, 634
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	119, 188
NspI	RCATGY	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	234, 279, 378
Ppu21I	YACGTR	1 cut(s)	597
PshAI	GACNNNNGTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	286, 369
PspGI	CCWGG	2 cut(s)	286, 369
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	209, 459
PsuI	RGATCY	1 cut(s)	586
RseI	CAYNNNNRTG	2 cut(s)	117, 184
SaqAI	TTAA	4 cut(s)	63, 138, 297, 350
SatI	GCNGC	3 cut(s)	233, 278, 377
Sau3AI	GATC	2 cut(s)	151, 586
Sau96I	GGNCC	2 cut(s)	209, 459
ScrFI	CCNGG	2 cut(s)	288, 371
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	117, 184
SmlI	CTYRAG	2 cut(s)	42, 236
SmoI	CTYRAG	2 cut(s)	42, 236
SnaBI	TACGTA	1 cut(s)	597
Sse9I	AATT	2 cut(s)	197, 464
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	286, 369
TaaI	ACNGT	2 cut(s)	478, 548
TaiI	ACGT	2 cut(s)	121, 599
TaqI	TCGA	2 cut(s)	395, 580
TasI	AATT	2 cut(s)	197, 464
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	4 cut(s)	63, 138, 297, 350
Tru9I	TTAA	4 cut(s)	63, 138, 297, 350
TscAI	CASTG	2 cut(s)	366, 481
TseFI	GTSAC	2 cut(s)	119, 188
TseI	GCWGC	3 cut(s)	232, 277, 376
Tsp45I	GTSAC	2 cut(s)	119, 188
TspDTI	ATGAA	2 cut(s)	174, 615
TspRI	CASTG	2 cut(s)	366, 481
VneI	GTGCAC	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.