Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

38829854 .. 38898664

Gene Structure 68811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTGTAACCAAAGATGTTGGTTTCAGTTCTCAAGTTCAGGAAGTGGAGTTTAAGAATGATAAGAACAACAACAAGGATGTAGGTGGTGAACCAAGCCTGCATCAACGTGACGAAAATGATGAGCTTAAATATGAGGTTGATCCTGCTGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGACCCTAAGTTTTCTTTCAAGGAGCAGCTTGAAAAGGATAAAGATGATAAGAGTTTGAGGAAATGGAAGCAGCAACTTCCTGGGAGTGTTAATCTCTCTGCACTAGCTGTTGGAGAGAGTAAAGAAGCAGAAGTGAGGATTTTAAGTATGACACTGATGTTCCAGGAGCAGCCTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTCACTGTCTCAAAAAACATTGTCTCAGGCCTCATGTCCACCGCCTCAGTCTGGAAGACTGGTGTCAAAGTGCACAATTCAAAAAGAACGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACTGAAGAAGAAACTACCCCTTCAGGCATGTTTGCAAGGGGCAAGTATTTTGTGAAAACAAAATTTCTGGATGATGATGGAAAATGCTATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

240

Amino Acids

27.38

Weight (kDa)

5.66

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	54 - 240	2.1e-67	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	2 cut(s)	137, 572
AcsI	RAATTY	2 cut(s)	455, 656
AcuI	CTGAAG	3 cut(s)	171, 600, 618
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	5 cut(s)	175, 217, 230, 543, 707
AjnI	CCWGG	2 cut(s)	277, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
AluBI	AGCT	4 cut(s)	127, 163, 226, 305
AluI	AGCT	4 cut(s)	127, 163, 226, 305
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	475, 490
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	137, 572
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	1 cut(s)	490
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	4 cut(s)	223, 268, 367, 382
ApoI	RAATTY	2 cut(s)	455, 656
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	101, 388
AvaII	GGWCC	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	235, 280, 369, 379
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	2 cut(s)	279, 362
BcoDI	GTCTC	2 cut(s)	475, 490
BfaI	CTAG	3 cut(s)	302, 693, 721
BisI	GCNGC	4 cut(s)	224, 269, 368, 383
BlsI	GCNGC	4 cut(s)	225, 270, 369, 384
Bme1390I	CCNGG	2 cut(s)	279, 362
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	2 cut(s)	279, 362
BmsI	GCATC	2 cut(s)	112, 679
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	279, 362
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	4 cut(s)	85, 163, 670, 694
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	501, 522
BseNI	ACTGG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	4 cut(s)	235, 280, 369, 379
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	475, 490
BsnI	GGCC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	142, 577
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	500, 521
BspEI	TCCGGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	137, 572
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	142, 577
Bst2UI	CCWGG	2 cut(s)	279, 362
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	101, 165
BstDEI	CTNAG	3 cut(s)	204, 487, 508
BstF5I	GGATG	4 cut(s)	85, 163, 670, 694
BstKTI	GATC	2 cut(s)	145, 580
BstMAI	GTCTC	2 cut(s)	475, 490
BstMBI	GATC	2 cut(s)	142, 577
BstNI	CCWGG	2 cut(s)	279, 362
BstNSI	RCATGY	1 cut(s)	625
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	277, 360
BstSLI	GKGCMC	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	588
BstV1I	GCAGC	4 cut(s)	235, 280, 369, 379
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	85, 163, 670, 694
BtsIMutI	CAGTG	2 cut(s)	350, 465
Cac8I	GCNNGC	2 cut(s)	101, 165
Cfr13I	GGNCC	1 cut(s)	450
CviAII	CATG	2 cut(s)	496, 622
CviJI	RGCY	7 cut(s)	99, 127, 163, 226, 305, 370, 492
CviKI_1	RGCY	7 cut(s)	99, 127, 163, 226, 305, 370, 492
DdeI	CTNAG	3 cut(s)	204, 487, 508
DpnI	GATC	2 cut(s)	144, 579
DpnII	GATC	2 cut(s)	142, 577
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco105I	TACGTA	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	3 cut(s)	171, 600, 618
EcoRII	CCWGG	2 cut(s)	277, 360
FaeI	CATG	2 cut(s)	499, 625
FaiI	YATR	6 cut(s)	135, 347, 497, 585, 591, 623
FatI	CATG	2 cut(s)	495, 621
Fnu4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FokI	GGATG	4 cut(s)	92, 170, 677, 701
Fsp4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FspBI	CTAG	3 cut(s)	302, 693, 721
GluI	GCNGC	4 cut(s)	224, 269, 368, 383
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	448
Hin1II	CATG	2 cut(s)	499, 625
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	2 cut(s)	101, 388
Hpy166II	GTNNAC	3 cut(s)	92, 501, 535
Hpy188III	TCNNGA	6 cut(s)	41, 197, 448, 514, 662, 712
Hpy8I	GTNNAC	3 cut(s)	92, 501, 535
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	109, 587
HpyCH4V	TGCA	4 cut(s)	103, 299, 535, 629
HpyF3I	CTNAG	3 cut(s)	204, 487, 508
HpySE526I	ACGT	2 cut(s)	109, 587
Hsp92II	CATG	2 cut(s)	499, 625
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	142, 577
LmnI	GCTCC	2 cut(s)	220, 364
Lsp1109I	GCAGC	4 cut(s)	235, 280, 369, 379
LweI	GCATC	2 cut(s)	112, 679
MaeI	CTAG	3 cut(s)	302, 693, 721
MaeII	ACGT	2 cut(s)	109, 587
MaeIII	GTNAC	4 cut(s)	7, 110, 179, 695
MalI	GATC	2 cut(s)	144, 579
MboI	GATC	2 cut(s)	142, 577
MboII	GAAGA	4 cut(s)	164, 529, 611, 614
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	4 cut(s)	188, 455, 538, 656
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	130, 148, 249, 327, 428, 503, 517, 579
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	54, 129, 288, 341
MslI	CAYNNNNRTG	2 cut(s)	108, 175
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	2 cut(s)	279, 362
MvaI	CCWGG	2 cut(s)	279, 362
NdeII	GATC	2 cut(s)	142, 577
NlaIII	CATG	2 cut(s)	499, 625
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	2 cut(s)	110, 179
NspI	RCATGY	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	225, 270, 369, 384
Ppu21I	YACGTR	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	277, 360
PspGI	CCWGG	2 cut(s)	277, 360
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	108, 175
SaqAI	TTAA	4 cut(s)	54, 129, 288, 341
SatI	GCNGC	4 cut(s)	224, 269, 368, 383
Sau3AI	GATC	2 cut(s)	142, 577
Sau96I	GGNCC	1 cut(s)	450
ScrFI	CCNGG	2 cut(s)	279, 362
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	9 cut(s)	88, 112, 129, 141, 165, 228, 307, 563, 590
SfaNI	GCATC	2 cut(s)	112, 679
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	108, 175
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SnaBI	TACGTA	1 cut(s)	588
Sse9I	AATT	4 cut(s)	188, 455, 538, 656
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	3 cut(s)	302, 693, 721
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	277, 360
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	112, 590
TaqI	TCGA	1 cut(s)	571
TasI	AATT	4 cut(s)	188, 455, 538, 656
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	54, 129, 288, 341
Tru9I	TTAA	4 cut(s)	54, 129, 288, 341
TscAI	CASTG	2 cut(s)	357, 472
TseFI	GTSAC	2 cut(s)	110, 179
TseI	GCWGC	4 cut(s)	223, 268, 367, 382
Tsp45I	GTSAC	2 cut(s)	110, 179
TspDTI	ATGAA	1 cut(s)	606
TspRI	CASTG	2 cut(s)	357, 472
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	2 cut(s)	455, 656
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	302, 693, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.